Clone Information

BLAST Search Result

Clone Name	bast44g11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	32	0.32
2	KCNH3_HUMAN (Q9ULD8) Potassium voltage-gated channel subfamily H...	32	0.54
3	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	31	0.93
4	KCNH3_RAT (O89047) Potassium voltage-gated channel subfamily H m...	30	1.6
5	KCNH3_MOUSE (Q9WVJ0) Potassium voltage-gated channel subfamily H...	30	1.6
6	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	30	1.6
7	CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)	30	1.6
8	VNUA_PRVKA (P33485) Probable nuclear antigen	30	2.1
9	BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-assoc...	24	2.7
10	CP007_HUMAN (Q9Y2B5) Protein C16orf7 (Protein ATP-BL)	29	2.7
11	CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain...	29	2.7
12	Y665_TREPA (O83671) Hypothetical protein TP0665	29	2.7
13	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	29	2.7
14	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	29	3.5
15	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	29	3.5
16	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	29	3.5
17	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	29	3.5
18	CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta...	29	3.5
19	BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2....	29	3.5
20	CO2A1_CHICK (P02460) Collagen alpha-1(II) chain precursor (Fragm...	29	3.5
21	PRA_MYCTU (O53426) Proline-rich antigen homolog	27	3.9
22	CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor	28	4.6
23	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	28	4.6
24	COL40_CAEEL (P34804) Cuticle collagen 40	28	4.6
25	YT41_CAEEL (Q11069) Hypothetical protein B0416.1 in chromosome X	28	4.6
26	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	28	4.6
27	HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated...	28	4.6
28	CDAN1_HUMAN (Q8IWY9) Codanin-1	28	4.6
29	VGLG_HHV2H (P13290) Glycoprotein G	28	6.0
30	NU5C_HORVU (Q32440) NAD(P)H-quinone oxidoreductase chain 5, chlo...	28	6.0
31	TIP60_DROME (Q960X4) Histone acetyltransferase Tip60 (EC 2.3.1.48)	28	6.0
32	NU5C_SORBI (Q33066) NAD(P)H-quinone oxidoreductase chain 5, chlo...	28	6.0
33	HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated c...	28	6.0
34	Y1583_RHOPA (Q6N9G6) UPF0283 membrane protein RPA1583	28	6.0
35	HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated...	28	6.0
36	CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor	28	6.0
37	NU5C_ORYSA (P12129) NAD(P)H-quinone oxidoreductase chain 5, chlo...	28	7.8
38	NU5C_ORYNI (Q6ENB0) NAD(P)H-quinone oxidoreductase chain 5, chlo...	28	7.8
39	VCO7_ADE05 (P68951) Major core protein precursor (Protein VII) (...	28	7.8
40	VCO7_ADE02 (P68950) Major core protein precursor (Protein VII) (...	28	7.8
41	ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoce...	28	7.8
42	RL11_DESVH (P62433) 50S ribosomal protein L11	28	7.8

>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 189 GLHAGIHRPPPSARKTVAGPAEPPLSAGAPG 281
           GL  G   P P   K  AGP  PP +AG PG
Sbjct: 693 GLRGGAGPPGPEGGKGAAGPPGPPGAAGTPG 723

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>KCNH3_HUMAN (Q9ULD8) Potassium voltage-gated channel subfamily H member 3|
           (Voltage-gated potassium channel subunit Kv12.2)
           (Ether-a-go-go-like potassium channel 2) (ELK channel 2)
           (ELK2) (Brain-specific eag-like channel 1) (BEC1)
          Length = 1083

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 152 PAGADEPSPPWPWPSCRNPQTASFREEDRRRPCRTAAVGRG-PGAA 286
           PA ADEPS P   P C +  +A+     RR   R    GRG PG A
Sbjct: 743 PAPADEPSSPLLSPGCTSSSSAAKLLSPRRTAPRPRLGGRGRPGRA 788

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +3

Query: 189 GLHAGIHRPPPSARKTVAGPAEPPLSAGAPG 281
           G   G   P P   K  AGP  PP SAG PG
Sbjct: 537 GPRGGAGPPGPEGGKGAAGPPGPPGSAGTPG 567

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>KCNH3_RAT (O89047) Potassium voltage-gated channel subfamily H member 3|
           (Voltage-gated potassium channel subunit Kv12.2)
           (Ether-a-go-go-like potassium channel 2) (ELK channel 2)
           (rElk2) (Brain-specific eag-like channel 1) (BEC1)
          Length = 1087

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +2

Query: 152 PAGADEPSPPWPWPSCRNPQTASFREEDRRRPCRTAAVGRG 274
           PA ADEPS P   P C +  +A+     RR   R    GRG
Sbjct: 746 PAPADEPSSPLLSPGCTSSSSAAKLLSPRRTAPRPRLGGRG 786

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>KCNH3_MOUSE (Q9WVJ0) Potassium voltage-gated channel subfamily H member 3|
           (Voltage-gated potassium channel subunit Kv12.2)
           (Ether-a-go-go-like potassium channel 2) (ELK channel 2)
           (mElk2)
          Length = 1087

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +2

Query: 152 PAGADEPSPPWPWPSCRNPQTASFREEDRRRPCRTAAVGRG 274
           PA ADEPS P   P C +  +A+     RR   R    GRG
Sbjct: 746 PAPADEPSSPLLSPGCTSSSSAAKLLSPRRTAPRPRLGGRG 786

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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 189 GLHAGIHRPPPSARKTVAGPAEPPLSAGAPG 281
           GL  G   P P   K  AGP  PP ++G PG
Sbjct: 692 GLRGGAGPPGPEGGKGPAGPPGPPGTSGPPG 722

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>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)|
          Length = 779

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = +3

Query: 189 GLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
           GL   I  P P  R   AGPA PP   G PG P
Sbjct: 719 GLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPP 751



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 219 PSARKTVAGPAEPPLSAGAPGR 284
           PS     AGP  PP SAG+PG+
Sbjct: 693 PSGASGPAGPRGPPGSAGSPGK 714

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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 20/47 (42%), Positives = 22/47 (46%)
 Frame = +1

Query: 145  QAPRRRRRAFSALAVAFMPESTDRLLPRGRPSPALQNRRCRQGPRGG 285
            + PR RRR          P  TDR+ PRG PSP    R CR   R G
Sbjct: 1626 RGPRPRRR----------PGLTDRVPPRGGPSP----RGCRGAGRAG 1658

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>BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3) (Protein G3)
          Length = 1132

 Score = 24.3 bits (51), Expect(2) = 2.7
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +2

Query: 104 GVPMGKKGLTSIFSKLPAGADEPSPPWPWPSCRNPQT 214
           GVP   +G+T            P PP P P     QT
Sbjct: 638 GVPAFLQGMTDFLQATQTAPPPPPPPPPPPPAPEQQT 674



 Score = 23.5 bits (49), Expect(2) = 2.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 213 PPPSARKTVAGPAEPPLSAGAPG 281
           PP   ++T+  P  P   AG+PG
Sbjct: 667 PPAPEQQTMPPPGSPSGGAGSPG 689

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>CP007_HUMAN (Q9Y2B5) Protein C16orf7 (Protein ATP-BL)|
          Length = 438

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 174 LRPGRGLHAGIHRPPPSAR-KTVAGPAEPPLSAGAPGRP 287
           LRP + LH  +  P PSA  +    P  PPL  G  G P
Sbjct: 356 LRPSQSLHCMLSPPEPSAAPRPQDSPPTPPLQPGPWGLP 394

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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1419

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 189  GLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
            G+   I  P P  R    GPA PP + G PG P
Sbjct: 1111 GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1143

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>Y665_TREPA (O83671) Hypothetical protein TP0665|
          Length = 251

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 110 PMGKKGLTSIFSKLPAGADEPSPPWPWP 193
           P  K+G T ++ K P G +   PPW  P
Sbjct: 209 PHSKRGRTKLYRKEPPGDNRSPPPWQEP 236

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1418

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 189  GLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
            G+   I  P P  R    GPA PP + G PG P
Sbjct: 1110 GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1142

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 189 GLHAGIHRPPPSARKTVAGPAEPPLSAGAPG 281
           G   G   P P   K  AGP  PP ++G+PG
Sbjct: 692 GARGGAGPPGPEGGKGPAGPPGPPGASGSPG 722

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 219  PSARKTVAGPAEPPLSAGAPGR 284
            PS     AGP  PP SAGAPG+
Sbjct: 1131 PSGASGPAGPRGPPGSAGAPGK 1152



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +3

Query: 189  GLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
            GL   I  P P  R   AGP  PP   G PG P
Sbjct: 1157 GLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPP 1189

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 189  GLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
            GL   I  P P  R   +GPA PP   G PG P
Sbjct: 1146 GLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPP 1178



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 219  PSARKTVAGPAEPPLSAGAPGR 284
            PS     AGP  PP SAG+PG+
Sbjct: 1120 PSGASGPAGPRGPPGSAGSPGK 1141

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 189  GLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
            GL   I  P P  R   +GPA PP   G PG P
Sbjct: 1146 GLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPP 1178



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 219  PSARKTVAGPAEPPLSAGAPGR 284
            PS     AGP  PP SAG+PG+
Sbjct: 1120 PSGASGPAGPRGPPGSAGSPGK 1141

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>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1459

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 189  GLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
            G+   I  P P  R    GP  PP S G PG P
Sbjct: 1151 GIPGPIGPPGPRGRSGETGPVGPPGSPGPPGPP 1183

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>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1|
           kinase) (SAD1A)
          Length = 794

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 177 RPGRGLHAGIHRPPPSARKT-VAGPAEPPLSAG 272
           R  RG  AG   PPPSAR T + GP   P S+G
Sbjct: 497 RGPRGGGAGEQPPPPSARSTPLPGPPGSPRSSG 529

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>CO2A1_CHICK (P02460) Collagen alpha-1(II) chain precursor (Fragment)|
          Length = 369

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 189 GLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
           G+   I  P P  R    GPA PP + G PG P
Sbjct: 61  GMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPP 93

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>PRA_MYCTU (O53426) Proline-rich antigen homolog|
          Length = 240

 Score = 26.6 bits (57), Expect(2) = 3.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 198 AGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
           +G H PPP+A    +G A PP  +   G P
Sbjct: 21  SGGHEPPPAAPPGGSGYAPPPPPSSGSGYP 50



 Score = 20.8 bits (42), Expect(2) = 3.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 152 PAGADEPSPPWPWPS 196
           P G+  P PP P PS
Sbjct: 7   PGGSYPPPPPPPGPS 21

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>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +3

Query: 189  GLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
            GL   I  P P  R   AGP  PP   G PG P
Sbjct: 1153 GLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPP 1185



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 213  PPPSARKTVAGPAEPPLSAGAPGRP 287
            P P   +   GPA PP + GAPG P
Sbjct: 1026 PGPKGDRGETGPAGPPGAPGAPGAP 1050



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 219  PSARKTVAGPAEPPLSAGAPGR 284
            PS     AGP  PP SAG+PG+
Sbjct: 1127 PSGASGPAGPRGPPGSAGSPGK 1148

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 177  RPGRGLHAGIHRPP-PSARKTVAGPAEPPLSAGAPG 281
            + GRG + G   PP P   +  +GPA PP   G PG
Sbjct: 951  KDGRGGYPGPIGPPGPRGNRGESGPAGPPGQPGLPG 986

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>COL40_CAEEL (P34804) Cuticle collagen 40|
          Length = 306

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 198 AGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
           AG   P P+     AGP   P +AGAPG P
Sbjct: 253 AGASEPGPAGPAGDAGPDGAPGNAGAPGAP 282

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>YT41_CAEEL (Q11069) Hypothetical protein B0416.1 in chromosome X|
          Length = 1203

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = -3

Query: 237  RSSSRKEAVCGF----RXXXXXXXXXXXSAPAGSLEKMEV--RPFLPIGTPTRLERRDYR 76
            R  S + A+  F    +           +AP+ S  ++E+   P     TP R+E++   
Sbjct: 964  RDMSYRTAIQSFDQNSQSASASSSKSTTTAPSNSEMRIEITENPLHTYITPLRIEKKSSA 1023

Query: 75   ETNESRKEMSSSVERES 25
             ++ S  + SSS+E+++
Sbjct: 1024 SSSSSSHQPSSSIEKQA 1040

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 180  PGRGLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
            PGR   AG     P   +   GPA PP + GAPG P
Sbjct: 1013 PGRDGAAG-----PKGDRGETGPAGPPGAPGAPGAP 1043

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>HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3 (Hyperpolarization-activated
           cation channel 3) (HAC-3)
          Length = 779

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
 Frame = +3

Query: 180 PGRGLHAGIHR----------PPPSARKTVAGPAEPPLSAGAPGRP 287
           P R LHA + R          PPP       GP   PLSA  P  P
Sbjct: 680 PARTLHASLSRTGRSQVSLLGPPPGGGARRLGPRGRPLSASQPSLP 725

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>CDAN1_HUMAN (Q8IWY9) Codanin-1|
          Length = 1226

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 154 RRRRRAFSALAVAFMPESTDRLLPRGRPSPA 246
           R  R+ F    + F+ E + R+LP+G P+PA
Sbjct: 43  RALRKEFVPFLLNFLREQSSRVLPQGPPTPA 73

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>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 216 PPSARKTVAGPAEPPLSAGAPGR 284
           PP A +   GP  PP+ AG P R
Sbjct: 207 PPQAARAEGGPCVPPVPAGRPWR 229

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>NU5C_HORVU (Q32440) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 5)
           (NADH-plastoquinone oxidoreductase chain 5) (Fragment)
          Length = 705

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   HSITSTTFSLYARAHLLPRFVRLPVIPSF 93
           H+ T     ++  A LLP F+ LP+I SF
Sbjct: 257 HAATMVAAEIFLLARLLPLFISLPLIMSF 285

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>TIP60_DROME (Q960X4) Histone acetyltransferase Tip60 (EC 2.3.1.48)|
          Length = 541

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 180 PGRGLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
           PG G  A I + P  A  +V  PA  P S   PG P
Sbjct: 119 PGSGALAAIPQTPTGASGSVPPPAGIPNSVAPPGTP 154

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>NU5C_SORBI (Q33066) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 5)
           (NADH-plastoquinone oxidoreductase chain 5) (Fragment)
          Length = 702

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   HSITSTTFSLYARAHLLPRFVRLPVIPSF 93
           H+ T     ++  A LLP F+ LP+I SF
Sbjct: 257 HAATMVAAGIFLLARLLPLFISLPLIMSF 285

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>HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3
          Length = 780

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
 Frame = +3

Query: 180 PGRGLHAGIHR----------PPPSARKTVAGPAEPPLSAGAPGRP 287
           P R LHA + R          PPP       GP   PLSA  P  P
Sbjct: 681 PARTLHASLSRTGRSQVSLLGPPPGGGGRRLGPRGRPLSASQPSLP 726

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>Y1583_RHOPA (Q6N9G6) UPF0283 membrane protein RPA1583|
          Length = 369

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 213 PPPSARKTVAGPAEPPLSA 269
           PPP AR  +A  AEPP+SA
Sbjct: 56  PPPRARVELAREAEPPISA 74

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>HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3
          Length = 774

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
 Frame = +3

Query: 180 PGRGLHAGIHR----------PPPSARKTVAGPAEPPLSAGAPGRP 287
           P R LHA + R          PPP       GP   PLSA  P  P
Sbjct: 675 PARTLHASLSRAGRSQVSLLGPPPGGGGRRLGPRGRPLSASQPSLP 720

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>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 189 GLHAGIHRPPPSARKTVAGPAEPPLSAGAPGRP 287
           GL   I  P P       GP+ PP   G PGRP
Sbjct: 127 GLPGEIGTPGPKGDPGPEGPSGPPGPPGKPGRP 159

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>NU5C_ORYSA (P12129) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 5)
           (NADH-plastoquinone oxidoreductase chain 5)
          Length = 734

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   HSITSTTFSLYARAHLLPRFVRLPVIPSF 93
           H+ T     ++  A LLP F+ LP+I SF
Sbjct: 265 HATTMVAAGIFLIARLLPLFISLPLIMSF 293

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>NU5C_ORYNI (Q6ENB0) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 5)
           (NADH-plastoquinone oxidoreductase chain 5)
          Length = 734

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   HSITSTTFSLYARAHLLPRFVRLPVIPSF 93
           H+ T     ++  A LLP F+ LP+I SF
Sbjct: 265 HAATMVAAGIFLIARLLPLFISLPLIMSF 293

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>VCO7_ADE05 (P68951) Major core protein precursor (Protein VII) (pVII)|
          Length = 198

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 174 LRPGRGLHAGIHRPPPSARKTVAGPAEPPLSAGAPGR 284
           +R  R L AGI   PP +R+  A  A   +SA   GR
Sbjct: 137 MRAARRLAAGIVTVPPRSRRRAAAAAAAAISAMTQGR 173

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>VCO7_ADE02 (P68950) Major core protein precursor (Protein VII) (pVII)|
          Length = 198

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 174 LRPGRGLHAGIHRPPPSARKTVAGPAEPPLSAGAPGR 284
           +R  R L AGI   PP +R+  A  A   +SA   GR
Sbjct: 137 MRAARRLAAGIVTVPPRSRRRAAAAAAAAISAMTQGR 173

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>ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 474

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 228 RKTVAGPAEPPLSAGAPGRP 287
           R+ ++GPA PP  A APG P
Sbjct: 263 RRFLSGPARPPSPAPAPGSP 282

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>RL11_DESVH (P62433) 50S ribosomal protein L11|
          Length = 140

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 113 MGKKGLTSIFSKLPAGADEPSPP 181
           M KK +  I  ++PAGA  PSPP
Sbjct: 1   MAKKEVAKIKLQIPAGAANPSPP 23


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,596,453
Number of Sequences: 219361
Number of extensions: 777661
Number of successful extensions: 4900
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4852
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result