ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast44e07 |
|---|---|
| Clone Library Name | barley_pub |
>BSPB_POPDE (Q09117) Bark storage protein B precursor| Length = 312 Score = 41.6 bits (96), Expect = 5e-04 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = +1 Query: 199 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 378 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSHSVNMAT 88 Query: 379 TTQMLLS 399 T Q+LL+ Sbjct: 89 TLQILLA 95
>BSPA_POPDE (Q07469) Bark storage protein A precursor| Length = 312 Score = 41.2 bits (95), Expect = 6e-04 Identities = 23/66 (34%), Positives = 34/66 (51%) Frame = +1 Query: 199 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 378 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSPSVNMAT 88 Query: 379 TTQMLL 396 T Q+LL Sbjct: 89 TLQILL 94
>Y2293_MYCTU (Q50673) Hypothetical protein Rv2293c/MT2350 precursor| Length = 246 Score = 33.5 bits (75), Expect = 0.12 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = +1 Query: 298 RRFRFGTIEGQSVVMVMTGLSMLNAGLTTQ 387 RR+ G+I G+ V++ MTG+ ++NA TT+ Sbjct: 69 RRYYLGSISGKKVIVAMTGIGLVNATNTTE 98
>ASSY_STRMU (Q8CWZ0) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 396 Score = 33.1 bits (74), Expect = 0.16 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Frame = -3 Query: 396 QQHLGGQTSVEHAQSCHDHDDA-------LAFDGSKAKPSPLDVHVRDALAG-HEAGRLE 241 ++ G SVE A ++ D +A DG + K + L + + LAG H GR++ Sbjct: 197 EEAFGITNSVEEAPDKAEYVDITFKEGKPVALDGQEMKLADL-IQKLNVLAGKHGVGRID 255 Query: 240 H-RNHLVGVGHDEADERPGAV 181 H N LVG+ E E PGAV Sbjct: 256 HVENRLVGIKSREIYECPGAV 276
>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining| factor) Length = 311 Score = 33.1 bits (74), Expect = 0.16 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 264 QQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWSDHP 386 QQ+ H H + + L NH +++ HD + Q++ DHP Sbjct: 200 QQQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQQFHDHP 240
>ASSY_BACLD (Q65G67) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.6 bits (70), Expect = 0.47 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -3 Query: 330 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 181 ++ DG+ S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGTHYPLSDLILKLNELAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>CDC54_YEAST (P30665) Cell division control protein 54| Length = 933 Score = 31.6 bits (70), Expect = 0.47 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +1 Query: 208 VVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQ 387 VVPN + P L SP+ S S DI GR +G+ + G S LN ++Q Sbjct: 19 VVPNPDSVPPQLSSPALFYSSSSSQGDIYGRNNSQNLSQGEGNIRAAIGSSPLNFPSSSQ 78
>ASSY_BACSU (O34347) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.2 bits (69), Expect = 0.62 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 330 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 181 ++ DG S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGVSYSLSELILKLNEMAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>HUTI_PSESM (Q87UL9) Imidazolonepropionase (EC 3.5.2.7)| (Imidazolone-5-propionate hydrolase) Length = 401 Score = 30.8 bits (68), Expect = 0.80 Identities = 17/67 (25%), Positives = 27/67 (40%) Frame = -3 Query: 345 DHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADG 166 +HD+ + G+ P +D H G+ +G E R L GV + E G + Sbjct: 46 EHDNCIDLGGAWVTPGLIDCHTHTVFGGNRSGEFEQR--LQGVSYAEIAAAGGGIASTVR 103 Query: 165 CPRLLSD 145 R S+ Sbjct: 104 ATRAASE 110
>ASSY_GEOKA (Q5KW94) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -3 Query: 312 KAKPSPLDVHVRDALAG-HEAGRLEH-RNHLVGVGHDEADERPGAV 181 KA P + +ALAG H GR++H N LVG+ E E PGA+ Sbjct: 232 KAYPLAQLILELNALAGKHGVGRIDHVENRLVGIKSREVYECPGAI 277
>ASSY_STRT2 (Q5M2K2) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 330 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 181 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>ASSY_STRT1 (Q5LXZ8) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 330 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 181 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>NORR2_RALEU (Q9K4U8) Nitric oxide reductase transcription regulator norR2| Length = 521 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/58 (34%), Positives = 23/58 (39%) Frame = -3 Query: 315 SKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADGCPRLLSDV 142 S+ + PL VHV A E H G ERPG ADG P L +V Sbjct: 238 SRRRAQPL-VHVNCAALPESLAESELFGHARGAFSGATGERPGRFEAADGQPLFLDEV 294
>ASSY_STRR6 (Q8DRI5) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 398 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 330 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 181 ++ +G K + L + + H GR++H N LVG+ E E PGAV Sbjct: 226 VSLNGEVLKLADLIQKLNEIAGKHGVGRIDHVENRLVGIKSREIYECPGAV 276
>LON_BRUSU (Q8G0I7) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 301 RFRFGTIEGQSVVMVMTGLSMLNAG 375 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUME (Q8YHC6) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 301 RFRFGTIEGQSVVMVMTGLSMLNAG 375 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUAB (P0C113) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 301 RFRFGTIEGQSVVMVMTGLSMLNAG 375 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUA2 (Q2YPX3) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 301 RFRFGTIEGQSVVMVMTGLSMLNAG 375 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>MAAY3_SCHCO (P37934) Mating-type protein A-alpha Y3| Length = 926 Score = 28.5 bits (62), Expect = 4.0 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = -1 Query: 377 RPALSMLSPVMTMTTLWPSMVPK-RNLRP-WMSMLGMLLLATKLGDSSTGTIS*VLGTTR 204 +PA S S T + + ++P+ N P W +++GM T GT S LG T Sbjct: 830 QPAASFDSSSETSSMDFNWLLPQCANTAPDWSALIGMTPSTTSQIHVLGGTYSCELGGTN 889 Query: 203 PTNGPARFA 177 TN P FA Sbjct: 890 TTNAPLNFA 898
>ZN358_HUMAN (Q9NW07) Zinc finger protein 358| Length = 481 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -3 Query: 318 GSKAKPSPLDVHVRDALAGHEAG 250 GS++ PSP V D AGH+AG Sbjct: 394 GSRSTPSPTPVESSDPKAGHDAG 416
>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)| (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1) Length = 2688 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 167 PSAGRTAPGRSSASSCPTPT 226 PSAG PGRS A + P PT Sbjct: 2618 PSAGHVLPGRSPAQAQPAPT 2637
>RS5_CAMJR (Q5HSA7) 30S ribosomal protein S5| Length = 147 Score = 26.2 bits (56), Expect(2) = 4.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -3 Query: 240 HRNHLVGVGHDEADERPGAVRPA 172 +R LVGVG+ +A E P A+R A Sbjct: 39 NRKGLVGVGYGKAKEVPDAIRKA 61 Score = 20.8 bits (42), Expect(2) = 4.7 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -1 Query: 164 AHVF*VMYPSAAVAISVTATRTTAMSCCRTPPMVELAPFLDM 39 AH V Y ++ + + + T ++ T P+VELA D+ Sbjct: 80 AHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDI 121
>RS5_CAMJE (Q9PLY8) 30S ribosomal protein S5| Length = 147 Score = 26.2 bits (56), Expect(2) = 4.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -3 Query: 240 HRNHLVGVGHDEADERPGAVRPA 172 +R LVGVG+ +A E P A+R A Sbjct: 39 NRKGLVGVGYGKAKEVPDAIRKA 61 Score = 20.8 bits (42), Expect(2) = 4.7 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -1 Query: 164 AHVF*VMYPSAAVAISVTATRTTAMSCCRTPPMVELAPFLDM 39 AH V Y ++ + + + T ++ T P+VELA D+ Sbjct: 80 AHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDI 121
>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining| factor) Length = 355 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +3 Query: 264 QQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWSDH 383 QQ H H H + K +H + K++ HD + Q++ DH Sbjct: 275 QQFHDHHHHQQQKQQFHDHHQQKQQF-HDHHQQQQQFHDH 313 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = +3 Query: 264 QQEHP*HGHPRAKVSL--WNHRRPKRRHGHDRTEHAQRWSDH 383 QQ+ H HP+ K +H + +++ HD + Q++ DH Sbjct: 262 QQQQQFHDHPQQKQQFHDHHHHQQQKQQFHDHHQQKQQFHDH 303 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = +3 Query: 264 QQEHP*HGHPRAKVSLWNHRRPKRRHG-HDRTEHAQRWSDHP 386 QQ+ H H + K +H + +++ HD + Q++ DHP Sbjct: 230 QQQQQFHDHHQQKQQFHDHHQQQQQQQFHDHPQQQQQFHDHP 271
>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining| factor) Length = 395 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +3 Query: 264 QQEHP*HGHPRAKVSLWNHRRPKRR--HGHDRTEHAQRWSDH 383 QQ+H H HP+ K +H + +++ H + + Q++ DH Sbjct: 276 QQQHQFHDHPQQKQQFHDHPQQQQQFHDHHHQQQQKQQFHDH 317
>MCM2_XENLA (P55861) DNA replication licensing factor MCM2 (x.MCM2)| Length = 886 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Frame = -3 Query: 345 DHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPG-----AV 181 D +D S+ + + + +RD G E GR+ R L+ +E ++RP A Sbjct: 82 DEEDVEDLTASQREAAEQSMRMRDREMGRELGRM--RRGLLYDSDEEEEDRPARKRRMAE 139 Query: 180 RPADGCP 160 R A+G P Sbjct: 140 RAAEGAP 146
>PUR9_LISMO (Q8Y6C5) Bifunctional purine biosynthesis protein purH [Includes:| Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase); IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)] Length = 509 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/61 (24%), Positives = 27/61 (44%) Frame = +1 Query: 199 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 378 + LV+ N Y ++ P ++I N+DI G + + V V+ + +A L Sbjct: 94 IDLVIVNLYPFQETIQKPGVTLEEAIENIDIGGPSMLRSAAKNYAAVTVVVDTADYDAVL 153 Query: 379 T 381 T Sbjct: 154 T 154
>TLR13_MOUSE (Q6R5N8) Toll-like receptor 13 precursor| Length = 991 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +1 Query: 220 TYEMVPVLESPSFVASKSIPNMDIQGRR 303 TYE L+ P F+ KS+ ++++G+R Sbjct: 577 TYETTRTLQYPPFIKLKSLKQLNLEGQR 604
>NU4M_STRCA (O21406) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 458 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/35 (28%), Positives = 19/35 (54%) Frame = -1 Query: 395 SSIWVVRPALSMLSPVMTMTTLWPSMVPKRNLRPW 291 +S+W S+L +++ L P+ P +N+ PW Sbjct: 21 ASLWTNTTTYSLLIATISLQWLNPTYFPHKNMTPW 55
>KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 476 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +3 Query: 282 HGHPRAKVSLWNHRRPKRRHGHDRTE 359 HGH S+W+ HGH R E Sbjct: 69 HGHGHTHESIWHGHAHSHDHGHSREE 94
>PHLPL_HUMAN (Q6ZVD8) PH domain leucine-rich repeat protein phosphatase-like (EC| 3.1.3.16) Length = 1323 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -1 Query: 71 PMVELAPFLDMTRLVLCAVPDWS 3 P+ L FLD++R +L VPDW+ Sbjct: 499 PVPSLLTFLDLSRNLLECVPDWA 521
>HEM2_PSEAE (Q59643) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALAD) (ALADH) Length = 337 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/59 (37%), Positives = 25/59 (42%) Frame = -3 Query: 348 HDHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPA 172 H D L DG +DV VR AL+ EAG V D D R GA+R A Sbjct: 136 HGQDGILDDDGYVLNDVSIDVLVRQALSHAEAGA------QVVAPSDMMDGRIGAIREA 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,256,994 Number of Sequences: 219361 Number of extensions: 967190 Number of successful extensions: 2986 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2982 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
