ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast44h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_191518.1| Oryza sativa (japonica cultivar-group), predic... 48 0.015
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
3dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
4emb|CR727560.2|CNS0GOBY Tetraodon nigroviridis full-length cDNA 44 0.23
5emb|CR726057.2|CNS0GN67 Tetraodon nigroviridis full-length cDNA 44 0.23
6emb|CR725127.2|CNS0GMGD Tetraodon nigroviridis full-length cDNA 44 0.23
7gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 44 0.23
8gb|AY221946.3| Anopheles dirus prophenoloxidase mRNA, partial cds 42 0.92
9gb|AC167967.6| Culex pipiens quinquefasciatus, clone Culex pipie... 42 0.92
10gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 3.7
11ref|NM_184946.2| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
12ref|XM_366777.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 40 3.7
13gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 3.7
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.7
15emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 3.7
16gb|AC091233.8| Oryza sativa chromosome 3 BAC OSJNBa0053G10 genom... 40 3.7
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
18gb|AY150182.1| Balanus amphitrite 70kDa heat shock protein mRNA,... 40 3.7
19dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 3.7
20dbj|AK107364.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
21dbj|AK066162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7

>ref|NM_191518.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2571

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 71  tcggcatctggtacgccgccatcccggagcagacggtcgtgtgggtcgccaa 122
           ||||||| |||||||||  |||||| |  ||||| |||||||||||||||||
Sbjct: 203 tcggcatttggtacgccagcatccccggccagaccgtcgtgtgggtcgccaa 254



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                    
Query: 71       tcggcatctggtacgccgccatcccggagcagacggtcgtgtgggtcgccaa 122
                ||||||| |||||||||  |||||| |  ||||| |||||||||||||||||
Sbjct: 33221112 tcggcatttggtacgccagcatccccggccagaccgtcgtgtgggtcgccaa 33221163



to top

>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1070A12
          Length = 148449

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 71    tcggcatctggtacgccgccatcccggagcagacggtcgtgtgggtcgccaa 122
             ||||||| |||||||||  |||||| |  ||||| |||||||||||||||||
Sbjct: 14359 tcggcatttggtacgccagcatccccggccagaccgtcgtgtgggtcgccaa 14410



to top

>emb|CR727560.2|CNS0GOBY Tetraodon nigroviridis full-length cDNA
          Length = 1362

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 250 gccacccgcgccaccgcgcagc 271
           ||||||||||||||||||||||
Sbjct: 718 gccacccgcgccaccgcgcagc 739



to top

>emb|CR726057.2|CNS0GN67 Tetraodon nigroviridis full-length cDNA
          Length = 1383

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 250 gccacccgcgccaccgcgcagc 271
           ||||||||||||||||||||||
Sbjct: 718 gccacccgcgccaccgcgcagc 739



to top

>emb|CR725127.2|CNS0GMGD Tetraodon nigroviridis full-length cDNA
          Length = 1366

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 250 gccacccgcgccaccgcgcagc 271
           ||||||||||||||||||||||
Sbjct: 718 gccacccgcgccaccgcgcagc 739



to top

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 250    gccacccgcgccaccgcgcagctgct 275
              ||||||||||||||||||| ||||||
Sbjct: 461196 gccacccgcgccaccgcgcggctgct 461171



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     cacccgcgccaccgcgcagc 271
               ||||||||||||||||||||
Sbjct: 2735495 cacccgcgccaccgcgcagc 2735476



to top

>gb|AY221946.3| Anopheles dirus prophenoloxidase mRNA, partial cds
          Length = 1599

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 49  agctccgacggcagagcctac 69
           |||||||||||||||||||||
Sbjct: 217 agctccgacggcagagcctac 237



to top

>gb|AC167967.6| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940144D9, complete sequence
          Length = 114276

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 253   acccgcgccaccgcgcagctgctcg 277
             |||||||| ||||||||||||||||
Sbjct: 77207 acccgcgcgaccgcgcagctgctcg 77231



to top

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 256     cgcgccaccgcgcagctgctcgac 279
               |||||||||||||||||| |||||
Sbjct: 3853169 cgcgccaccgcgcagctgatcgac 3853192



to top

>ref|NM_184946.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2803

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 106 gtcgtgtgggtcgccaatcg 125
           ||||||||||||||||||||
Sbjct: 229 gtcgtgtgggtcgccaatcg 248



to top

>ref|XM_366777.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG02853.4) partial mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 cgccaccgcgcagctgctcg 277
           ||||||||||||||||||||
Sbjct: 556 cgccaccgcgcagctgctcg 537



to top

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 228     cgcggccgactcgggcggcgtagc 251
               ||||||||||||| ||||||||||
Sbjct: 1388728 cgcggccgactcgcgcggcgtagc 1388705



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 106      gtcgtgtgggtcgccaatcg 125
                ||||||||||||||||||||
Sbjct: 19534680 gtcgtgtgggtcgccaatcg 19534699



to top

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 228     cgcggccgactcgggcggcgtagc 251
               ||||||||||||| ||||||||||
Sbjct: 2706217 cgcggccgactcgcgcggcgtagc 2706194



to top

>gb|AC091233.8| Oryza sativa chromosome 3 BAC OSJNBa0053G10 genomic sequence, complete
             sequence
          Length = 145155

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gtcgtgtgggtcgccaatcg 125
             ||||||||||||||||||||
Sbjct: 18357 gtcgtgtgggtcgccaatcg 18338



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 106      gtcgtgtgggtcgccaatcg 125
                ||||||||||||||||||||
Sbjct: 19527707 gtcgtgtgggtcgccaatcg 19527726



to top

>gb|AY150182.1| Balanus amphitrite 70kDa heat shock protein mRNA, complete cds
          Length = 2252

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  cttgtcatcctcgacggtcg 200
            ||||||||||||||||||||
Sbjct: 1746 cttgtcatcctcgacggtcg 1727



to top

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     cgcccggcagctccgacggc 60
              ||||||||||||||||||||
Sbjct: 456875 cgcccggcagctccgacggc 456894



to top

>dbj|AK107364.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-A09, full
            insert sequence
          Length = 1603

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  gtcgtgtgggtcgccaatcg 125
            ||||||||||||||||||||
Sbjct: 1065 gtcgtgtgggtcgccaatcg 1046



to top

>dbj|AK066162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053H05, full
           insert sequence
          Length = 2797

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 106 gtcgtgtgggtcgccaatcg 125
           ||||||||||||||||||||
Sbjct: 329 gtcgtgtgggtcgccaatcg 348


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,257,489
Number of Sequences: 3902068
Number of extensions: 1257489
Number of successful extensions: 23163
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22794
Number of HSP's gapped (non-prelim): 369
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top