| Clone Name | bast44d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds Length = 1282 Score = 260 bits (131), Expect = 2e-66 Identities = 150/155 (96%), Gaps = 1/155 (0%) Strand = Plus / Plus Query: 82 ccatggcgagcagcggcagcctggccggtctggcggtgctgctcaccgccgtgctgtgcc 141 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 63 ccatggcgagcagcggcgggctggccggtctggcggtgctgctcaccgccgtgctgtgcc 122 Query: 142 tgcagctgccggtccacagccgcgcccagctgcagcgtcgggttctacaacaccacctgc 201 ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| Sbjct: 123 tgcagctgccggtccacagccgcgcgcagctgc-gcgtggggttctacaacaccacctgc 181 Query: 202 cccaacgccgaggccatcgtccggcaggccgtcac 236 ||||||||||||||||||||||||||||||||||| Sbjct: 182 cccaacgccgaggccatcgtccggcaggccgtcac 216
>ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1071 Score = 77.8 bits (39), Expect = 1e-11 Identities = 70/79 (88%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| | | Sbjct: 73 agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 131 Query: 219 cgtccggcaggccgtcacc 237 |||||||||||||||||| Sbjct: 132 ggtccggcaggccgtcacc 150
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 77.8 bits (39), Expect = 1e-11 Identities = 70/79 (88%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| | | Sbjct: 12534345 agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 12534403 Query: 219 cgtccggcaggccgtcacc 237 |||||||||||||||||| Sbjct: 12534404 ggtccggcaggccgtcacc 12534422 Score = 63.9 bits (32), Expect = 2e-07 Identities = 66/76 (86%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||| || ||||||||| || |||||||||||||| | |||||||| ||||||||| | Sbjct: 12547310 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 12547368 Query: 219 cgtccggcaggccgtc 234 ||||||||||||||| Sbjct: 12547369 ggtccggcaggccgtc 12547384 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 176 gcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234 |||||||||||||| | | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 12482978 gcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 12483036
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 77.8 bits (39), Expect = 1e-11 Identities = 70/79 (88%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| | | Sbjct: 45955 agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 46013 Query: 219 cgtccggcaggccgtcacc 237 |||||||||||||||||| Sbjct: 46014 ggtccggcaggccgtcacc 46032 Score = 63.9 bits (32), Expect = 2e-07 Identities = 66/76 (86%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||| || ||||||||| || |||||||||||||| | |||||||| ||||||||| | Sbjct: 58920 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 58978 Query: 219 cgtccggcaggccgtc 234 ||||||||||||||| Sbjct: 58979 ggtccggcaggccgtc 58994
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 77.8 bits (39), Expect = 1e-11 Identities = 70/79 (88%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| | | Sbjct: 119960 agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 120018 Query: 219 cgtccggcaggccgtcacc 237 |||||||||||||||||| Sbjct: 120019 ggtccggcaggccgtcacc 120037 Score = 63.9 bits (32), Expect = 2e-07 Identities = 66/76 (86%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||| || ||||||||| || |||||||||||||| | |||||||| ||||||||| | Sbjct: 132925 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 132983 Query: 219 cgtccggcaggccgtc 234 ||||||||||||||| Sbjct: 132984 ggtccggcaggccgtc 132999 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 176 gcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234 |||||||||||||| | | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 68593 gcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 68651
>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full insert sequence Length = 5938 Score = 77.8 bits (39), Expect = 1e-11 Identities = 70/79 (88%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| | | Sbjct: 135 agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 193 Query: 219 cgtccggcaggccgtcacc 237 |||||||||||||||||| Sbjct: 194 ggtccggcaggccgtcacc 212
>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for class III peroxidase 14 precursor, exons 1-3 Length = 5620 Score = 77.8 bits (39), Expect = 1e-11 Identities = 70/79 (88%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| | | Sbjct: 73 agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 131 Query: 219 cgtccggcaggccgtcacc 237 |||||||||||||||||| Sbjct: 132 ggtccggcaggccgtcacc 150
>emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene) Length = 1398 Score = 69.9 bits (35), Expect = 3e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 184 ttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234 |||||| |||||| ||||||||||||||||||| ||||||| ||||||||| Sbjct: 168 ttctacgacaccagctgccccaacgccgaggccctcgtccgccaggccgtc 218
>ref|NM_183816.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1062 Score = 63.9 bits (32), Expect = 2e-07 Identities = 66/76 (86%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||| || ||||||||| || |||||||||||||| | |||||||| ||||||||| | Sbjct: 76 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 134 Query: 219 cgtccggcaggccgtc 234 ||||||||||||||| Sbjct: 135 ggtccggcaggccgtc 150
>dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107P11, full insert sequence Length = 1271 Score = 63.9 bits (32), Expect = 2e-07 Identities = 66/76 (86%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||| || ||||||||| || |||||||||||||| | |||||||| ||||||||| | Sbjct: 146 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 204 Query: 219 cgtccggcaggccgtc 234 ||||||||||||||| Sbjct: 205 ggtccggcaggccgtc 220
>dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full insert sequence Length = 1492 Score = 63.9 bits (32), Expect = 2e-07 Identities = 66/76 (86%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||| || ||||||||| || |||||||||||||| | |||||||| ||||||||| | Sbjct: 151 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 209 Query: 219 cgtccggcaggccgtc 234 ||||||||||||||| Sbjct: 210 ggtccggcaggccgtc 225
>tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx15 gene for class III peroxidase 15 precursor, exons 1-3 Length = 5322 Score = 63.9 bits (32), Expect = 2e-07 Identities = 66/76 (86%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218 ||||| || ||||||||| || |||||||||||||| | |||||||| ||||||||| | Sbjct: 76 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 134 Query: 219 cgtccggcaggccgtc 234 ||||||||||||||| Sbjct: 135 ggtccggcaggccgtc 150
>ref|NM_183810.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 176 gcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234 |||||||||||||| | | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 71 gcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 129
>dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001H23, full insert sequence Length = 1382 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 176 gcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234 |||||||||||||| | | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 178 gcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 236
>tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx12 gene for class III peroxidase 12 precursor, exons 1-3 Length = 3928 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 176 gcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234 |||||||||||||| | | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 71 gcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 129
>dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E07, full insert sequence Length = 1008 Score = 50.1 bits (25), Expect = 0.003 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggc 215 ||||| || ||||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 149 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggc 204
>gb|BC056999.1| Mus musculus neuropathy target esterase, mRNA (cDNA clone MGC:66981 IMAGE:6831507), complete cds Length = 4461 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 tggcggtgctgctcaccgccgtgct 136 ||||||||||| ||||||||||||| Sbjct: 289 tggcggtgctggtcaccgccgtgct 313
>gb|BC054789.1| Mus musculus neuropathy target esterase, mRNA (cDNA clone MGC:65634 IMAGE:6831507), complete cds Length = 4461 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 tggcggtgctgctcaccgccgtgct 136 ||||||||||| ||||||||||||| Sbjct: 289 tggcggtgctggtcaccgccgtgct 313
>dbj|AK162641.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830134O04 product:neuropathy target esterase, full insert sequence Length = 3840 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 tggcggtgctgctcaccgccgtgct 136 ||||||||||| ||||||||||||| Sbjct: 244 tggcggtgctggtcaccgccgtgct 268
>dbj|AK040720.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530020D05 product:neuropathy target esterase, full insert sequence Length = 2892 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 tggcggtgctgctcaccgccgtgct 136 ||||||||||| ||||||||||||| Sbjct: 325 tggcggtgctggtcaccgccgtgct 349
>dbj|AK089095.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430039F18 product:neuropathy target esterase, full insert sequence Length = 4265 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 tggcggtgctgctcaccgccgtgct 136 ||||||||||| ||||||||||||| Sbjct: 232 tggcggtgctggtcaccgccgtgct 256
>gb|AF173829.1|AF173829 Mus musculus neuropathy target esterase homolog mRNA, complete cds Length = 4459 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 tggcggtgctgctcaccgccgtgct 136 ||||||||||| ||||||||||||| Sbjct: 271 tggcggtgctggtcaccgccgtgct 295
>ref|NM_015801.1| Mus musculus neuropathy target esterase (Nte), mRNA Length = 4459 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 tggcggtgctgctcaccgccgtgct 136 ||||||||||| ||||||||||||| Sbjct: 271 tggcggtgctggtcaccgccgtgct 295
>gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome 8, complete sequence Length = 182564 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 tggcggtgctgctcaccgccgtgct 136 ||||||||||| ||||||||||||| Sbjct: 43546 tggcggtgctggtcaccgccgtgct 43570
>gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-Au1-tagged F protein gene, complete cds Length = 1659 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 acaacaccacctgccccaacgccg 211 |||||||||||||||||| ||||| Sbjct: 1238 acaacaccacctgccccaccgccg 1261
>dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, complete and partial cds Length = 70631 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cgcccagctgcagcgtcggg 183 |||||||||||||||||||| Sbjct: 6927 cgcccagctgcagcgtcggg 6946
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 cctggccggtctggcggtgctgct 124 ||||||||||||||| |||||||| Sbjct: 952400 cctggccggtctggccgtgctgct 952377
>gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, complete sequence Length = 178778 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 tgctgtgcctgcagctgccggtcc 156 ||||||||||||||||||| |||| Sbjct: 65419 tgctgtgcctgcagctgcccgtcc 65442
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 cgccgaggccatcgtccggcaggc 230 |||||||||||||| ||||||||| Sbjct: 4743057 cgccgaggccatcgaccggcaggc 4743034
>dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-1391J07, complete sequence Length = 121103 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 tgctgtgcctgcagctgccggtcc 156 ||||||||||||||||||| |||| Sbjct: 54446 tgctgtgcctgcagctgcccgtcc 54423
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gcggcagcctggccggtctg 113 |||||||||||||||||||| Sbjct: 4650072 gcggcagcctggccggtctg 4650053 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,675,233 Number of Sequences: 3902068 Number of extensions: 1675233 Number of successful extensions: 41347 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40919 Number of HSP's gapped (non-prelim): 427 length of query: 238 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 216 effective length of database: 17,147,199,772 effective search space: 3703795150752 effective search space used: 3703795150752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)