>YB79_YEAST (P38138) Putative family 31 glucosidase in FAT2-PBP2 intergenic|
           region (EC 3.2.1.-)
          Length = 954

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 163 TGRPWSPPWRSWGARRCGWSGVPWRSIYSIESGVD 59
           TGRP+ PP  S G  +C W+      + +++S +D
Sbjct: 379 TGRPFLPPISSIGYHQCRWNYNDEMDVLTVDSQMD 413

>YAAX_ECOLI (P75616) Hypothetical protein yaaX precursor|
          Length = 98

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 93  HGTPDQP--HRLAPHERHGGDHG 155
           HG P  P  H+ APH+ HGG HG
Sbjct: 71  HGPPPPPRHHKKAPHDHHGG-HG 92

>POLG_HCVJL (Q68798) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3021

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = -2

Query: 163 TGRPWSPP---WRSWGARRCGWSG 101
           TGR W  P   W  +G   CGW+G
Sbjct: 71  TGRAWGQPGYAWPLYGNEGCGWAG 94

>POLG_HCVVN (O92530) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3012

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = -2

Query: 163 TGRPWSPP---WRSWGARRCGWSG 101
           TGR W+ P   W  +G   CGW G
Sbjct: 71  TGRTWAQPGYPWPLYGNEGCGWMG 94

>POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3017

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
 Frame = -2

Query: 160 GRPWSPP---WRSWGARRCGWSG 101
           GR W+ P   W  +G+  CGW+G
Sbjct: 72  GRHWAQPGYPWPLYGSEGCGWAG 94

>NFKB2_CHICK (P98150) Nuclear factor NF-kappa-B p100 subunit (Nuclear factor|
           NF-kappa-B p97 subunit) (DNA-binding factor KBF2)
           (Lyt-10) [Contains: Nuclear factor NF-kappa-B p52
           subunit (Nuclear factor NF-kappa-B p50B subunit)]
          Length = 906

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 10  SSQARPPTLIHCPAPPRRHHSLYYRSNAM 96
           +SQ  PP ++ CP PP R+H L   ++A+
Sbjct: 755 ASQPSPP-ILSCPPPPSRNHLLSLDTDAL 782

>PSARL_PONPY (Q5R5H4) Presenilins-associated rhomboid-like protein,|
          mitochondrial precursor (EC 3.4.21.105) (Mitochondrial
          intramembrane-cleaving protease PARL) [Contains: P-beta
          (Pbeta)]
          Length = 379

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -1

Query: 77 YREWCRRG-GAGQ*M--SVGGRACEE 9
          +R W +RG G GQ    SVGGR+CEE
Sbjct: 3  WRGWAQRGWGCGQAWAASVGGRSCEE 28

>PSARL_HUMAN (Q9H300) Presenilins-associated rhomboid-like protein,|
          mitochondrial precursor (EC 3.4.21.105) (Mitochondrial
          intramembrane cleaving protease PARL) [Contains: P-beta
          (Pbeta)]
          Length = 379

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -1

Query: 77 YREWCRRG-GAGQ*M--SVGGRACEE 9
          +R W +RG G GQ    SVGGR+CEE
Sbjct: 3  WRGWAQRGWGCGQAWGASVGGRSCEE 28

>DLGP1_MOUSE (Q9D415) Disks large-associated protein 1 (DAP-1) (Guanylate|
           kinase-associated protein) (SAP90/PSD-95-associated
           protein 1) (SAPAP1) (PSD-95/SAP90-binding protein 1)
          Length = 992

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 12  LAGSPSYTHSLSRSAPSTPLSIL*IERHGTPDQPHRLAPHERHGGDH 152
           L+GS S+ H ++  A    LS      H +  +P+ L+P + H  DH
Sbjct: 4   LSGSRSHHHGITCEAACDSLS------HHSDHKPYLLSPVDHHPADH 44

>ATX1_HUMAN (P54253) Ataxin-1 (Spinocerebellar ataxia type 1 protein)|
          Length = 816

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 19  ARPPTLIHCPAPPRRHHSLYYRSNAMARRTNHTASPP 129
           +R P LI   +PP    + Y   ++  + T  TASPP
Sbjct: 229 SRAPGLITPGSPPPAQQNQYVHISSSPQNTGRTASPP 265

>POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3032

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = -2

Query: 163 TGRPWSPP---WRSWGARRCGWSG 101
           TG+ W  P   W  +G   CGW+G
Sbjct: 71  TGKSWGKPGYPWPLYGNEGCGWAG 94

>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3032

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = -2

Query: 163 TGRPWSPP---WRSWGARRCGWSG 101
           TG+ W  P   W  +G   CGW+G
Sbjct: 71  TGKSWGKPGYPWPLYGNEGCGWAG 94

>POLG_HCVJ7 (P27961) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70)] (Fragment)
          Length = 736

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = -2

Query: 163 TGRPWSPP---WRSWGARRCGWSG 101
           TG+ W  P   W  +G   CGW+G
Sbjct: 71  TGKSWGKPGYPWPLYGNEGCGWAG 94

>K1196_HUMAN (Q96KM6) Zinc finger protein KIAA1196|
          Length = 892

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 22  RPPTLIHCPAPPRRHHSLYYRSNA---MARRTNHTASPPMNAT 141
           +PP  +  P+ P  H    YRS A      R+ HTA PP   T
Sbjct: 620 KPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEEPT 662


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,292,231
Number of Sequences: 219361
Number of extensions: 499898
Number of successful extensions: 1639
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)