ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast44h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 38 6.9
2gb|AF483210.1| Canis familiaris polycystin-1 (PKD1) gene, partia... 38 6.9
3gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple... 38 6.9
4dbj|AB096203.1| Baboon herpesvirus 2 UL21, UL20, UL19, UL18, UL1... 38 6.9

>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 104   gcggccggtcgacggcgac 122
             |||||||||||||||||||
Sbjct: 45368 gcggccggtcgacggcgac 45386



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>gb|AF483210.1| Canis familiaris polycystin-1 (PKD1) gene, partial cds
          Length = 39089

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  cggcgacatgtgggaaggg 134
            |||||||||||||||||||
Sbjct: 8191 cggcgacatgtgggaaggg 8209



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>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 102   gggcggccggtcgacggcg 120
             |||||||||||||||||||
Sbjct: 40384 gggcggccggtcgacggcg 40366



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>dbj|AB096203.1| Baboon herpesvirus 2 UL21, UL20, UL19, UL18, UL15 genes for tegument
            protein, integral membrane protein, major capsid protein,
            capsid protein, DNA packaging protein, partial and
            complete cds
          Length = 8004

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 102  gggcggccggtcgacggcg 120
            |||||||||||||||||||
Sbjct: 3018 gggcggccggtcgacggcg 3036


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 571,875
Number of Sequences: 3902068
Number of extensions: 571875
Number of successful extensions: 40258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40241
Number of HSP's gapped (non-prelim): 17
length of query: 144
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 123
effective length of database: 17,151,101,840
effective search space: 2109585526320
effective search space used: 2109585526320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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