ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast44h10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_471321.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 567 Score = 170 bits (86), Expect = 2e-39 Identities = 174/202 (86%), Gaps = 1/202 (0%) Strand = Plus / Plus Query: 115 tcccacccgacctacttcgagatgatcaaggaggcgatcgcggcgctcaaggacaggacc 174 ||||||||| | || |||||||||||||||||||||||| ||| ||| ||||| |||||| Sbjct: 88 tcccacccgccttatttcgagatgatcaaggaggcgatcacggtgcttaaggagaggacc 147 Query: 175 gggtcgagctcggtcgccatcgccaagtacgtcgaggagaagcacggcaagtcgctcccg 234 || |||||| || |||||||||||||||| | |||||||||||||| |||||| ||| Sbjct: 148 ggctcgagcgcgcacgccatcgccaagtacatggaggagaagcacggggcgtcgctgccg 207 Query: 235 gccaacttcaagaagatgctctccgctccagctccgcgcggccgccgccaagggcaagct 294 ||||||| |||||||||||||||| ||||||| |||| | ||| ||||||||||||| Sbjct: 208 gccaactacaagaagatgctctcc-atccagctgcgcgggttcgcttccaagggcaagct 266 Query: 295 cgtcaaggtcaaggccttctac 316 ||||||||| ||||||| |||| Sbjct: 267 cgtcaaggttaaggcctcctac 288
>dbj|AK073668.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052L06, full insert sequence Length = 891 Score = 170 bits (86), Expect = 2e-39 Identities = 174/202 (86%), Gaps = 1/202 (0%) Strand = Plus / Plus Query: 115 tcccacccgacctacttcgagatgatcaaggaggcgatcgcggcgctcaaggacaggacc 174 ||||||||| | || |||||||||||||||||||||||| ||| ||| ||||| |||||| Sbjct: 179 tcccacccgccttatttcgagatgatcaaggaggcgatcacggtgcttaaggagaggacc 238 Query: 175 gggtcgagctcggtcgccatcgccaagtacgtcgaggagaagcacggcaagtcgctcccg 234 || |||||| || |||||||||||||||| | |||||||||||||| |||||| ||| Sbjct: 239 ggctcgagcgcgcacgccatcgccaagtacatggaggagaagcacggggcgtcgctgccg 298 Query: 235 gccaacttcaagaagatgctctccgctccagctccgcgcggccgccgccaagggcaagct 294 ||||||| |||||||||||||||| ||||||| |||| | ||| ||||||||||||| Sbjct: 299 gccaactacaagaagatgctctcc-atccagctgcgcgggttcgcttccaagggcaagct 357 Query: 295 cgtcaaggtcaaggccttctac 316 ||||||||| ||||||| |||| Sbjct: 358 cgtcaaggttaaggcctcctac 379
>gb|AF527615.1| Zea mays histone H1-like protein HON101 (hon101) mRNA, complete cds Length = 780 Score = 165 bits (83), Expect = 1e-37 Identities = 168/195 (86%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 115 tcccacccgacctacttcgagatgatcaaggaggcgatcgcggcgctcaaggacaggacc 174 ||||||||| | ||||||||||||||||||||||| ||| ||||||||||||| |||||| Sbjct: 186 tcccacccgccttacttcgagatgatcaaggaggctatcacggcgctcaaggagaggacc 245 Query: 175 gggtcgagctcggtcgccatcgccaagtacgtcgaggagaagcacggcaagtcgctcccg 234 || || |||||| || ||||||||||| || | ||| ||||||||| ||| || ||| Sbjct: 246 ggctccagctcgcaagcgatcgccaagtatgtgggggacaagcacggcgcgtctctgccg 305 Query: 235 gccaacttcaagaagatgctctccgctccagctccgcgcggccgccgccaagggcaagct 294 |||||||||||||||||||| ||| |||||||||| | | |||| |||||||||||||| Sbjct: 306 gccaacttcaagaagatgctttcc-atccagctccgtgggtccgcagccaagggcaagct 364 Query: 295 cgtcaaggtcaaggc 309 ||| ||||||||||| Sbjct: 365 cgtgaaggtcaaggc 379
>gb|AY104249.1| Zea mays PCO063043 mRNA sequence Length = 942 Score = 165 bits (83), Expect = 1e-37 Identities = 168/195 (86%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 115 tcccacccgacctacttcgagatgatcaaggaggcgatcgcggcgctcaaggacaggacc 174 ||||||||| | ||||||||||||||||||||||| ||| ||||||||||||| |||||| Sbjct: 200 tcccacccgccttacttcgagatgatcaaggaggctatcacggcgctcaaggagaggacc 259 Query: 175 gggtcgagctcggtcgccatcgccaagtacgtcgaggagaagcacggcaagtcgctcccg 234 || || |||||| || ||||||||||| || | ||| ||||||||| ||| || ||| Sbjct: 260 ggctccagctcgcaagcgatcgccaagtatgtgggggacaagcacggcgcgtctctgccg 319 Query: 235 gccaacttcaagaagatgctctccgctccagctccgcgcggccgccgccaagggcaagct 294 |||||||||||||||||||| ||| |||||||||| | | |||| |||||||||||||| Sbjct: 320 gccaacttcaagaagatgctttcc-atccagctccgtgggtccgcagccaagggcaagct 378 Query: 295 cgtcaaggtcaaggc 309 ||| ||||||||||| Sbjct: 379 cgtgaaggtcaaggc 393
>emb|AL607007.3|OSJN00118 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018J12, complete sequence Length = 120004 Score = 157 bits (79), Expect = 3e-35 Identities = 158/183 (86%), Gaps = 1/183 (0%) Strand = Plus / Plus Query: 134 agatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgcca 193 |||||||||||||||||||| ||| ||| ||||| |||||||| |||||| || ||||| Sbjct: 26766 agatgatcaaggaggcgatcacggtgcttaaggagaggaccggctcgagcgcgcacgcca 26825 Query: 194 tcgccaagtacgtcgaggagaagcacggcaagtcgctcccggccaacttcaagaagatgc 253 ||||||||||| | |||||||||||||| |||||| |||||||||| ||||||||||| Sbjct: 26826 tcgccaagtacatggaggagaagcacggggcgtcgctgccggccaactacaagaagatgc 26885 Query: 254 tctccgctccagctccgcgcggccgccgccaagggcaagctcgtcaaggtcaaggccttc 313 ||||| ||||||| |||| | ||| |||||||||||||||||||||| ||||||| | Sbjct: 26886 tctcc-atccagctgcgcgggttcgcttccaagggcaagctcgtcaaggttaaggcctcc 26944 Query: 314 tac 316 ||| Sbjct: 26945 tac 26947
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 157 bits (79), Expect = 3e-35 Identities = 158/183 (86%), Gaps = 1/183 (0%) Strand = Plus / Plus Query: 134 agatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgcca 193 |||||||||||||||||||| ||| ||| ||||| |||||||| |||||| || ||||| Sbjct: 10046282 agatgatcaaggaggcgatcacggtgcttaaggagaggaccggctcgagcgcgcacgcca 10046341 Query: 194 tcgccaagtacgtcgaggagaagcacggcaagtcgctcccggccaacttcaagaagatgc 253 ||||||||||| | |||||||||||||| |||||| |||||||||| ||||||||||| Sbjct: 10046342 tcgccaagtacatggaggagaagcacggggcgtcgctgccggccaactacaagaagatgc 10046401 Query: 254 tctccgctccagctccgcgcggccgccgccaagggcaagctcgtcaaggtcaaggccttc 313 ||||| ||||||| |||| | ||| |||||||||||||||||||||| ||||||| | Sbjct: 10046402 tctcc-atccagctgcgcgggttcgcttccaagggcaagctcgtcaaggttaaggcctcc 10046460 Query: 314 tac 316 ||| Sbjct: 10046461 tac 10046463 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 206 tcgaggagaagcacggcaagtcgctcccggcca 238 |||||| |||||||||||||||| |||||||| Sbjct: 31962184 tcgaggggaagcacggcaagtcggccccggcca 31962152
>dbj|D87064.1| Triticum aestivum gene for histone H1, complete cds, clone:TH315 Length = 3025 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 144 ggaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgccatcgccaagta 203 |||||||||||| ||||| ||||| |||| |||||||||| | ||||||||||||||||| Sbjct: 1202 ggaggcgatcgccgcgctgaaggagaggaacgggtcgagcaccgtcgccatcgccaagta 1261 Query: 204 cgtcgaggagaagcac 219 | ||||||| |||||| Sbjct: 1262 catcgaggacaagcac 1277
>gb|AF461814.1| Zea mays histone H1-like protein (hon102) mRNA, complete cds Length = 991 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 145 gaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgccatcgccaagtac 204 ||||||||||| || |||||||| |||| |||||||||||||| |||||| ||||||| Sbjct: 238 gaggcgatcgctgccctcaaggagaggaaggggtcgagctcggtggccatcagcaagtac 297 Query: 205 gtcgaggagaagca 218 ||||||| |||||| Sbjct: 298 gtcgaggggaagca 311
>gb|BT016467.1| Zea mays clone Contig300 mRNA sequence Length = 1100 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 145 gaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgccatcgccaagtac 204 ||||||||||| || |||||||| |||| |||||||||||||| |||||| ||||||| Sbjct: 276 gaggcgatcgctgccctcaaggagaggaaggggtcgagctcggtggccatcagcaagtac 335 Query: 205 gtcgaggagaagca 218 ||||||| |||||| Sbjct: 336 gtcgaggggaagca 349
>gb|BT018031.1| Zea mays clone EL01N0530C09.c mRNA sequence Length = 1299 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 145 gaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgccatcgccaagtac 204 ||||||||||| || |||||||| |||| |||||||||||||| |||||| ||||||| Sbjct: 470 gaggcgatcgctgccctcaaggagaggaaggggtcgagctcggtggccatcagcaagtac 529 Query: 205 gtcgaggagaagca 218 ||||||| |||||| Sbjct: 530 gtcgaggggaagca 543
>gb|AY103883.1| Zea mays PCO072547 mRNA sequence Length = 1156 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 145 gaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgccatcgccaagtac 204 ||||||||||| || |||||||| |||| |||||||||||||| |||||| ||||||| Sbjct: 284 gaggcgatcgctgccctcaaggagaggaaggggtcgagctcggtggccatcagcaagtac 343 Query: 205 gtcgaggagaagca 218 ||||||| |||||| Sbjct: 344 gtcgaggggaagca 357
>ref|XM_493700.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1049 Score = 65.9 bits (33), Expect = 7e-08 Identities = 36/37 (97%) Strand = Plus / Plus Query: 117 ccacccgacctacttcgagatgatcaaggaggcgatc 153 ||||||| ||||||||||||||||||||||||||||| Sbjct: 304 ccacccgccctacttcgagatgatcaaggaggcgatc 340
>dbj|AK069863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037L12, full insert sequence Length = 1049 Score = 65.9 bits (33), Expect = 7e-08 Identities = 36/37 (97%) Strand = Plus / Plus Query: 117 ccacccgacctacttcgagatgatcaaggaggcgatc 153 ||||||| ||||||||||||||||||||||||||||| Sbjct: 304 ccacccgccctacttcgagatgatcaaggaggcgatc 340
>gb|U74296.1|OSU74296 Oryza sativa water stress inducible protein (KCDL917) mRNA, complete cds Length = 858 Score = 65.9 bits (33), Expect = 7e-08 Identities = 36/37 (97%) Strand = Plus / Plus Query: 117 ccacccgacctacttcgagatgatcaaggaggcgatc 153 ||||||| ||||||||||||||||||||||||||||| Sbjct: 53 ccacccgccctacttcgagatgatcaaggaggcgatc 89
>ref|NM_185048.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1371 Score = 63.9 bits (32), Expect = 3e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 132 cgagatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagc 183 |||||||||| ||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 271 cgagatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc 322
>dbj|AK099211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E13, full insert sequence Length = 1328 Score = 63.9 bits (32), Expect = 3e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 132 cgagatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagc 183 |||||||||| ||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 286 cgagatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc 337
>dbj|AK067840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128M09, full insert sequence Length = 1389 Score = 63.9 bits (32), Expect = 3e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 132 cgagatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagc 183 |||||||||| ||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 286 cgagatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc 337
>gb|AF107025.1|AF107025 Triticum aestivum similar to histone H1 mRNA sequence Length = 1082 Score = 63.9 bits (32), Expect = 3e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 116 cccacccgacctacttcgagatgatcaaggaggcgatcgcggcgctcaaggacaggaccg 175 |||||||||||||| |||||| | |||||||||||| || || ||||| || || Sbjct: 78 cccacccgacctacgctgagatggtggcggaggcgatcgccgccctgaaggagagaggcg 137 Query: 176 ggtcgagctcggtcgccatcgccaagtacgtcgaggagaagcac 219 |||||||| | |||||||||||||||||| ||||||| |||||| Sbjct: 138 ggtcgagcaccgtcgccatcgccaagtacatcgaggacaagcac 181
>ref|XM_476900.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1174 Score = 60.0 bits (30), Expect = 4e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 132 cgagatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagctc 185 ||||||||||| ||||||||||| |||||| ||||| ||||| || |||||||| Sbjct: 347 cgagatgatcatggaggcgatcgtggcgctgaaggagaggactggatcgagctc 400
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 134 agatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagc 183 |||||||| ||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 33000939 agatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc 33000988 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 140 tcaaggaggcgatcgcggcgctcaaggac 168 ||||||||||||||| |||||||| |||| Sbjct: 14877781 tcaaggaggcgatcgaggcgctcagggac 14877809 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 gaggcgatcgcggcgctcaaggac 168 |||||||||| ||||||||||||| Sbjct: 14914385 gaggcgatcgaggcgctcaaggac 14914408
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 134 agatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagc 183 |||||||| ||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 33091449 agatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc 33091498 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 140 tcaaggaggcgatcgcggcgctcaaggac 168 ||||||||||||||| |||||||| |||| Sbjct: 14872315 tcaaggaggcgatcgaggcgctcagggac 14872343 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 gaggcgatcgcggcgctcaaggac 168 |||||||||| ||||||||||||| Sbjct: 14908919 gaggcgatcgaggcgctcaaggac 14908942
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 134 agatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagc 183 |||||||| ||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 122369 agatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc 122320
>dbj|AK106132.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F12, full insert sequence Length = 1174 Score = 60.0 bits (30), Expect = 4e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 132 cgagatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagctc 185 ||||||||||| ||||||||||| |||||| ||||| ||||| || |||||||| Sbjct: 347 cgagatgatcatggaggcgatcgtggcgctgaaggagaggactggatcgagctc 400
>dbj|AK102642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033100F04, full insert sequence Length = 1175 Score = 60.0 bits (30), Expect = 4e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 132 cgagatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagctc 185 ||||||||||| ||||||||||| |||||| ||||| ||||| || |||||||| Sbjct: 348 cgagatgatcatggaggcgatcgtggcgctgaaggagaggactggatcgagctc 401
>dbj|AK099050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148D20, full insert sequence Length = 1175 Score = 60.0 bits (30), Expect = 4e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 132 cgagatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagctc 185 ||||||||||| ||||||||||| |||||| ||||| ||||| || |||||||| Sbjct: 348 cgagatgatcatggaggcgatcgtggcgctgaaggagaggactggatcgagctc 401
>dbj|AK059544.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F03, full insert sequence Length = 1177 Score = 60.0 bits (30), Expect = 4e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 132 cgagatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagctc 185 ||||||||||| ||||||||||| |||||| ||||| ||||| || |||||||| Sbjct: 350 cgagatgatcatggaggcgatcgtggcgctgaaggagaggactggatcgagctc 403
>gb|AY109570.1| Zea mays CL1864_2 mRNA sequence Length = 1002 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 117 ccacccgacctacttcgagatgatcaaggaggcgatc 153 ||||||| |||| |||||||||||||||||||||||| Sbjct: 698 ccacccgccctatttcgagatgatcaaggaggcgatc 662 Score = 46.1 bits (23), Expect = 0.067 Identities = 32/35 (91%) Strand = Plus / Minus Query: 277 cgccgccaagggcaagctcgtcaaggtcaaggcct 311 ||||||||||||| ||||||||||||||||||| Sbjct: 536 cgccgccaagggccgcctcgtcaaggtcaaggcct 502
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 7e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 134 agatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagctc 185 ||||||||| ||||||||||| |||||| ||||| ||||| || |||||||| Sbjct: 4516083 agatgatcatggaggcgatcgtggcgctgaaggagaggactggatcgagctc 4516134
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 56.0 bits (28), Expect = 7e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 134 agatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagctc 185 ||||||||| ||||||||||| |||||| ||||| ||||| || |||||||| Sbjct: 94802 agatgatcatggaggcgatcgtggcgctgaaggagaggactggatcgagctc 94853
>gb|AF107027.1|AF107027 Triticum aestivum histone H1 WH1A.4 mRNA, complete cds Length = 975 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Plus Query: 144 ggaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgccatcgccaagta 203 |||||||||||| || || ||||| |||| |||||||||| | |||| |||| ||||| Sbjct: 212 ggaggcgatcgccgccctgaaggagaggagcgggtcgagcaccatcgcgatcggcaagtt 271 Query: 204 cgtcgaggagaagcacg 220 | ||||||| ||||||| Sbjct: 272 catcgaggacaagcacg 288
>gb|AF107024.1|AF107024 Triticum aestivum histone H1 WH1B.1 mRNA, complete cds Length = 1114 Score = 50.1 bits (25), Expect = 0.004 Identities = 40/45 (88%) Strand = Plus / Plus Query: 175 gggtcgagctcggtcgccatcgccaagtacgtcgaggagaagcac 219 ||||||||| || |||||||||||||| ||||||||| |||||| Sbjct: 242 gggtcgagcccgtacgccatcgccaagttcgtcgaggacaagcac 286
>gb|BT018112.1| Zea mays clone EL01N0553G06.c mRNA sequence Length = 1005 Score = 48.1 bits (24), Expect = 0.017 Identities = 33/36 (91%) Strand = Plus / Plus Query: 144 ggaggcgatcgcggcgctcaaggacaggaccgggtc 179 ||||||||||||| |||||||||| ||||| ||||| Sbjct: 254 ggaggcgatcgcgtcgctcaaggagaggacggggtc 289
>emb|X59872.2|TAHISTH1 T.aestivum L mRNA for histone H1 Length = 1031 Score = 48.1 bits (24), Expect = 0.017 Identities = 63/76 (82%) Strand = Plus / Plus Query: 144 ggaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgccatcgccaagta 203 |||||||||||| || || ||||| |||| |||||||||| | |||| |||| ||||| Sbjct: 255 ggaggcgatcgccgccctgaaggagaggagcgggtcgagcaccatcgcgatcggcaagtt 314 Query: 204 cgtcgaggagaagcac 219 | ||||||| |||||| Sbjct: 315 catcgaggacaagcac 330
>gb|AF107026.1|AF107026 Triticum aestivum histone H1 WH1A.3 mRNA, partial cds Length = 952 Score = 48.1 bits (24), Expect = 0.017 Identities = 63/76 (82%) Strand = Plus / Plus Query: 144 ggaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgccatcgccaagta 203 |||||||||||| || || ||||| |||| |||||||||| | |||| ||||| |||| Sbjct: 154 ggaggcgatcgccgccctgaaggagaggagcgggtcgagcaccatcgcgatcgcaaagtt 213 Query: 204 cgtcgaggagaagcac 219 | ||||||| |||||| Sbjct: 214 catcgaggacaagcac 229
>gb|AF107023.1|AF107023 Triticum aestivum histone H1 WH1A.2 mRNA, complete cds Length = 1019 Score = 48.1 bits (24), Expect = 0.017 Identities = 63/76 (82%) Strand = Plus / Plus Query: 144 ggaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgccatcgccaagta 203 |||||||||||| || || ||||| |||| |||||||||| | |||| |||| ||||| Sbjct: 221 ggaggcgatcgccgccctgaaggagaggagcgggtcgagcaccatcgcgatcggcaagtt 280 Query: 204 cgtcgaggagaagcac 219 | ||||||| |||||| Sbjct: 281 catcgaggataagcac 296
>gb|AF107022.1|AF107022 Triticum aestivum histone H1 WH1A.1 mRNA, complete cds Length = 1050 Score = 48.1 bits (24), Expect = 0.017 Identities = 63/76 (82%) Strand = Plus / Plus Query: 144 ggaggcgatcgcggcgctcaaggacaggaccgggtcgagctcggtcgccatcgccaagta 203 |||||||||||| || || ||||| |||| |||||||||| | |||| |||| ||||| Sbjct: 229 ggaggcgatcgccgccctgaaggagaggagcgggtcgagcaccatcgcgatcggcaagtt 288 Query: 204 cgtcgaggagaagcac 219 | ||||||| |||||| Sbjct: 289 catcgaggacaagcac 304
>emb|Z99972.1|MAZ99972 Musa acuminata mRNA for putative histine H1 (clone pBAN ED88) Length = 729 Score = 48.1 bits (24), Expect = 0.017 Identities = 45/52 (86%) Strand = Plus / Plus Query: 132 cgagatgatcaaggaggcgatcgcggcgctcaaggacaggaccgggtcgagc 183 ||||||||||| ||||||||||| | |||| ||||| | |||||||||||| Sbjct: 288 cgagatgatcatggaggcgatcgtgacgctgaaggagcgcaccgggtcgagc 339
>dbj|AK098326.1| Homo sapiens cDNA FLJ41007 fis, clone UTERU2017810 Length = 2574 Score = 46.1 bits (23), Expect = 0.067 Identities = 26/27 (96%) Strand = Plus / Minus Query: 257 ccgctccagctccgcgcggccgccgcc 283 ||||||||||||||||| ||||||||| Sbjct: 212 ccgctccagctccgcgctgccgccgcc 186
>gb|AE005824.1| Caulobacter crescentus CB15 section 150 of 359 of the complete genome Length = 10405 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 231 cccggccaacttcaagaagatg 252 |||||||||||||||||||||| Sbjct: 5739 cccggccaacttcaagaagatg 5760
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Plus Query: 134 agatgatcaaggaggcgatcgcggcg 159 ||||| |||||||||||||||||||| Sbjct: 2019050 agatgctcaaggaggcgatcgcggcg 2019075
>ref|XM_473975.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 888 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 206 tcgaggagaagcacggcaagtcgctcccggcca 238 |||||| |||||||||||||||| |||||||| Sbjct: 281 tcgaggggaagcacggcaagtcggccccggcca 313
>ref|XM_470747.1| Oryza sativa (japonica cultivar-group), mRNA Length = 540 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 140 tcaaggaggcgatcgcggcgctcaaggac 168 ||||||||||||||| |||||||| |||| Sbjct: 281 tcaaggaggcgatcgaggcgctcagggac 309
>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08, complete sequence Length = 166951 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 206 tcgaggagaagcacggcaagtcgctcccggcca 238 |||||| |||||||||||||||| |||||||| Sbjct: 135050 tcgaggggaagcacggcaagtcggccccggcca 135018
>gb|AF514418.1| Pisum fulvum histone H1 (His1) gene, partial cds Length = 985 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 ggcaagctcgtcaaggtcaaggcct 311 ||||||||||||||||| ||||||| Sbjct: 428 ggcaagctcgtcaaggttaaggcct 452
>gb|AF514417.1| Pisum sativum subsp. abyssinicum histone H1 (His1) gene, partial cds Length = 985 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 ggcaagctcgtcaaggtcaaggcct 311 ||||||||||||||||| ||||||| Sbjct: 428 ggcaagctcgtcaaggttaaggcct 452
>gb|AF352248.1| Pisum sativum histone H1 (His1) gene, His1-1 allele, partial cds Length = 1003 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 ggcaagctcgtcaaggtcaaggcct 311 ||||||||||||||||| ||||||| Sbjct: 428 ggcaagctcgtcaaggttaaggcct 452
>gb|AF352247.1| Pisum sativum histone H1 (His1) gene, His1-3 allele, partial cds Length = 970 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 ggcaagctcgtcaaggtcaaggcct 311 ||||||||||||||||| ||||||| Sbjct: 428 ggcaagctcgtcaaggttaaggcct 452
>gb|AF352246.1| Pisum sativum histone H1 (His1) gene, His1-2 allele, partial cds Length = 988 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 ggcaagctcgtcaaggtcaaggcct 311 ||||||||||||||||| ||||||| Sbjct: 428 ggcaagctcgtcaaggttaaggcct 452
>gb|AC084762.8| Oryza sativa chromosome 3 BAC OSJNBa0013O08 genomic sequence, complete sequence Length = 148021 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 140 tcaaggaggcgatcgcggcgctcaaggac 168 ||||||||||||||| |||||||| |||| Sbjct: 54987 tcaaggaggcgatcgaggcgctcagggac 54959 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 gaggcgatcgcggcgctcaaggac 168 |||||||||| ||||||||||||| Sbjct: 18383 gaggcgatcgaggcgctcaaggac 18360
>dbj|AB021873.1| Pisum sativum RSP mRNA for ribosome-sedimenting protein, complete cds Length = 1186 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 ggcaagctcgtcaaggtcaaggcct 311 ||||||||||||||||| ||||||| Sbjct: 420 ggcaagctcgtcaaggttaaggcct 444
>dbj|AB021872.1| Pisum sativum mRNA for ribosome-sedimenting protein, partial cds Length = 1079 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 ggcaagctcgtcaaggtcaaggcct 311 ||||||||||||||||| ||||||| Sbjct: 331 ggcaagctcgtcaaggttaaggcct 355
>ref|XM_470755.1| Oryza sativa (japonica cultivar-group), mRNA Length = 567 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 gaggcgatcgcggcgctcaaggac 168 |||||||||| ||||||||||||| Sbjct: 142 gaggcgatcgaggcgctcaaggac 165
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 129 cttcgagatgatcaaggaggcgatcgcg 156 ||||||||||||| ||||||||| |||| Sbjct: 1087806 cttcgagatgatcgaggaggcgaacgcg 1087779
>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete sequence Length = 137184 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 gaggcgatcgcggcgctcaaggac 168 |||||||||| ||||||||||||| Sbjct: 128377 gaggcgatcgaggcgctcaaggac 128354
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gcggcagccgctgcggcgtc 116 |||||||||||||||||||| Sbjct: 1362617 gcggcagccgctgcggcgtc 1362598
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 gccgccgccaagggcaagct 294 |||||||||||||||||||| Sbjct: 2438913 gccgccgccaagggcaagct 2438932
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 ggcgatcgcggcgctcaaggacag 170 ||||||||||||||||||| |||| Sbjct: 4120472 ggcgatcgcggcgctcaagcacag 4120495
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 ccgctccagctccgcgcggc 276 |||||||||||||||||||| Sbjct: 197870 ccgctccagctccgcgcggc 197889
>emb|CR388176.8| Zebrafish DNA sequence from clone DKEY-109D19 in linkage group 21, complete sequence Length = 159175 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 cgtcgaggagaagcacggca 223 |||||||||||||||||||| Sbjct: 102450 cgtcgaggagaagcacggca 102431
>dbj|AB225114.1| Aspergillus oryzae cDNA, contig sequence: AoEST1965 Length = 1077 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gaagatgctctccgctccag 265 |||||||||||||||||||| Sbjct: 880 gaagatgctctccgctccag 899
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 gaagatgctctccgctccag 265 |||||||||||||||||||| Sbjct: 2149973 gaagatgctctccgctccag 2149954
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 gaggcgatcgcggcgctcaaggac 168 ||||||||||||||| |||||||| Sbjct: 2383637 gaggcgatcgcggcggtcaaggac 2383614
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gcggcagccgctgcggcgtc 116 |||||||||||||||||||| Sbjct: 2790631 gcggcagccgctgcggcgtc 2790612
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 agatgatcaaggaggcgatc 153 |||||||||||||||||||| Sbjct: 1642383 agatgatcaaggaggcgatc 1642364
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 aaggaggcgatcgcggcgctcaag 165 ||||||||||||||| |||||||| Sbjct: 3592689 aaggaggcgatcgcgccgctcaag 3592712
>dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0493C11 Length = 143113 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 agatgatcaaggaggcgatc 153 |||||||||||||||||||| Sbjct: 45554 agatgatcaaggaggcgatc 45535 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,452,962 Number of Sequences: 3902068 Number of extensions: 1452962 Number of successful extensions: 37318 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36276 Number of HSP's gapped (non-prelim): 1036 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
