ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast44d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, com... 260 2e-66
2ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predic... 78 1e-11
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
4dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
5dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
6dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 1e-11
7tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 78 1e-11
8emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene) 70 3e-09
9ref|NM_183816.1| Oryza sativa (japonica cultivar-group), predic... 64 2e-07
10dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
11dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
12tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 64 2e-07
13ref|NM_183810.1| Oryza sativa (japonica cultivar-group), predic... 62 8e-07
14dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
15tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 62 8e-07
16dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.003
17gb|BC056999.1| Mus musculus neuropathy target esterase, mRNA (cD... 42 0.77
18gb|BC054789.1| Mus musculus neuropathy target esterase, mRNA (cD... 42 0.77
19dbj|AK162641.1| Mus musculus adult male bone cDNA, RIKEN full-le... 42 0.77
20dbj|AK040720.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 0.77
21dbj|AK089095.1| Mus musculus 2 days neonate thymus thymic cells ... 42 0.77
22gb|AF173829.1|AF173829 Mus musculus neuropathy target esterase h... 42 0.77
23ref|NM_015801.1| Mus musculus neuropathy target esterase (Nte), ... 42 0.77
24gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome... 42 0.77
25gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-A... 40 3.1
26dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, compl... 40 3.1
27gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 3.1
28gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, com... 40 3.1
29dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.1
30dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 3.1
31gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 3.1

>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds
          Length = 1282

 Score =  260 bits (131), Expect = 2e-66
 Identities = 150/155 (96%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 82  ccatggcgagcagcggcagcctggccggtctggcggtgctgctcaccgccgtgctgtgcc 141
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ccatggcgagcagcggcgggctggccggtctggcggtgctgctcaccgccgtgctgtgcc 122

                                                                       
Query: 142 tgcagctgccggtccacagccgcgcccagctgcagcgtcgggttctacaacaccacctgc 201
           ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||
Sbjct: 123 tgcagctgccggtccacagccgcgcgcagctgc-gcgtggggttctacaacaccacctgc 181

                                              
Query: 202 cccaacgccgaggccatcgtccggcaggccgtcac 236
           |||||||||||||||||||||||||||||||||||
Sbjct: 182 cccaacgccgaggccatcgtccggcaggccgtcac 216



to top

>ref|NM_183815.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1071

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 70/79 (88%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
           ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| |  |
Sbjct: 73  agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 131

                              
Query: 219 cgtccggcaggccgtcacc 237
            ||||||||||||||||||
Sbjct: 132 ggtccggcaggccgtcacc 150



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 70/79 (88%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                            
Query: 159      agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
                ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| |  |
Sbjct: 12534345 agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 12534403

                                   
Query: 219      cgtccggcaggccgtcacc 237
                 ||||||||||||||||||
Sbjct: 12534404 ggtccggcaggccgtcacc 12534422



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 66/76 (86%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                            
Query: 159      agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
                ||||| || ||||||||| || |||||||||||||| | |||||||| |||||||||  |
Sbjct: 12547310 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 12547368

                                
Query: 219      cgtccggcaggccgtc 234
                 |||||||||||||||
Sbjct: 12547369 ggtccggcaggccgtc 12547384



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 176      gcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234
                |||||||||||||| | | || ||||||||||||||||||  ||||||| |||||||||
Sbjct: 12482978 gcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 12483036



to top

>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0537A05
          Length = 152396

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 70/79 (88%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                         
Query: 159   agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
             ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| |  |
Sbjct: 45955 agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 46013

                                
Query: 219   cgtccggcaggccgtcacc 237
              ||||||||||||||||||
Sbjct: 46014 ggtccggcaggccgtcacc 46032



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 66/76 (86%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                         
Query: 159   agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
             ||||| || ||||||||| || |||||||||||||| | |||||||| |||||||||  |
Sbjct: 58920 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 58978

                             
Query: 219   cgtccggcaggccgtc 234
              |||||||||||||||
Sbjct: 58979 ggtccggcaggccgtc 58994



to top

>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1135C02
          Length = 152306

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 70/79 (88%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                          
Query: 159    agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
              ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| |  |
Sbjct: 119960 agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 120018

                                 
Query: 219    cgtccggcaggccgtcacc 237
               ||||||||||||||||||
Sbjct: 120019 ggtccggcaggccgtcacc 120037



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 66/76 (86%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                          
Query: 159    agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
              ||||| || ||||||||| || |||||||||||||| | |||||||| |||||||||  |
Sbjct: 132925 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 132983

                              
Query: 219    cgtccggcaggccgtc 234
               |||||||||||||||
Sbjct: 132984 ggtccggcaggccgtc 132999



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 176   gcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234
             |||||||||||||| | | || ||||||||||||||||||  ||||||| |||||||||
Sbjct: 68593 gcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 68651



to top

>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full
           insert sequence
          Length = 5938

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 70/79 (88%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
           ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| |  |
Sbjct: 135 agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 193

                              
Query: 219 cgtccggcaggccgtcacc 237
            ||||||||||||||||||
Sbjct: 194 ggtccggcaggccgtcacc 212



to top

>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for
           class III peroxidase 14 precursor, exons 1-3
          Length = 5620

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 70/79 (88%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
           ||||||| |||||||||| || |||||||||||||||| ||||||||| |||||| |  |
Sbjct: 73  agccgcggccagctgcag-gtggggttctacaacaccagctgccccaatgccgagacgct 131

                              
Query: 219 cgtccggcaggccgtcacc 237
            ||||||||||||||||||
Sbjct: 132 ggtccggcaggccgtcacc 150



to top

>emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene)
          Length = 1398

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 184 ttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234
           |||||| |||||| ||||||||||||||||||| ||||||| |||||||||
Sbjct: 168 ttctacgacaccagctgccccaacgccgaggccctcgtccgccaggccgtc 218



to top

>ref|NM_183816.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1062

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 66/76 (86%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
           ||||| || ||||||||| || |||||||||||||| | |||||||| |||||||||  |
Sbjct: 76  agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 134

                           
Query: 219 cgtccggcaggccgtc 234
            |||||||||||||||
Sbjct: 135 ggtccggcaggccgtc 150



to top

>dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107P11, full
           insert sequence
          Length = 1271

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 66/76 (86%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
           ||||| || ||||||||| || |||||||||||||| | |||||||| |||||||||  |
Sbjct: 146 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 204

                           
Query: 219 cgtccggcaggccgtc 234
            |||||||||||||||
Sbjct: 205 ggtccggcaggccgtc 220



to top

>dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full
           insert sequence
          Length = 1492

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 66/76 (86%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
           ||||| || ||||||||| || |||||||||||||| | |||||||| |||||||||  |
Sbjct: 151 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 209

                           
Query: 219 cgtccggcaggccgtc 234
            |||||||||||||||
Sbjct: 210 ggtccggcaggccgtc 225



to top

>tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx15 gene for
           class III peroxidase 15 precursor, exons 1-3
          Length = 5322

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 66/76 (86%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggccat 218
           ||||| || ||||||||| || |||||||||||||| | |||||||| |||||||||  |
Sbjct: 76  agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggcgct 134

                           
Query: 219 cgtccggcaggccgtc 234
            |||||||||||||||
Sbjct: 135 ggtccggcaggccgtc 150



to top

>ref|NM_183810.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 176 gcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234
           |||||||||||||| | | || ||||||||||||||||||  ||||||| |||||||||
Sbjct: 71  gcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 129



to top

>dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001H23, full
           insert sequence
          Length = 1382

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 176 gcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234
           |||||||||||||| | | || ||||||||||||||||||  ||||||| |||||||||
Sbjct: 178 gcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 236



to top

>tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx12 gene for
           class III peroxidase 12 precursor, exons 1-3
          Length = 3928

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 176 gcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccggcaggccgtc 234
           |||||||||||||| | | || ||||||||||||||||||  ||||||| |||||||||
Sbjct: 71  gcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccgccaggccgtc 129



to top

>dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E07, full
           insert sequence
          Length = 1008

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 50/57 (87%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 159 agccgcgcccagctgcagcgtcgggttctacaacaccacctgccccaacgccgaggc 215
           ||||| || ||||||||| || |||||||||||||| | |||||||| |||||||||
Sbjct: 149 agccgggcgcagctgcag-gtggggttctacaacacgagctgccccaccgccgaggc 204



to top

>gb|BC056999.1| Mus musculus neuropathy target esterase, mRNA (cDNA clone MGC:66981
           IMAGE:6831507), complete cds
          Length = 4461

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 289 tggcggtgctggtcaccgccgtgct 313



to top

>gb|BC054789.1| Mus musculus neuropathy target esterase, mRNA (cDNA clone MGC:65634
           IMAGE:6831507), complete cds
          Length = 4461

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 289 tggcggtgctggtcaccgccgtgct 313



to top

>dbj|AK162641.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
           library, clone:9830134O04 product:neuropathy target
           esterase, full insert sequence
          Length = 3840

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 244 tggcggtgctggtcaccgccgtgct 268



to top

>dbj|AK040720.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530020D05 product:neuropathy
           target esterase, full insert sequence
          Length = 2892

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 325 tggcggtgctggtcaccgccgtgct 349



to top

>dbj|AK089095.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430039F18
           product:neuropathy target esterase, full insert sequence
          Length = 4265

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 232 tggcggtgctggtcaccgccgtgct 256



to top

>gb|AF173829.1|AF173829 Mus musculus neuropathy target esterase homolog mRNA, complete cds
          Length = 4459

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 271 tggcggtgctggtcaccgccgtgct 295



to top

>ref|NM_015801.1| Mus musculus neuropathy target esterase (Nte), mRNA
          Length = 4459

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 271 tggcggtgctggtcaccgccgtgct 295



to top

>gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome 8, complete sequence
          Length = 182564

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 112   tggcggtgctgctcaccgccgtgct 136
             ||||||||||| |||||||||||||
Sbjct: 43546 tggcggtgctggtcaccgccgtgct 43570



to top

>gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-Au1-tagged F protein
            gene, complete cds
          Length = 1659

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 188  acaacaccacctgccccaacgccg 211
            |||||||||||||||||| |||||
Sbjct: 1238 acaacaccacctgccccaccgccg 1261



to top

>dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, complete and partial cds
          Length = 70631

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  cgcccagctgcagcgtcggg 183
            ||||||||||||||||||||
Sbjct: 6927 cgcccagctgcagcgtcggg 6946



to top

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 101    cctggccggtctggcggtgctgct 124
              ||||||||||||||| ||||||||
Sbjct: 952400 cctggccggtctggccgtgctgct 952377



to top

>gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, complete sequence
          Length = 178778

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   tgctgtgcctgcagctgccggtcc 156
             ||||||||||||||||||| ||||
Sbjct: 65419 tgctgtgcctgcagctgcccgtcc 65442



to top

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 207     cgccgaggccatcgtccggcaggc 230
               |||||||||||||| |||||||||
Sbjct: 4743057 cgccgaggccatcgaccggcaggc 4743034



to top

>dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-1391J07, complete
             sequence
          Length = 121103

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   tgctgtgcctgcagctgccggtcc 156
             ||||||||||||||||||| ||||
Sbjct: 54446 tgctgtgcctgcagctgcccgtcc 54423



to top

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 94      gcggcagcctggccggtctg 113
               ||||||||||||||||||||
Sbjct: 4650072 gcggcagcctggccggtctg 4650053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,675,233
Number of Sequences: 3902068
Number of extensions: 1675233
Number of successful extensions: 41347
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40919
Number of HSP's gapped (non-prelim): 427
length of query: 238
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 216
effective length of database: 17,147,199,772
effective search space: 3703795150752
effective search space used: 3703795150752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top