>PDXA_XANAC (Q8PP24) 4-hydroxythreonine-4-phosphate dehydrogenase (EC|
           1.1.1.262) (4-(phosphohydroxy)-L-threonine
           dehydrogenase)
          Length = 323

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 183 VRLAQ---ADVHLVAVRRIRAAHPDLQHXXXXXXXXXXXXDRLLQPPHPRRAPTPLVPPV 353
           VRLAQ   +D HL+A      A PD  H             RLL+P  P RAP  L    
Sbjct: 22  VRLAQQPRSDAHLIAY-----ADPDTLHSAATALSLPV---RLLEPDQPARAPGDLPLHP 73

Query: 354 ITRSLAS 374
           I +++A+
Sbjct: 74  IRQAVAT 80

>MASS1_MOUSE (Q8VHN7) Monogenic audiogenic seizure susceptibility protein 1|
            precursor (Very large G-protein coupled receptor 1)
            (Neurepin)
          Length = 6298

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 196  KPTSISWPSVVYAPLTPTFSIRAVPPHPALRHAI 297
            K T+I + + V+AP+T T ++ A+P   A  H++
Sbjct: 5159 KITTIPYTTEVFAPVTETVTVSAIPEKLATAHSV 5192

>JPH3_HUMAN (Q8WXH2) Junctophilin-3 (Junctophilin type 3) (JP-3)|
          Length = 748

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 244 PTFSIRAVPPHPALRHAIAYYSRLIRAERQR 336
           PT      PP PA R+ +A++SR +  + +R
Sbjct: 481 PTSPAATPPPAPAARNKVAHFSRQVSVDEER 511

>TRUA_SYNP6 (O24712) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 294

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 214 WPSVVYAPLTPTFSIRAVPPHPALRHA 294
           WPSV+   LTP  +IRA    PA  HA
Sbjct: 87  WPSVLNGRLTPDLNIRAAAIVPANWHA 113

>UPP_SYNP6 (Q5MZF4) Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP|
           pyrophosphorylase) (UPRTase)
          Length = 217

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/57 (31%), Positives = 22/57 (38%)
 Frame = +1

Query: 178 KVFVWPKPTSISWPSVVYAPLTPTFSIRAVPPHPALRHAIAYYSRLIRAERQRRWCP 348
           ++FV P P    W  +     TPT         P  R AIA   R +  E  R W P
Sbjct: 6   RIFVPPHPLIRHWLGIARDRQTPT---------PLFRTAIAELGRWLAYEAVREWLP 53

>CCNK_MOUSE (O88874) Cyclin-K|
          Length = 554

 Score = 23.9 bits (50), Expect(2) = 6.9
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 199 PTSISWPSVVYAPLTPTFSIRAVPPHPAL--RHAI 297
           P +I  P+  Y P  PT++    PP P L   HA+
Sbjct: 470 PPTIPPPTPGYPPPPPTYNPNFPPPPPRLPPTHAV 504



 Score = 22.3 bits (46), Expect(2) = 6.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 306 QPPHPRRAPTPLVPPV 353
           QPP P   P P +PPV
Sbjct: 529 QPPVPPPIPPPGMPPV 544

>DDI1_YEAST (P40087) DNA damage-inducible protein DDI1 (v-SNARE-master 1)|
          Length = 428

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 193 PKPTSISWPSVVYAPLTPTFSIRAVPPHPALRHAIA 300
           P PTS++  S    PLTPT +   +PP P    A+A
Sbjct: 332 PAPTSVTTSSD--KPLTPTKTSSTLPPQPGAVPALA 365

>SPI1_HUMAN (P17947) Transcription factor PU.1 (31 kDa transforming protein)|
          Length = 270

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 265 VPPHPALRHAIAYYSRL 315
           VPPHP+L H ++Y  R+
Sbjct: 101 VPPHPSLGHQVSYLPRM 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,801,515
Number of Sequences: 219361
Number of extensions: 483091
Number of successful extensions: 1982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1977
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)