ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast44g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_955420.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.061
2ref|XM_325405.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.061
3ref|XM_480206.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.8
4ref|NM_189076.2| Oryza sativa (japonica cultivar-group), mRNA 40 3.8
5gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
6emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 3.8
7emb|AJ781401.1| Cherry chlorotic rusty spot associated partitivi... 40 3.8
8gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 3.8
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
11gb|AF435645.2| Oryza sativa CSLF6 mRNA, partial cds 40 3.8
12gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.8
13dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
14dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
15dbj|AK107140.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
16dbj|AK106763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
17dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8 
>ref|XM_955420.1| Neurospora crassa OR74A hypothetical protein (NCU05551.1) partial
           mRNA
          Length = 762

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 132 cctccatcttctccaagctcccc 154
           |||||||||||||||||||||||
Sbjct: 392 cctccatcttctccaagctcccc 414
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>ref|XM_325405.1| Neurospora crassa OR74A hypothetical protein (NCU05551.1) partial
           mRNA
          Length = 762

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 132 cctccatcttctccaagctcccc 154
           |||||||||||||||||||||||
Sbjct: 392 cctccatcttctccaagctcccc 414
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>ref|XM_480206.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2084

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 142 ctccaagctccccgccggcg 161
           ||||||||||||||||||||
Sbjct: 496 ctccaagctccccgccggcg 477
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>ref|NM_189076.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3707

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  ctccaagctccccgccggcg 161
            ||||||||||||||||||||
Sbjct: 2744 ctccaagctccccgccggcg 2763
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>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0076K20, complete sequence
          Length = 127338

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   tcacctccatcttctccaagctcc 152
             |||||||||||||||||| |||||
Sbjct: 84830 tcacctccatcttctccaggctcc 84807
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 146     aagctccccgccggcgccgacgag 169
               |||||| |||||||||||||||||
Sbjct: 1031153 aagctcgccgccggcgccgacgag 1031130
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>emb|AJ781401.1| Cherry chlorotic rusty spot associated partitivirus RdRp gene for
            RNA-dependent RNA polymerase, segment 1, genomic RNA
          Length = 2021

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   ctcaaccactttctctctct 37
            ||||||||||||||||||||
Sbjct: 1917 ctcaaccactttctctctct 1936
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     ccccgccggcgccgacgagc 170
               ||||||||||||||||||||
Sbjct: 2577164 ccccgccggcgccgacgagc 2577145
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 129     tcacctccatcttctccaagctcc 152
               |||||||||||||||||| |||||
Sbjct: 2641968 tcacctccatcttctccaggctcc 2641991
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 142     ctccaagctccccgccggcg 161
               ||||||||||||||||||||
Sbjct: 3538996 ctccaagctccccgccggcg 3538977
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>gb|AF435645.2| Oryza sativa CSLF6 mRNA, partial cds
          Length = 2135

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  ctccaagctccccgccggcg 161
            ||||||||||||||||||||
Sbjct: 1129 ctccaagctccccgccggcg 1148
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     gctccccgccggcgccgacg 167
               ||||||||||||||||||||
Sbjct: 2568333 gctccccgccggcgccgacg 2568352
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>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0577B11
          Length = 180355

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   ctccaagctccccgccggcg 161
             ||||||||||||||||||||
Sbjct: 17502 ctccaagctccccgccggcg 17483
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>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0672D01
          Length = 146954

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   ctccaagctccccgccggcg 161
             ||||||||||||||||||||
Sbjct: 94713 ctccaagctccccgccggcg 94694
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>dbj|AK107140.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D02, full
           insert sequence
          Length = 1369

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 129 tcacctccatcttctccaagctcc 152
           |||||||||||||||||| |||||
Sbjct: 119 tcacctccatcttctccaggctcc 142
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>dbj|AK106763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E08, full
           insert sequence
          Length = 2084

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 142 ctccaagctccccgccggcg 161
           ||||||||||||||||||||
Sbjct: 496 ctccaagctccccgccggcg 477
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>dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J18, full
            insert sequence
          Length = 3707

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  ctccaagctccccgccggcg 161
            ||||||||||||||||||||
Sbjct: 2744 ctccaagctccccgccggcg 2763
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 129     tcacctccatcttctccaagctcc 152
               |||||||||||||||||| |||||
Sbjct: 2650999 tcacctccatcttctccaggctcc 2651022


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,342,007
Number of Sequences: 3902068
Number of extensions: 2342007
Number of successful extensions: 51708
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51335
Number of HSP's gapped (non-prelim): 373
length of query: 287
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 265
effective length of database: 17,147,199,772
effective search space: 4544007939580
effective search space used: 4544007939580
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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