>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
Length = 1840
Score = 33.1 bits (74), Expect = 0.16
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = -1
Query: 262 PGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPL 83
P SPG ++ PT+ G+ +P SP S ++S S PTS AY P
Sbjct: 1539 PSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY-SPT 1597
Query: 82 ARGCSPWRP 56
+ SP P
Sbjct: 1598 SPSYSPTSP 1606
Score = 32.0 bits (71), Expect = 0.36
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS AY P + G SP P
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY-SPTSPGYSPTSP 1711
Score = 31.2 bits (69), Expect = 0.61
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = -1
Query: 316 TSSESTVSCSGKAPEGAIPGPS-PGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 140
TS + + G +P PS PG + S PT+ + +P SP S S
Sbjct: 1562 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1621
Query: 139 FSRSYGSVLPTSLAYIVPLARGCSPWRP 56
+S + S PTS +Y P + SP P
Sbjct: 1622 YSPTSPSYSPTSPSY-SPTSPAYSPTSP 1648
Score = 30.4 bits (67), Expect = 1.0
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -1
Query: 316 TSSESTVSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 140
TS + S G +P P SP + S PT+ + +P SP S S
Sbjct: 1576 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1635
Query: 139 FSRSYGSVLPTSLAYIVPLARGCSPWRP 56
+S + + PTS AY P + SP P
Sbjct: 1636 YSPTSPAYSPTSPAY-SPTSPAYSPTSP 1662
Score = 29.3 bits (64), Expect = 2.3
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = -1
Query: 328 PLVRTSSESTVSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSP 152
P V + S S G +P P SPG + PT+ + +P SP
Sbjct: 1530 PYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1589
Query: 151 QSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
S ++S + S PTS +Y P + SP P
Sbjct: 1590 TSPAYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1620
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1659 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSP 1704
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1652 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1697
Score = 28.1 bits (61), Expect = 5.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1645 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1690
Score = 27.7 bits (60), Expect = 6.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSP-WRPDAVMSTT 35
PT+ + +P SP S S+S S + P+S P + G SP + P A S T
Sbjct: 1755 PTSPNYSPTSPSYSPTSPSYSPSSPTYSPSS-----PYSSGASPDYSPSAGYSPT 1804
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RNA polymerase II subunit 1) (B220)
Length = 1733
Score = 32.0 bits (71), Expect = 0.36
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ GFG +P SP S ++S + + PTS +Y P + SP P
Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSY-SPTSPSYSPTSP 1575
Score = 30.8 bits (68), Expect = 0.80
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -1
Query: 316 TSSESTVSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 140
TS VS G +P P SP + S PT+ + +P SP S S
Sbjct: 1531 TSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1590
Query: 139 FSRSYGSVLPTSLAYIVPLARGCSPWRP 56
+S + S PTS +Y P + SP P
Sbjct: 1591 YSPTSPSYSPTSPSY-SPTSPSYSPTSP 1617
Score = 30.4 bits (67), Expect = 1.0
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = -1
Query: 286 GKAPEGAIPG---PSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSV 116
G+AP PG SPG + + PT+ + +P SP S S+S + S
Sbjct: 1527 GEAPTS--PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584
Query: 115 LPTSLAYIVPLARGCSPWRP 56
PTS +Y P + SP P
Sbjct: 1585 SPTSPSY-SPTSPSYSPTSP 1603
Score = 29.6 bits (65), Expect = 1.8
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS AY P + SP P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY-SPTSPSYSPTSP 1673
Score = 28.9 bits (63), Expect = 3.0
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRPDAVMSTTG 32
PT+ + +P SP S S+S + S PTS +Y P + SP P ++ G
Sbjct: 1656 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPNYSPTSPSYSPTSPG 1709
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRPD 53
PT+ + +P SP S S+S + S PTS +Y P + SP P+
Sbjct: 1649 PTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPN 1695
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSP 1666
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1614 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1659
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1607 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1652
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1600 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1645
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1593 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1638
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1586 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1631
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1579 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1624
Score = 27.3 bits (59), Expect = 8.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S ++S + S PTS +Y P + SP P
Sbjct: 1642 PTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1687
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
2.7.7.6) (RPB1) (Fragment)
Length = 467
Score = 30.4 bits (67), Expect = 1.0
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = -1
Query: 295 SCSGKAPEGAIPGPSPGRHAATXXXXXXXXSN-PPTADGFGAGTPEPSPQSQSFSRSYGS 119
S G P+ P+ ++ T N PT+ + +P SP S S+S + S
Sbjct: 101 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 160
Query: 118 VLPTSLAYIVPLARGCSPWRP 56
PTS +Y P + SP P
Sbjct: 161 YSPTSPSY-SPTSPSYSPTSP 180
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRPD 53
PT+ + +P SP S S+S + S PTS +Y P + SP P+
Sbjct: 205 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPNYSPTSPN 251
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRPD 53
PT+ + +P SP S S+S + S PTS +Y P + SP P+
Sbjct: 198 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPN 244
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 191 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 236
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 184 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 229
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 177 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 222
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 170 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 215
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 163 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 208
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 156 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 201
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 149 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 194
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 142 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 187
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RNA polymerase II subunit 1)
Length = 1752
Score = 30.4 bits (67), Expect = 1.0
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + A +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1601 PTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1646
Score = 29.6 bits (65), Expect = 1.8
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = -1
Query: 253 SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARG 74
SP A + S PT+ + +P SP S S+S + S PTS +Y P +
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPS 1661
Query: 73 CSPWRP 56
SP P
Sbjct: 1662 YSPTSP 1667
Score = 29.3 bits (64), Expect = 2.3
Identities = 25/85 (29%), Positives = 34/85 (40%)
Frame = -1
Query: 310 SESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSR 131
S S S S A + SP + S PT+ + +P SP S S+S
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657
Query: 130 SYGSVLPTSLAYIVPLARGCSPWRP 56
+ S PTS +Y P + SP P
Sbjct: 1658 TSPSYSPTSPSY-SPTSPSYSPTSP 1681
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1587 PTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSY-SPTSPSYSPTSP 1632
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1706 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1751
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1699 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1744
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1737
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1685 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1730
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1678 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1723
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1716
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1709
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1702
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1650 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1695
Score = 27.3 bits (59), Expect = 8.9
Identities = 24/87 (27%), Positives = 34/87 (39%)
Frame = -1
Query: 316 TSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSF 137
TS + S G + A SP + S PT+ + +P S S S+
Sbjct: 1554 TSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSY 1613
Query: 136 SRSYGSVLPTSLAYIVPLARGCSPWRP 56
S + S PTS +Y P + SP P
Sbjct: 1614 SPTSPSYSPTSPSY-SPTSPSYSPTSP 1639
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RPB1)
Length = 1970
Score = 30.4 bits (67), Expect = 1.0
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = -1
Query: 295 SCSGKAPEGAIPGPSPGRHAATXXXXXXXXSN-PPTADGFGAGTPEPSPQSQSFSRSYGS 119
S G P+ P+ ++ T N PT+ + +P SP S S+S + S
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663
Query: 118 VLPTSLAYIVPLARGCSPWRP 56
PTS +Y P + SP P
Sbjct: 1664 YSPTSPSY-SPTSPSYSPTSP 1683
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRPD 53
PT+ + +P SP S S+S + S PTS +Y P + SP P+
Sbjct: 1708 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPNYSPTSPN 1754
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRPD 53
PT+ + +P SP S S+S + S PTS +Y P + SP P+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPN 1747
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1694 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1739
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1687 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1732
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1680 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1725
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1718
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1711
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1659 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1704
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1652 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1697
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1645 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1690
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RPB1)
Length = 1970
Score = 30.4 bits (67), Expect = 1.0
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = -1
Query: 295 SCSGKAPEGAIPGPSPGRHAATXXXXXXXXSN-PPTADGFGAGTPEPSPQSQSFSRSYGS 119
S G P+ P+ ++ T N PT+ + +P SP S S+S + S
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663
Query: 118 VLPTSLAYIVPLARGCSPWRP 56
PTS +Y P + SP P
Sbjct: 1664 YSPTSPSY-SPTSPSYSPTSP 1683
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRPD 53
PT+ + +P SP S S+S + S PTS +Y P + SP P+
Sbjct: 1708 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPNYSPTSPN 1754
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRPD 53
PT+ + +P SP S S+S + S PTS +Y P + SP P+
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPN 1747
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1694 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1739
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1687 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1732
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1680 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1725
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1718
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1711
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1659 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1704
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1652 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1697
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1645 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1690
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
Length = 1852
Score = 30.0 bits (66), Expect = 1.4
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = -1
Query: 289 SGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSVLP 110
S +P + P+ G+ + S PT+ + +P SP S S+S + S P
Sbjct: 1590 SPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649
Query: 109 TSLAYIVPLARGCSPWRP 56
TS +Y P + SP P
Sbjct: 1650 TSPSY-SPSSPSYSPSSP 1666
Score = 28.5 bits (62), Expect = 4.0
Identities = 25/91 (27%), Positives = 35/91 (38%)
Frame = -1
Query: 328 PLVRTSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQ 149
P + +S VS S + SP + S PT+ + +P SP
Sbjct: 1598 PTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1657
Query: 148 SQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
S S+S S S P+S Y P + SP P
Sbjct: 1658 SPSYSPSSPSYSPSSPRY-SPTSPTYSPTSP 1687
Score = 27.3 bits (59), Expect = 8.9
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = -1
Query: 310 SESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSR 131
S ++ S S +P SP + S PT+ + +P SP S S+S
Sbjct: 1590 SPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649
Query: 130 SYGSVLPTSLAYIVPLARGCSPWRP 56
+ S P+S +Y P + SP P
Sbjct: 1650 TSPSYSPSSPSY-SPSSPSYSPSSP 1673
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RNA polymerase II subunit 1)
Length = 1745
Score = 30.0 bits (66), Expect = 1.4
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = -1
Query: 298 VSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYG 122
VS G +P P SP + S PT+ + +P SP S S+S +
Sbjct: 1540 VSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1599
Query: 121 SVLPTSLAYIVPLARGCSPWRP 56
S PTS +Y P + SP P
Sbjct: 1600 SYSPTSPSY-SPTSPSYSPTSP 1620
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1718
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1711
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1659 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1704
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1652 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1697
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1645 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1690
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1638 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1683
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1631 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1676
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1624 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1669
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1617 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1662
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1610 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1655
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1603 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1648
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1596 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1641
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1589 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1634
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1582 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1627
Score = 27.3 bits (59), Expect = 8.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1680 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPQYSPRSP 1725
>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RNA polymerase II subunit 1)
Length = 1599
Score = 28.9 bits (63), Expect = 3.0
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRPDAVMS 41
PT+ + +P SP S S+S + S PTS +Y P + SP P +S
Sbjct: 1524 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSVS 1574
Score = 28.5 bits (62), Expect = 4.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLA 80
PT+ + +P SP S S+S + S PTS +Y V ++
Sbjct: 1538 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSVSMS 1576
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1517 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1562
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1510 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1555
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1503 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1548
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1496 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1541
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1489 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1534
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1482 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1527
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1475 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1520
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 1468 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1513
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC|
2.7.7.6) (Fragment)
Length = 902
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 814 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 859
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 807 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 852
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 800 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 845
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 793 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 838
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 786 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 831
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 779 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 824
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 730 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 775
Score = 28.1 bits (61), Expect = 5.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 821 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPSSP 866
Score = 27.7 bits (60), Expect = 6.8
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S + S PTS +Y P + SP P
Sbjct: 828 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPSSPSYSPSSP 873
Score = 27.7 bits (60), Expect = 6.8
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Frame = -1
Query: 328 PLVRTSSESTVSCSGKAPEGAIPGPS-----PGRHAATXXXXXXXXSNPPTADGFGAGTP 164
P T S ++ S S +P + PS P + S PT+ + +P
Sbjct: 723 PQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSP 782
Query: 163 EPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
SP S S+S + S PTS +Y P + SP P
Sbjct: 783 SYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 817
Score = 27.3 bits (59), Expect = 8.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 196 PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
PT+ + +P SP S S+S S S P+S +Y P + SP P
Sbjct: 842 PTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSY-SPSSPSYSPSSP 887
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
Length = 1853
Score = 27.7 bits (60), Expect = 6.8
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Frame = -1
Query: 328 PLVRTSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQ 149
P T S ++ S G +P PS ++ T PT+ + +P+ SP
Sbjct: 1702 PTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYS------PTSPQYSPTSPQYSPS 1755
Query: 148 SQSFSRSYGSVLPTS-LAYIVPLARGCSP-WRPDAVMSTTGRERYS 17
S +++ S + PTS A+ P SP + P + T +YS
Sbjct: 1756 SPTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYS 1801
Score = 27.7 bits (60), Expect = 6.8
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -1
Query: 328 PLVRTSSESTVSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSP 152
P + S ++ + G++P P SP + S PT+ + +P SP
Sbjct: 1594 PTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1653
Query: 151 QSQSFSRSYGSVLPTSLAYIVPLARGCSPWRP 56
S S+S + S PTS +Y P + SP P
Sbjct: 1654 TSPSYSPTSPSYSPTSPSY-SPSSPRYSPTSP 1684
>PYRB2_PEA (Q43087) Aspartate carbamoyltransferase 2, chloroplast precursor|
(EC 2.1.3.2) (Aspartate transcarbamylase 2) (ATCase 2)
Length = 385
Score = 27.3 bits (59), Expect = 8.9
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 198 GXXXXXXXXXXVAACRPGDGPGIAPSGAFPEHETVDSELVRTRGIRL 338
G + GDGPG PS A + T++ E+ + GI++
Sbjct: 187 GAARRAATIAGIPIVNAGDGPGQHPSQALLDVYTIEREIGKLDGIKV 233
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,061,614
Number of Sequences: 219361
Number of extensions: 1506659
Number of successful extensions: 5635
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 4890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5547
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)