ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast44d05 |
|---|---|
| Clone Library Name | barley_pub |
>PGTA_PONPY (Q5NVK5) Geranylgeranyl transferase type-2 alpha subunit (EC| 2.5.1.60) (Geranylgeranyl transferase type II alpha subunit) (Rab geranylgeranyltransferase alpha subunit) (Rab geranyl-geranyltransferase alpha subunit) (Rab GG transferase alpha) ( Length = 567 Score = 32.7 bits (73), Expect = 0.47 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +1 Query: 346 RHCPNHAWNWKLPALTVRRRLSDHPWRRLLPAHSVQRHC 462 R+ P+H W LPA ++ +L H +R + A VQ+ C Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTAGDVQKEC 331
>PGTA_HUMAN (Q92696) Geranylgeranyl transferase type-2 alpha subunit (EC| 2.5.1.60) (Geranylgeranyl transferase type II alpha subunit) (Rab geranylgeranyltransferase alpha subunit) (Rab geranyl-geranyltransferase alpha subunit) (Rab GG transferase alpha) ( Length = 567 Score = 32.7 bits (73), Expect = 0.47 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +1 Query: 346 RHCPNHAWNWKLPALTVRRRLSDHPWRRLLPAHSVQRHC 462 R+ P+H W LPA ++ +L H +R + A VQ+ C Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTAGDVQKEC 331
>YL_DROME (P98163) Putative vitellogenin receptor precursor (Protein| yolkless) (YL) Length = 1984 Score = 32.3 bits (72), Expect = 0.62 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 15/97 (15%) Frame = -2 Query: 344 WTEWA-----------GSSLRQGCSERCHWTARAECPRHQAL*GWRLSTARAGNSHRQGW 198 WT+W GS R S+ W HQ W A+ G+ Sbjct: 533 WTDWGEKPMIGRASMDGSRSRPIVSDNIEWPNGIALDMHQQRIYW--VDAKLGSVQTVRP 590 Query: 197 *ETCRRTVRVGSLRSQASL----EQCHWTEWAGSSLH 99 T RRTV G L+ L +Q +W++WA S+H Sbjct: 591 DGTGRRTVLDGMLKHPYGLAIFEDQLYWSDWATKSVH 627
>SPP24_SHEEP (Q70TH4) Secreted phosphoprotein 24 precursor (Spp-24) (Secreted| phosphoprotein 2) Length = 203 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -2 Query: 188 CRRTVRVGSLRSQASLEQCHWTEWAGSS 105 CR TVR+ + R Q +CHW+ +GSS Sbjct: 110 CRSTVRMSAERVQDVWVRCHWSSSSGSS 137
>UNC5B_XENLA (Q8JGT4) Netrin receptor UNC5B precursor (UNC-5 homolog) (Protein| XUNC-5) Length = 943 Score = 30.8 bits (68), Expect = 1.8 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 18/83 (21%) Frame = -2 Query: 464 GQCRWTEWAGSSLR--QGWSERRRRTVRAG-----------SFQFQAWLGQC----RWTE 336 G WTEW+ + R GW +R R +Q A C WTE Sbjct: 251 GWSSWTEWSPCNNRCGHGWQKRTRTCTNPAPLNGGTMCEGQQYQKFACNTMCPVDGGWTE 310 Query: 335 WAGSSLRQGCSERC-HWTARAEC 270 W+ S CS C HW +R EC Sbjct: 311 WSKWS---ACSTECTHWRSR-EC 329
>HEM3_ANASP (Q8YVU6) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 323 Score = 29.6 bits (65), Expect = 4.0 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = -2 Query: 191 TCRRTVRVGSLRSQASLEQCHW 126 + RRT+R+GS +SQ +L Q +W Sbjct: 7 SARRTIRIGSRKSQLALVQTYW 28
>PGTA_MOUSE (Q9JHK4) Geranylgeranyl transferase type-2 alpha subunit (EC| 2.5.1.60) (Geranylgeranyl transferase type II alpha subunit) (Rab geranylgeranyltransferase alpha subunit) (Rab geranyl-geranyltransferase alpha subunit) (Rab GG transferase alpha) ( Length = 567 Score = 29.6 bits (65), Expect = 4.0 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = +1 Query: 346 RHCPNHAWNWKLPALTVRRRLSDHPWRRLLPAHSVQRHC 462 R+ P+H W LPA ++ L H +R + Q+ C Sbjct: 293 RNRPSHVWLCDLPAASLNDHLPQHTFRVIWTGSDTQKEC 331
>SPP24_BOVIN (Q27967) Secreted phosphoprotein 24 precursor (Spp-24) (Secreted| phosphoprotein 2) Length = 203 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -2 Query: 188 CRRTVRVGSLRSQASLEQCHWTEWAGSS 105 CR TVR+ + + Q +CHW+ +GSS Sbjct: 110 CRSTVRMSAEQVQNVWVRCHWSSSSGSS 137
>FDH2_ORYSA (Q67U69) Formate dehydrogenase 2, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 2) (FDH 2) Length = 378 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 88 DHPWWRLLPAHSVQWHCSNDACDRRL 165 DHPW R +P H++ HCS D +L Sbjct: 318 DHPW-RYMPNHAMTPHCSGTTIDGQL 342
>PGTA_RAT (Q08602) Geranylgeranyl transferase type-2 alpha subunit (EC| 2.5.1.60) (Geranylgeranyl transferase type II alpha subunit) (Rab geranylgeranyltransferase alpha subunit) (Rab geranyl-geranyltransferase alpha subunit) (Rab GG transferase alpha) (Ra Length = 567 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +1 Query: 346 RHCPNHAWNWKLPALTVRRRLSDHPWRRLLPAHSVQRHC 462 R+ P+H W LPA ++ +L H +R + Q+ C Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKEC 331
>ARHGB_RAT (Q9ES67) Rho guanine nucleotide exchange factor 11 (RhoGEF glutamate| transport modulator GTRAP48) Length = 1527 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 100 WRLLPAHSVQWHCSNDACDRRLPTLTVRRHVSYHPW 207 W LLP H+V+ + + D PT +V ++ HPW Sbjct: 1220 WSLLPGHTVKTQAAGEPEDDLTPTPSV-VSITSHPW 1254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,750,761 Number of Sequences: 219361 Number of extensions: 749973 Number of successful extensions: 2156 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1936 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2149 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
