ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast44g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SMCA2_HUMAN (P51531) Probable global transcription activator SNF... 32 0.29
2SMCA4_HUMAN (P51532) Probable global transcription activator SNF... 29 2.4

>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha)
           (SWI/SNF-related matrix associated actin dependent
           regulator of chromatin subfamily A member 2) (hBRM)
          Length = 1586

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 236 PAPFTAAQYEELEQQALIYKYLVAGVPVPQ 325
           P+PF+  Q  +L  Q L YK L  G P+P+
Sbjct: 171 PSPFSPVQLHQLRAQILAYKMLARGQPLPE 200



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>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta)
           (BRG-1 protein) (Mitotic growth and transcription
           activator) (Brahma protein homolog 1) (SWI/SNF-related
           matrix-associated actin
          Length = 1647

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 236 PAPFTAAQYEELEQQALIYKYLVAGVPVP 322
           P PF   Q  +L  Q + YK L  G P+P
Sbjct: 169 PTPFNQNQLHQLRAQIMAYKMLARGQPLP 197


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,130,097
Number of Sequences: 219361
Number of extensions: 277311
Number of successful extensions: 882
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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