| Clone Name | bast44f08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108649.1| Zea mays PCO103051 mRNA sequence Length = 919 Score = 73.8 bits (37), Expect = 4e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 299 gcgtggcggagcgggagcgctctcgccggcgtcggcgcgacccagggcgcgatgagttct 358 |||||||||||||||||||| | | ||||| || |||||||| || ||||| ||||||| Sbjct: 203 gcgtggcggagcgggagcgcgcgaggcggcggcgtcgcgacccgggccgcgacgagttct 262 Query: 359 tcgtgccgacgccggagtcacttaaatggctcgactccgtcaccctgcccatg 411 ||||||| ||||| ||||| || ||||||||||| ||| |||| |||||| Sbjct: 263 tcgtgcccacgccagagtcgctggcgtggctcgactcggtctccctccccatg 315 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 208 gcgatgctgcggacagcgctgcgccggggaggggcggccatgaggcagg 256 |||||||||||| | |||||||| |||||||||||| || |||||||| Sbjct: 109 gcgatgctgcggtcggcgctgcggcggggaggggcgtccgcgaggcagg 157
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 208 gcgatgctgcggacagcgctgcgccggggaggggcggccatgaggcaggccg 259 |||||| ||||| | |||||||||||||||||||||||| ||||||| |||| Sbjct: 18278344 gcgatgttgcggtcggcgctgcgccggggaggggcggccgtgaggcacgccg 18278293 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 346 cgcgatgagttcttcgtgccgacgccggagtc 377 ||||| |||||||||||| ||||||||||||| Sbjct: 18278182 cgcgacgagttcttcgtggcgacgccggagtc 18278151
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 208 gcgatgctgcggacagcgctgcgccggggaggggcggccatgaggcaggccg 259 |||||| ||||| | |||||||||||||||||||||||| ||||||| |||| Sbjct: 127068 gcgatgttgcggtcggcgctgcgccggggaggggcggccgtgaggcacgccg 127017 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 346 cgcgatgagttcttcgtgccgacgccggagtc 377 ||||| |||||||||||| ||||||||||||| Sbjct: 126906 cgcgacgagttcttcgtggcgacgccggagtc 126875
>dbj|AK107794.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D08, full insert sequence Length = 743 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 208 gcgatgctgcggacagcgctgcgccggggaggggcggccatgaggcaggccg 259 |||||| ||||| | |||||||||||||||||||||||| ||||||| |||| Sbjct: 60 gcgatgttgcggtcggcgctgcgccggggaggggcggccgtgaggcacgccg 111 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 346 cgcgatgagttcttcgtgccgacgccggagtc 377 ||||| |||||||||||| ||||||||||||| Sbjct: 222 cgcgacgagttcttcgtggcgacgccggagtc 253
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 248 tgaggcaggccgtgctggacga 269 |||||||||||||||||||||| Sbjct: 2734786 tgaggcaggccgtgctggacga 2734765
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 328 cgtcggcgcgacccagggcgcg 349 |||||||||||||||||||||| Sbjct: 3125082 cgtcggcgcgacccagggcgcg 3125061
>gb|AE005958.1| Caulobacter crescentus CB15 section 284 of 359 of the complete genome Length = 13027 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 328 cgtcggcgcgacccagggcgcg 349 |||||||||||||||||||||| Sbjct: 3611 cgtcggcgcgacccagggcgcg 3590
>gb|AY842444.1| Homo sapiens fatty acid amide hydrolase (FAAH) gene, complete cds Length = 22876 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 15857 cggccatgaggcgggccgtgctgga 15881
>ref|NM_001441.1| Homo sapiens fatty acid amide hydrolase (FAAH), mRNA Length = 2063 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 1054 cggccatgaggcgggccgtgctgga 1078
>emb|AL122001.32|HSJ603I14 Human DNA sequence from clone RP4-603I14 on chromosome 1p31.3-33 Contains the 5' end of the gene for MUF1 protein (MUF1), the UQCRH gene for ubiquinol-cytochrome c reductase hinge protein, gene MGC22960 (FLJ40205, FLJ32858, FLJ46186), the FAAH gene for fatty acid amide hydrolase and a CpG island, complete sequence Length = 126613 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 15423 cggccatgaggcgggccgtgctgga 15399
>emb|AL050372.1|HSM800546 Homo sapiens mRNA; cDNA DKFZp434A091 (from clone DKFZp434A091); partial cds Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 140 cggccatgaggcgggccgtgctgga 164
>emb|CR612908.1| full-length cDNA clone CS0DF036YM22 of Fetal brain of Homo sapiens (human) Length = 1989 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 1050 cggccatgaggcgggccgtgctgga 1074
>emb|CR611548.1| full-length cDNA clone CS0CAP001YO22 of Thymus of Homo sapiens (human) Length = 1286 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 324 cggccatgaggcgggccgtgctgga 348
>gb|AF445428.1| Mycobacterium avium subsp. paratuberculosis clone uni9 genomic sequence Length = 552 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 299 gcgtggcggagcgggagcgctctcgccgg 327 |||||||||| ||||||||||| |||||| Sbjct: 140 gcgtggcggaccgggagcgctcccgccgg 168
>gb|AF232829.2| Mycobacterium avium putative PKNH (pknH) gene, partial cds; putative CYTP450 (cytP450), complete cds; and IS999 transposase subunit A, transposase subunit B, putative transposase subunit A, and putative transposase subunit B genes, complete cds Length = 9177 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 299 gcgtggcggagcgggagcgctctcgccgg 327 |||||||||| ||||||||||| |||||| Sbjct: 1864 gcgtggcggatcgggagcgctcccgccgg 1892
>gb|BC093632.1| Homo sapiens fatty acid amide hydrolase, mRNA (cDNA clone MGC:120667 IMAGE:7939477), complete cds Length = 1811 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 1043 cggccatgaggcgggccgtgctgga 1067
>gb|AE004730.1| Pseudomonas aeruginosa PAO1, section 291 of 529 of the complete genome Length = 20021 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 cggcgcgacccagggcgcgat 351 ||||||||||||||||||||| Sbjct: 9113 cggcgcgacccagggcgcgat 9133
>gb|BC111941.1| Homo sapiens fatty acid amide hydrolase, mRNA (cDNA clone MGC:138146 IMAGE:8327409), complete cds Length = 1811 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 1043 cggccatgaggcgggccgtgctgga 1067
>emb|BX649256.12| Zebrafish DNA sequence from clone DKEYP-92A5 in linkage group 22, complete sequence Length = 128446 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tctctcttctccctcctgaag 30 ||||||||||||||||||||| Sbjct: 115378 tctctcttctccctcctgaag 115398
>emb|AL772158.6| Zebrafish DNA sequence from clone CH211-128N21 in linkage group 22, complete sequence Length = 178046 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 tctctcttctccctcctgaag 30 ||||||||||||||||||||| Sbjct: 72700 tctctcttctccctcctgaag 72680
>gb|AF098013.1|HSFAAH04 Homo sapiens fatty acid amide hydrolase (FAAH) gene, exon 8 Length = 602 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 235 cggccatgaggcgggccgtgctgga 259
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 299 gcgtggcggagcgggagcgctctcgccgg 327 |||||||||| ||||||||||| |||||| Sbjct: 2236071 gcgtggcggaccgggagcgctcccgccgg 2236043
>gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.642_C_21, complete sequence Length = 172084 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 ttcgtctctcttctccctcct 26 ||||||||||||||||||||| Sbjct: 123889 ttcgtctctcttctccctcct 123909
>gb|BC034478.1| Homo sapiens cDNA clone IMAGE:4826842, containing frame-shift errors Length = 2053 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 1047 cggccatgaggcgggccgtgctgga 1071
>gb|U82535.1|HSU82535 Human fatty acid amide hydrolase mRNA, complete cds Length = 2063 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cggccatgaggcaggccgtgctgga 266 |||||||||||| |||||||||||| Sbjct: 1054 cggccatgaggcgggccgtgctgga 1078
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 acgaccgccgccgcagccgagggga 67 ||||||||||||||||||| ||||| Sbjct: 2108933 acgaccgccgccgcagccgcgggga 2108957
>ref|XM_847172.1| PREDICTED: Canis familiaris hypothetical protein LOC609829 (LOC609829), mRNA Length = 4677 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gccggcggcgtggacgcagc 209 |||||||||||||||||||| Sbjct: 1096 gccggcggcgtggacgcagc 1077
>ref|XM_962171.1| PREDICTED: Tribolium castaneum similar to Sodium/potassium/calcium exchanger (Na(+)/K(+)/Ca(2+)-exchange protein) (LOC655611), mRNA Length = 1737 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 gcgatgagttcttcgtgccg 366 |||||||||||||||||||| Sbjct: 242 gcgatgagttcttcgtgccg 261
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 187 atcgccggcggcgtggacgcagcgatgc 214 ||||||||||||||| ||||||||||| Sbjct: 318682 atcgccggcggcgtgttcgcagcgatgc 318709
>emb|BX323577.16| Zebrafish DNA sequence from clone CH211-277N6 in linkage group 24, complete sequence Length = 55628 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tctctcttctccctcctgaa 29 |||||||||||||||||||| Sbjct: 11405 tctctcttctccctcctgaa 11424
>gb|AC035138.9| Homo sapiens chromosome 10 clone RP11-314D6, complete sequence Length = 184328 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ctctcttctccctcctgaag 30 |||||||||||||||||||| Sbjct: 156630 ctctcttctccctcctgaag 156649
>dbj|AK077594.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730462H23 product:fox-1 homolog (C. elegans), full insert sequence Length = 3559 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gagcgagcgagcggacggcg 128 |||||||||||||||||||| Sbjct: 130 gagcgagcgagcggacggcg 149
>gb|AC064852.4| Homo sapiens BAC clone RP11-174L18 from 2, complete sequence Length = 152781 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 gcgtggcggagcgggagcgc 318 |||||||||||||||||||| Sbjct: 44804 gcgtggcggagcgggagcgc 44823
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 agcgctgcgccggggagggg 241 |||||||||||||||||||| Sbjct: 2600293 agcgctgcgccggggagggg 2600274
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gttccctcgccctgttgtcc 179 |||||||||||||||||||| Sbjct: 5417202 gttccctcgccctgttgtcc 5417183
>emb|BX005395.9| Zebrafish DNA sequence from clone DKEY-8L13 in linkage group 18, complete sequence Length = 171015 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 atcaggagagcagcgcagcatgcg 91 ||||||||||||| |||||||||| Sbjct: 11799 atcaggagagcagggcagcatgcg 11822
>ref|NM_053104.3| Mus musculus RNA binding motif protein 9 (Rbm9), transcript variant 1, mRNA Length = 3559 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gagcgagcgagcggacggcg 128 |||||||||||||||||||| Sbjct: 130 gagcgagcgagcggacggcg 149
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gcgctctcgccggcgtcggc 334 |||||||||||||||||||| Sbjct: 828393 gcgctctcgccggcgtcggc 828374 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,418,411 Number of Sequences: 3902068 Number of extensions: 2418411 Number of successful extensions: 60988 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60304 Number of HSP's gapped (non-prelim): 683 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)