ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast44h08 |
|---|---|
| Clone Library Name | barley_pub |
>SLSG3_BRAOL (P17840) S-locus-specific glycoprotein S13 precursor (SLSG-13)| (Fragment) Length = 434 Score = 71.6 bits (174), Expect = 5e-13 Identities = 42/92 (45%), Positives = 53/92 (57%) Frame = +1 Query: 4 SAGGVFRLGFFVPPGSSDGRAYVGIWYAAIPEQTVVWVANRRNPVVRPPGVLSLSADGRL 183 S G VF LGFF SS R Y+GIWY P +T VWVANR NP+ G L +S + L Sbjct: 50 SPGNVFELGFFKTTSSS--RWYLGIWYKKFPYRTYVWVANRDNPLSNDIGTLKISGN-NL 106 Query: 184 VILDGRNATVWSSDDAADSGGVATRATAQLLD 279 V+LD N +VWS++ G + A+LLD Sbjct: 107 VLLDHSNKSVWSTN--VTRGNERSPVVAELLD 136
>SLSG2_BRAOA (P22553) S-locus-specific glycoprotein BS29-2 precursor| Length = 435 Score = 65.5 bits (158), Expect = 3e-11 Identities = 39/91 (42%), Positives = 53/91 (58%) Frame = +1 Query: 4 SAGGVFRLGFFVPPGSSDGRAYVGIWYAAIPEQTVVWVANRRNPVVRPPGVLSLSADGRL 183 S G V LGFF P SS R Y+G+WY + E+T VWVANR NP+ G L +S + L Sbjct: 50 SPGNVLELGFFRTPSSS--RWYLGMWYKKLSERTYVWVANRDNPLSCSIGTLKIS-NMNL 106 Query: 184 VILDGRNATVWSSDDAADSGGVATRATAQLL 276 V+LD N ++WS++ G + A+LL Sbjct: 107 VLLDHSNKSLWSTNHT--RGNERSPVVAELL 135
>SLSG6_BRAOL (P07761) S-locus-specific glycoprotein S6 precursor (SLSG-6)| Length = 436 Score = 61.2 bits (147), Expect = 6e-10 Identities = 34/74 (45%), Positives = 45/74 (60%) Frame = +1 Query: 4 SAGGVFRLGFFVPPGSSDGRAYVGIWYAAIPEQTVVWVANRRNPVVRPPGVLSLSADGRL 183 S G F LGFF SS R Y+GIWY + ++T VWVANR NP+ G L +S + L Sbjct: 51 SPGNNFELGFFRTNSSS--RWYLGIWYKKLLDRTYVWVANRDNPLSNAIGTLKISGN-NL 107 Query: 184 VILDGRNATVWSSD 225 V+L N +VWS++ Sbjct: 108 VLLGHTNKSVWSTN 121
>SLSG4_BRAOL (P17841) S-locus-specific glycoprotein S14 precursor (SLSG-14)| (Fragment) Length = 434 Score = 61.2 bits (147), Expect = 6e-10 Identities = 34/74 (45%), Positives = 44/74 (59%) Frame = +1 Query: 4 SAGGVFRLGFFVPPGSSDGRAYVGIWYAAIPEQTVVWVANRRNPVVRPPGVLSLSADGRL 183 S G VF LGFF SS R Y+GIWY + ++T VWVANR NP+ G L +S + Sbjct: 48 SPGNVFELGFFRTNSSS--RWYLGIWYKKVSDRTYVWVANRDNPLSSSIGTLKISGNNP- 104 Query: 184 VILDGRNATVWSSD 225 LD N +VWS++ Sbjct: 105 CHLDHSNKSVWSTN 118
>SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase receptor| precursor (EC 2.7.11.1) (S-receptor kinase) (SRK) Length = 849 Score = 60.8 bits (146), Expect = 8e-10 Identities = 30/71 (42%), Positives = 43/71 (60%) Frame = +1 Query: 4 SAGGVFRLGFFVPPGSSDGRAYVGIWYAAIPEQTVVWVANRRNPVVRPPGVLSLSADGRL 183 S G +F +GFF ++ R Y+G+WY + ++T VWVANR NP+ G L +S + L Sbjct: 52 SPGSIFEVGFF----RTNSRWYLGMWYKKVSDRTYVWVANRDNPLSNAIGTLKISGN-NL 106 Query: 184 VILDGRNATVW 216 V+LD N VW Sbjct: 107 VLLDHSNKPVW 117
>SLSG1_BRAOA (P22552) S-locus-specific glycoprotein BS29-1 precursor| Length = 444 Score = 55.5 bits (132), Expect = 4e-08 Identities = 41/96 (42%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Frame = +1 Query: 4 SAGGVFRLGFF--VPPGSSDG--RAYVGIWYAAIP-EQTVVWVANRRNPVVRPPGVLSLS 168 S G VF LGFF S DG R Y+GIWY +T VWVANR N + G L +S Sbjct: 48 SPGDVFELGFFKTTTRNSPDGTDRWYLGIWYKTTSGHRTYVWVANRDNALHNSMGTLKIS 107 Query: 169 ADGRLVILDGRNATVWSSDDAADSGGVATRATAQLL 276 LV+LD N VWS++ +G TA+LL Sbjct: 108 -HASLVLLDHSNTPVWSTN---FTGVAHLPVTAELL 139
>SLSG0_BRAOA (P22551) S-locus-specific glycoprotein precursor| Length = 444 Score = 55.5 bits (132), Expect = 4e-08 Identities = 41/96 (42%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Frame = +1 Query: 4 SAGGVFRLGFF--VPPGSSDG--RAYVGIWYAAIP-EQTVVWVANRRNPVVRPPGVLSLS 168 S G VF LGFF S DG R Y+GIWY +T VWVANR N + G L +S Sbjct: 48 SPGDVFELGFFKTTTRNSPDGTDRWYLGIWYKTTSGHRTYVWVANRDNALHNSMGTLKIS 107 Query: 169 ADGRLVILDGRNATVWSSDDAADSGGVATRATAQLL 276 LV+LD N VWS++ +G TA+LL Sbjct: 108 -HASLVLLDHSNTPVWSTN---FTGVAHLPVTAELL 139
>KPRO_MAIZE (P17801) Putative receptor protein kinase ZmPK1 precursor (EC| 2.7.11.1) Length = 817 Score = 41.2 bits (95), Expect = 7e-04 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Frame = +1 Query: 4 SAGGVFRLGFFVPPGSSDGRAYV-GIWY-----AAIPEQTVVWVANRRNPVVRPPGVLSL 165 S+ G F GF+ A+ +WY AA +T+VW AN PV L+L Sbjct: 50 SSDGTFSSGFY----EVYTHAFTFSVWYSKTEAAAANNKTIVWSANPDRPVHARRSALTL 105 Query: 166 SADGRLVILDGRNATVWSSD 225 DG +V+ D A VW +D Sbjct: 106 QKDGNMVLTDYDGAAVWRAD 125
>ODP2_DICDI (P36413) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) (PDC-E2) (Fragment) Length = 592 Score = 31.6 bits (70), Expect = 0.55 Identities = 15/40 (37%), Positives = 27/40 (67%) Frame = -3 Query: 278 SSSCAVARVATPPESAASSEDHTVALRPSRMTSRPSAERL 159 SSS + ++ +TP S++SS++ T + S+ T+R S ER+ Sbjct: 259 SSSSSSSQESTPSSSSSSSQESTPSQSSSQQTTRKSGERI 298
>COMI_DICDI (Q03380) Comitin (CABP1-related protein p24) (24 kDa actin-binding| protein) Length = 185 Score = 31.6 bits (70), Expect = 0.55 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 148 PGVLSLSADGRLVILDGRNATVWSS 222 P LS+ DG LVI D RN+ +W+S Sbjct: 63 PYRLSMQEDGNLVIYDSRNSAIWAS 87
>VID21_YEAST (Q06337) Chromatin modification-related protein VID21| (ESA1-associated factor 1) (Vacuolar import and degradation protein 21) Length = 982 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +1 Query: 109 VWVANRRNPVVRPPGVLSLSADGRLVILDGRNATVWSSDD 228 ++ NRRN +RPP V SL L R T+W S+D Sbjct: 621 MFYGNRRNHYLRPPAVPSLR------YLQNRTPTIWLSED 654
>DIP2A_HUMAN (Q14689) Disco-interacting protein 2 homolog A| Length = 1571 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -3 Query: 248 TPPESAASSEDHTVALRPSRMTSRP 174 TPP+++++SED RP R+TS P Sbjct: 132 TPPDTSSASEDEGSLRRPGRLTSTP 156
>CURC_CURLA (P19667) Curculin precursor| Length = 158 Score = 30.0 bits (66), Expect = 1.6 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = +1 Query: 109 VWVAN--RRNPVVRPPGVLSLSADGRLVILDGRNATVWSSDDAADSGGVA 252 +W +N RR R L+L +DG LVI D N VW S D+G A Sbjct: 62 IWASNTDRRGSGCR----LTLLSDGNLVIYDHNNNDVWGSACWGDNGKYA 107
>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) (1A1-3B) Length = 966 Score = 29.3 bits (64), Expect = 2.7 Identities = 24/71 (33%), Positives = 33/71 (46%) Frame = -3 Query: 239 ESAASSEDHTVALRPSRMTSRPSAERLRTPGGLTTGFRRLATHTTVCSGMAAYQMPT*AL 60 +S+ASSED+ + L TSRP + + + G R A G+ A Q P A Sbjct: 724 QSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGK---PGVEAGQEPAEA- 779 Query: 59 PSELPGGTKKP 27 LPGG +P Sbjct: 780 GERLPGGENQP 790
>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 894 Score = 29.3 bits (64), Expect = 2.7 Identities = 24/71 (33%), Positives = 33/71 (46%) Frame = -3 Query: 239 ESAASSEDHTVALRPSRMTSRPSAERLRTPGGLTTGFRRLATHTTVCSGMAAYQMPT*AL 60 +S+ASSED+ + L TSRP + + + G R A G+ A Q P A Sbjct: 652 QSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGE---PGVEAGQEPAEA- 707 Query: 59 PSELPGGTKKP 27 LPGG +P Sbjct: 708 GERLPGGENQP 718
>EP1G_DAUCA (Q39688) Epidermis-specific secreted glycoprotein EP1 precursor| (52/54-kDa medium protein) Length = 389 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = +1 Query: 109 VWVANRRNPVVRPPGVLSLSADGRLVILDGRNATVWSSDDA 231 VW ANR NP V L+ DG LV+ W + A Sbjct: 91 VWEANRGNP-VDENATLTFGPDGNLVLARSNGQVAWQTSTA 130
>HAP1_HAEIN (P44596) Adhesion and penetration protein precursor (EC 3.4.21.-)| Length = 1409 Score = 28.5 bits (62), Expect = 4.6 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 13/102 (12%) Frame = +1 Query: 7 AGGVFRLGFFVPPGSSDGRAYVGIWYAAIPEQTVVW-VANRRNPVVRPPGVL-------- 159 AGG++ G FV G + + G + + TV W V N N + G+ Sbjct: 400 AGGLYFEGNFVVKGKQNNITWQGAGVSIGQDATVEWKVHNPENDRLSKIGIGTLLVNGKG 459 Query: 160 ----SLSADGRLVILDGRNATVWSSDDAADSGGVATRATAQL 273 SLSA VILD + + G V+ RAT QL Sbjct: 460 KNLGSLSAGNGKVILDQQADEAGQKQAFKEVGIVSGRATVQL 501
>OGL_DICD3 (P21258) Oligogalacturonate lyase (EC 4.2.2.6)| Length = 388 Score = 28.1 bits (61), Expect = 6.1 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 4/79 (5%) Frame = +1 Query: 31 FFVPPGSSDGRAYV----GIWYAAIPEQTVVWVANRRNPVVRPPGVLSLSADGRLVILDG 198 F+VP GS+ AYV G I V + NR+ + P L + DG L++ DG Sbjct: 244 FWVPNGSA--LAYVSYLKGSTNRFICSVDPVTLENRQLTEMPPCSHLMSNYDGTLMVGDG 301 Query: 199 RNATVWSSDDAADSGGVAT 255 NA V D D GG T Sbjct: 302 CNAPV----DVKDDGGYKT 316
>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2| Length = 1202 Score = 28.1 bits (61), Expect = 6.1 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%) Frame = -3 Query: 248 TPPESAASSEDHTVA----LRPSRMTSRPSAERLRTPGGLTTGFRRLATHTTVCSGMAAY 81 T P S++SS A +RPS TSR + R T L TG + A T +A Sbjct: 288 TSPSSSSSSSSSGFAEPLEIRPSPPTSRGGSSRGGTAILLLTGLEQRAGGLTPTRHLAPQ 347 Query: 80 QMPT*ALPSELPGGTKKPSLNTPPA 6 P ++ + GT+ + PP+ Sbjct: 348 ADPRPSMSLAVVVGTEPSAPPAPPS 372
>DIP2A_MOUSE (Q8BWT5) Disco-interacting protein 2 homolog A| Length = 1523 Score = 28.1 bits (61), Expect = 6.1 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = -3 Query: 248 TPPESAASSEDHTVALRPSRMTS 180 TPP+++++SED RP R+TS Sbjct: 92 TPPDTSSASEDEGSLRRPGRLTS 114
>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22| Length = 881 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -3 Query: 266 AVARVATPPESAASSEDHTVALRPSRMTSRPSAERLRTPGG 144 + RV TPP + S +V+ + S + PS R R+P G Sbjct: 9 SAVRVPTPPPGTSYSPQPSVSRKRSPPSRSPSPRRRRSPPG 49
>C8AP2_MOUSE (Q9WUF3) CASP8-associated protein 2 (FLICE-associated huge protein)| Length = 1962 Score = 27.7 bits (60), Expect = 7.9 Identities = 17/68 (25%), Positives = 28/68 (41%) Frame = -3 Query: 227 SSEDHTVALRPSRMTSRPSAERLRTPGGLTTGFRRLATHTTVCSGMAAYQMPT*ALPSEL 48 S ++ +VA + ++RP PG + G RR H +G A ++P L Sbjct: 923 SDDEESVAQKRLEKSARPRVSAEVQPGKSSPGSRRSTVHVHKDNGRTAVKLPRDRLTWSK 982 Query: 47 PGGTKKPS 24 +PS Sbjct: 983 RSSESRPS 990
>LEC_GALNI (P30617) Mannose-specific lectin precursor (Agglutinin) (LecGNA 2)| Length = 157 Score = 27.7 bits (60), Expect = 7.9 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +1 Query: 157 LSLSADGRLVILDGRNATVWSSDDAADSG 243 LS+ DG LV+ + N +W+S+ +G Sbjct: 77 LSMQTDGNLVVYNPSNKPIWASNTGGQNG 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,352,086 Number of Sequences: 219361 Number of extensions: 538915 Number of successful extensions: 2222 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2216 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
