| Clone Name | bast44h08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191518.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2571 Score = 48.1 bits (24), Expect = 0.015 Identities = 45/52 (86%) Strand = Plus / Plus Query: 71 tcggcatctggtacgccgccatcccggagcagacggtcgtgtgggtcgccaa 122 ||||||| ||||||||| |||||| | ||||| ||||||||||||||||| Sbjct: 203 tcggcatttggtacgccagcatccccggccagaccgtcgtgtgggtcgccaa 254
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.015 Identities = 45/52 (86%) Strand = Plus / Plus Query: 71 tcggcatctggtacgccgccatcccggagcagacggtcgtgtgggtcgccaa 122 ||||||| ||||||||| |||||| | ||||| ||||||||||||||||| Sbjct: 33221112 tcggcatttggtacgccagcatccccggccagaccgtcgtgtgggtcgccaa 33221163
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1070A12 Length = 148449 Score = 48.1 bits (24), Expect = 0.015 Identities = 45/52 (86%) Strand = Plus / Plus Query: 71 tcggcatctggtacgccgccatcccggagcagacggtcgtgtgggtcgccaa 122 ||||||| ||||||||| |||||| | ||||| ||||||||||||||||| Sbjct: 14359 tcggcatttggtacgccagcatccccggccagaccgtcgtgtgggtcgccaa 14410
>emb|CR727560.2|CNS0GOBY Tetraodon nigroviridis full-length cDNA Length = 1362 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 gccacccgcgccaccgcgcagc 271 |||||||||||||||||||||| Sbjct: 718 gccacccgcgccaccgcgcagc 739
>emb|CR726057.2|CNS0GN67 Tetraodon nigroviridis full-length cDNA Length = 1383 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 gccacccgcgccaccgcgcagc 271 |||||||||||||||||||||| Sbjct: 718 gccacccgcgccaccgcgcagc 739
>emb|CR725127.2|CNS0GMGD Tetraodon nigroviridis full-length cDNA Length = 1366 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 gccacccgcgccaccgcgcagc 271 |||||||||||||||||||||| Sbjct: 718 gccacccgcgccaccgcgcagc 739
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Minus Query: 250 gccacccgcgccaccgcgcagctgct 275 ||||||||||||||||||| |||||| Sbjct: 461196 gccacccgcgccaccgcgcggctgct 461171 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cacccgcgccaccgcgcagc 271 |||||||||||||||||||| Sbjct: 2735495 cacccgcgccaccgcgcagc 2735476
>gb|AY221946.3| Anopheles dirus prophenoloxidase mRNA, partial cds Length = 1599 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 agctccgacggcagagcctac 69 ||||||||||||||||||||| Sbjct: 217 agctccgacggcagagcctac 237
>gb|AC167967.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940144D9, complete sequence Length = 114276 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Plus Query: 253 acccgcgccaccgcgcagctgctcg 277 |||||||| |||||||||||||||| Sbjct: 77207 acccgcgcgaccgcgcagctgctcg 77231
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 cgcgccaccgcgcagctgctcgac 279 |||||||||||||||||| ||||| Sbjct: 3853169 cgcgccaccgcgcagctgatcgac 3853192
>ref|NM_184946.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2803 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gtcgtgtgggtcgccaatcg 125 |||||||||||||||||||| Sbjct: 229 gtcgtgtgggtcgccaatcg 248
>ref|XM_366777.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02853.4) partial mRNA Length = 921 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgccaccgcgcagctgctcg 277 |||||||||||||||||||| Sbjct: 556 cgccaccgcgcagctgctcg 537
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 cgcggccgactcgggcggcgtagc 251 ||||||||||||| |||||||||| Sbjct: 1388728 cgcggccgactcgcgcggcgtagc 1388705
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gtcgtgtgggtcgccaatcg 125 |||||||||||||||||||| Sbjct: 19534680 gtcgtgtgggtcgccaatcg 19534699
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 cgcggccgactcgggcggcgtagc 251 ||||||||||||| |||||||||| Sbjct: 2706217 cgcggccgactcgcgcggcgtagc 2706194
>gb|AC091233.8| Oryza sativa chromosome 3 BAC OSJNBa0053G10 genomic sequence, complete sequence Length = 145155 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gtcgtgtgggtcgccaatcg 125 |||||||||||||||||||| Sbjct: 18357 gtcgtgtgggtcgccaatcg 18338
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gtcgtgtgggtcgccaatcg 125 |||||||||||||||||||| Sbjct: 19527707 gtcgtgtgggtcgccaatcg 19527726
>gb|AY150182.1| Balanus amphitrite 70kDa heat shock protein mRNA, complete cds Length = 2252 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cttgtcatcctcgacggtcg 200 |||||||||||||||||||| Sbjct: 1746 cttgtcatcctcgacggtcg 1727
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cgcccggcagctccgacggc 60 |||||||||||||||||||| Sbjct: 456875 cgcccggcagctccgacggc 456894
>dbj|AK107364.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-A09, full insert sequence Length = 1603 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gtcgtgtgggtcgccaatcg 125 |||||||||||||||||||| Sbjct: 1065 gtcgtgtgggtcgccaatcg 1046
>dbj|AK066162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053H05, full insert sequence Length = 2797 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gtcgtgtgggtcgccaatcg 125 |||||||||||||||||||| Sbjct: 329 gtcgtgtgggtcgccaatcg 348 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,257,489 Number of Sequences: 3902068 Number of extensions: 1257489 Number of successful extensions: 23163 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22794 Number of HSP's gapped (non-prelim): 369 length of query: 280 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 258 effective length of database: 17,147,199,772 effective search space: 4423977541176 effective search space used: 4423977541176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)