ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast44g08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence Length = 150416 Score = 381 bits (192), Expect = e-102 Identities = 255/276 (92%) Strand = Plus / Plus Query: 88 gatgtcggggcagacgcagagactgaacgtggtgccgacggtgacgatgctcggggtggt 147 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct: 126205 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtgacgatgctcggggtcat 126264 Query: 148 gaaggcgggcctggtcggcgccacgcgggggcacgcgctgctcaagaagaagtcggacgc 207 |||||| | || ||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 126265 gaaggcccggctcgtcggcgccacccgcggccacgcgctcctcaagaagaagtcggacgc 126324 Query: 208 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccaccaaggagtccatggg 267 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 126325 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccgccaaggagtccatggg 126384 Query: 268 cgaggccatgcgcgcctcctccttctcgctcgccgaggccaagtacgtggccggcgacgg 327 ||||||||| | || ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 126385 ggaggccatgagggcgtcctccttctccctcgccgaggccaagtacgtcgccggcgacgg 126444 Query: 328 cgtgcgccacgtcgtgctccagtccgtccgctccgc 363 ||| ||||||||||| |||||||||||||||||||| Sbjct: 126445 cgtccgccacgtcgtcctccagtccgtccgctccgc 126480
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 381 bits (192), Expect = e-102 Identities = 255/276 (92%) Strand = Plus / Plus Query: 88 gatgtcggggcagacgcagagactgaacgtggtgccgacggtgacgatgctcggggtggt 147 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct: 32766772 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtgacgatgctcggggtcat 32766831 Query: 148 gaaggcgggcctggtcggcgccacgcgggggcacgcgctgctcaagaagaagtcggacgc 207 |||||| | || ||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 32766832 gaaggcccggctcgtcggcgccacccgcggccacgcgctcctcaagaagaagtcggacgc 32766891 Query: 208 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccaccaaggagtccatggg 267 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 32766892 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccgccaaggagtccatggg 32766951 Query: 268 cgaggccatgcgcgcctcctccttctcgctcgccgaggccaagtacgtggccggcgacgg 327 ||||||||| | || ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 32766952 ggaggccatgagggcgtcctccttctccctcgccgaggccaagtacgtcgccggcgacgg 32767011 Query: 328 cgtgcgccacgtcgtgctccagtccgtccgctccgc 363 ||| ||||||||||| |||||||||||||||||||| Sbjct: 32767012 cgtccgccacgtcgtcctccagtccgtccgctccgc 32767047
>dbj|AK067501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110H12, full insert sequence Length = 1438 Score = 381 bits (192), Expect = e-102 Identities = 255/276 (92%) Strand = Plus / Plus Query: 88 gatgtcggggcagacgcagagactgaacgtggtgccgacggtgacgatgctcggggtggt 147 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct: 226 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtgacgatgctcggggtcat 285 Query: 148 gaaggcgggcctggtcggcgccacgcgggggcacgcgctgctcaagaagaagtcggacgc 207 |||||| | || ||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 286 gaaggcccggctcgtcggcgccacccgcggccacgcgctcctcaagaagaagtcggacgc 345 Query: 208 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccaccaaggagtccatggg 267 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 346 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccgccaaggagtccatggg 405 Query: 268 cgaggccatgcgcgcctcctccttctcgctcgccgaggccaagtacgtggccggcgacgg 327 ||||||||| | || ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 406 ggaggccatgagggcgtcctccttctccctcgccgaggccaagtacgtcgccggcgacgg 465 Query: 328 cgtgcgccacgtcgtgctccagtccgtccgctccgc 363 ||| ||||||||||| |||||||||||||||||||| Sbjct: 466 cgtccgccacgtcgtcctccagtccgtccgctccgc 501
>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete sequence Length = 91539 Score = 381 bits (192), Expect = e-102 Identities = 255/276 (92%) Strand = Plus / Plus Query: 88 gatgtcggggcagacgcagagactgaacgtggtgccgacggtgacgatgctcggggtggt 147 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct: 37018 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtgacgatgctcggggtcat 37077 Query: 148 gaaggcgggcctggtcggcgccacgcgggggcacgcgctgctcaagaagaagtcggacgc 207 |||||| | || ||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 37078 gaaggcccggctcgtcggcgccacccgcggccacgcgctcctcaagaagaagtcggacgc 37137 Query: 208 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccaccaaggagtccatggg 267 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 37138 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccgccaaggagtccatggg 37197 Query: 268 cgaggccatgcgcgcctcctccttctcgctcgccgaggccaagtacgtggccggcgacgg 327 ||||||||| | || ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 37198 ggaggccatgagggcgtcctccttctccctcgccgaggccaagtacgtcgccggcgacgg 37257 Query: 328 cgtgcgccacgtcgtgctccagtccgtccgctccgc 363 ||| ||||||||||| |||||||||||||||||||| Sbjct: 37258 cgtccgccacgtcgtcctccagtccgtccgctccgc 37293
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05, complete sequence Length = 142556 Score = 381 bits (192), Expect = e-102 Identities = 255/276 (92%) Strand = Plus / Plus Query: 88 gatgtcggggcagacgcagagactgaacgtggtgccgacggtgacgatgctcggggtggt 147 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct: 29062 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtgacgatgctcggggtcat 29121 Query: 148 gaaggcgggcctggtcggcgccacgcgggggcacgcgctgctcaagaagaagtcggacgc 207 |||||| | || ||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 29122 gaaggcccggctcgtcggcgccacccgcggccacgcgctcctcaagaagaagtcggacgc 29181 Query: 208 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccaccaaggagtccatggg 267 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 29182 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccgccaaggagtccatggg 29241 Query: 268 cgaggccatgcgcgcctcctccttctcgctcgccgaggccaagtacgtggccggcgacgg 327 ||||||||| | || ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 29242 ggaggccatgagggcgtcctccttctccctcgccgaggccaagtacgtcgccggcgacgg 29301 Query: 328 cgtgcgccacgtcgtgctccagtccgtccgctccgc 363 ||| ||||||||||| |||||||||||||||||||| Sbjct: 29302 cgtccgccacgtcgtcctccagtccgtccgctccgc 29337
>ref|XM_474080.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 810 Score = 379 bits (191), Expect = e-102 Identities = 254/275 (92%) Strand = Plus / Plus Query: 89 atgtcggggcagacgcagagactgaacgtggtgccgacggtgacgatgctcggggtggtg 148 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || Sbjct: 1 atgtcggggcagacgcagcgcctgaacgtggtgccgacggtgacgatgctcggggtcatg 60 Query: 149 aaggcgggcctggtcggcgccacgcgggggcacgcgctgctcaagaagaagtcggacgcg 208 ||||| | || ||||||||||| || || |||||||| ||||||||||||||||||||| Sbjct: 61 aaggcccggctcgtcggcgccacccgcggccacgcgctcctcaagaagaagtcggacgcg 120 Query: 209 ctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccaccaaggagtccatgggc 268 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 121 ctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccgccaaggagtccatgggg 180 Query: 269 gaggccatgcgcgcctcctccttctcgctcgccgaggccaagtacgtggccggcgacggc 328 ||||||||| | || ||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 181 gaggccatgagggcgtcctccttctccctcgccgaggccaagtacgtcgccggcgacggc 240 Query: 329 gtgcgccacgtcgtgctccagtccgtccgctccgc 363 || ||||||||||| |||||||||||||||||||| Sbjct: 241 gtccgccacgtcgtcctccagtccgtccgctccgc 275
>dbj|AK106989.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A07, full insert sequence Length = 1144 Score = 373 bits (188), Expect = e-100 Identities = 254/276 (92%) Strand = Plus / Plus Query: 88 gatgtcggggcagacgcagagactgaacgtggtgccgacggtgacgatgctcggggtggt 147 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct: 61 gatgtcggggcagacgcagcgcctgaacgtggtgccgacggtgacgatgctcggggtcat 120 Query: 148 gaaggcgggcctggtcggcgccacgcgggggcacgcgctgctcaagaagaagtcggacgc 207 |||||| | || ||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 121 gaaggcccggctcgtcggcgccacccgcggccacgcgctcctcaagaagaagtcggacgc 180 Query: 208 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccaccaaggagtccatggg 267 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 181 gctcaccgtgcagttccgcgccatcctcaagaagatcgtcgccgccaaggagtccatggg 240 Query: 268 cgaggccatgcgcgcctcctccttctcgctcgccgaggccaagtacgtggccggcgacgg 327 ||||||||| | || ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 241 ggaggccatgagggcgtcctccttctccctcgccgaggccaagtacgtcgccggcgacgg 300 Query: 328 cgtgcgccacgtcgtgctccagtccgtccgctccgc 363 ||| |||||||| || |||||||||||||||||||| Sbjct: 301 cgtccgccacgttgtcctccagtccgtccgctccgc 336
>gb|AY104098.1| Zea mays PCO119647 mRNA sequence Length = 1235 Score = 274 bits (138), Expect = 2e-70 Identities = 219/246 (89%) Strand = Plus / Plus Query: 113 aacgtggtgccgacggtgacgatgctcggggtggtgaaggcgggcctggtcggcgccacg 172 ||||| ||||||||||||||||||||||| || ||||||| | || |||||||| || Sbjct: 120 aacgtcgtgccgacggtgacgatgctcggcgtcatgaaggctcggctcgtcggcgcgacc 179 Query: 173 cgggggcacgcgctgctcaagaagaagtcggacgcgctcaccgtgcagttccgcgccatc 232 || || ||||||||||| ||||||||||| |||||||| || || ||||||||||||||| Sbjct: 180 cgcggccacgcgctgctgaagaagaagtccgacgcgctgacggtccagttccgcgccatc 239 Query: 233 ctcaagaagatcgtcgccaccaaggagtccatgggcgaggccatgcgcgcctcctccttc 292 |||||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||| Sbjct: 240 ctcaagaagatcgtcgccgccaaggagtcgatgggcgagacgatgcgcgcctcctccttc 299 Query: 293 tcgctcgccgaggccaagtacgtggccggcgacggcgtgcgccacgtcgtgctccagtcc 352 || |||||||||||||||||||| || ||||||||||| ||||||||| | ||||||||| Sbjct: 300 tccctcgccgaggccaagtacgtcgctggcgacggcgtccgccacgtcatcctccagtcc 359 Query: 353 gtccgc 358 |||||| Sbjct: 360 gtccgc 365
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Minus Query: 135 tgctcggggtggtgaaggcgggc 157 ||||||||||||||||||||||| Sbjct: 2886570 tgctcggggtggtgaaggcgggc 2886548
>ref|NM_192555.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 936 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 299 gccgaggccaagtacgtggccggcgacggcgtg 331 ||||||||||||||| | ||||||| ||||||| Sbjct: 652 gccgaggccaagtacctcgccggcgtcggcgtg 684
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 299 gccgaggccaagtacgtggccggcgacggcgtg 331 ||||||||||||||| | ||||||| ||||||| Sbjct: 22911133 gccgaggccaagtacctcgccggcgtcggcgtg 22911101
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 299 gccgaggccaagtacgtggccggcgacggcgtg 331 ||||||||||||||| | ||||||| ||||||| Sbjct: 114690 gccgaggccaagtacctcgccggcgtcggcgtg 114658
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 aaggcgggcctggtcggcgcc 169 ||||||||||||||||||||| Sbjct: 7311837 aaggcgggcctggtcggcgcc 7311857 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ccatcctcaagaagatcgtc 247 |||||||||||||||||||| Sbjct: 6634093 ccatcctcaagaagatcgtc 6634112
>dbj|AK107346.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-G10, full insert sequence Length = 1175 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 299 gccgaggccaagtacgtggccggcgacggcgtg 331 ||||||||||||||| | ||||||| ||||||| Sbjct: 755 gccgaggccaagtacctcgccggcgtcggcgtg 787
>ref|XM_752079.1| Ustilago maydis 521 hypothetical protein (UM01025.1) partial mRNA Length = 1845 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 267 gcgaggccatgcgcgcctcctccttctc 294 ||||||||||||||||| ||| |||||| Sbjct: 331 gcgaggccatgcgcgccgccttcttctc 304
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 317 gccggcgacggcgtgcgccacgtcgtgc 344 |||| |||||||||||||| |||||||| Sbjct: 1473124 gccgccgacggcgtgcgccgcgtcgtgc 1473097
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cgccatcctcaagaagatcg 245 |||||||||||||||||||| Sbjct: 3412949 cgccatcctcaagaagatcg 3412930
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 229 catcctcaagaagatcgtcgccaccaag 256 ||||||||| |||||| ||||||||||| Sbjct: 3724371 catcctcaacaagatcatcgccaccaag 3724344
>emb|AJ586111.1| Natrinema sp. XA3-1 16S rRNA gene, 23S rRNA gene (partial), IGS and ITS1, strain XA3-1 Length = 5887 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gacggcgtgcgccacgtcgt 342 |||||||||||||||||||| Sbjct: 513 gacggcgtgcgccacgtcgt 494
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 gccggcgacggcgtgcgccacgtc 340 |||||||||||| ||||||||||| Sbjct: 4213687 gccggcgacggcctgcgccacgtc 4213710
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 caagaagatcgtcgccacca 254 |||||||||||||||||||| Sbjct: 4781245 caagaagatcgtcgccacca 4781226
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cgccatcctcaagaagatcg 245 |||||||||||||||||||| Sbjct: 3175222 cgccatcctcaagaagatcg 3175203 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 acgtggtgccgacggtgacgatgc 137 ||||||||||||||| |||||||| Sbjct: 2918585 acgtggtgccgacggcgacgatgc 2918562
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 acgtggccggcgacggcgtg 331 |||||||||||||||||||| Sbjct: 76870 acgtggccggcgacggcgtg 76889 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,942,922 Number of Sequences: 3902068 Number of extensions: 1942922 Number of successful extensions: 38657 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37717 Number of HSP's gapped (non-prelim): 940 length of query: 363 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 341 effective length of database: 17,147,199,772 effective search space: 5847195122252 effective search space used: 5847195122252 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
