ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast44d05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_194739.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0004A06.11), mRNA Length = 882 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||||||||||| |||| ||||||||||||||| || |||||| |||||||||||||| Sbjct: 185 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 244 Query: 119 actccgtccagtggc 133 || ||||||| |||| Sbjct: 245 acgccgtccattggc 259 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||||||||||| |||| ||||||||||| ||| || || ||| |||||||||||||| Sbjct: 185 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 244 Query: 335 actccgtcca 344 || ||||||| Sbjct: 245 acgccgtcca 254 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 67 gccgtccagtgacacctctccgaccacccctggtggaggctactacccgcccac 120 ||||||||||| ||| || |||||||| || ||||||||||||||||||||||| Sbjct: 345 gccgtccagtggcacgtccccgaccacgccaggtggaggctactacccgcccac 398 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||| ||||||||||| || ||||| || || |||||||| |||||||||||| Sbjct: 730 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 789 Query: 119 actccgtcca 128 | ||||||| Sbjct: 790 aagccgtcca 799 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactac 328 ||||| |||||| ||||||||||| ||| || |||| ||| || || |||||||||||| Sbjct: 331 gacacgccgcccttgccgtccagtggcacgtccccgaccacgccaggtggaggctactac 390 Query: 329 ccgcccac 336 |||||||| Sbjct: 391 ccgcccac 398 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 405 cctctccgaccacccctggcggaggctactacccgcccactccgtcca 452 ||||||||||||| || || ||| |||||||||||||||| ||||||| Sbjct: 207 cctctccgaccacaccgggtggaagctactacccgcccacgccgtcca 254 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccgaacacccctggcggaggct 323 |||||||||| ||||||||||||| ||| || |||||||||| Sbjct: 273 cgccgtccagcgacacctctccgaccacaccgggcggaggct 314 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggaggct 107 |||||||||| ||||||||||||||||| || || ||||||| Sbjct: 273 cgccgtccagcgacacctctccgaccacaccgggcggaggct 314 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||| |||| ||||||||||| || |||| || || || ||||| |||||||||||| Sbjct: 730 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 789 Query: 335 actccgtccagcggcac 351 | ||||||| |||||| Sbjct: 790 aagccgtccatcggcac 806 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 74 agtgacacctctccgaccacccctggtggaggctactacccgccc 118 ||||||||||| ||||| || |||||||| ||| ||||||||||| Sbjct: 586 agtgacacctccccgacgacacctggtggcggcaactacccgccc 630 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 410 ccgaccacccctggcggaggctactacccgcccac 444 |||||||| || || |||||||||||||||||||| Sbjct: 364 ccgaccacgccaggtggaggctactacccgcccac 398
>ref|NM_191846.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1944 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||||||||||| |||| ||||||||||||||| || |||||| |||||||||||||| Sbjct: 805 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 864 Query: 119 actccgtccagtggc 133 || ||||||| |||| Sbjct: 865 acgccgtccattggc 879 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||||||||||| ||| || |||||||| || ||||||||||||||||||||| Sbjct: 958 ccgccctcgccgtccagtggcacgtccccgaccacgccaggtggaggctactacccgccc 1017 Query: 119 ac 120 || Sbjct: 1018 ac 1019 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||||||||||| |||| ||||||||||| ||| || || ||| |||||||||||||| Sbjct: 805 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 864 Query: 335 actccgtcca 344 || ||||||| Sbjct: 865 acgccgtcca 874 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||| ||||||||||| || ||||| || || |||||||| |||||||||||| Sbjct: 1351 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 1410 Query: 119 actccgtcca 128 || ||||||| Sbjct: 1411 acgccgtcca 1420 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccga 305 |||||||||||| |||||||||||||||||||||||| Sbjct: 415 gacactccgccctcgccgtccagtgacacctctccga 451 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactac 328 ||||| |||||| |||||||||||| ||| || |||| ||| || || |||||||||||| Sbjct: 952 gacacgccgccctcgccgtccagtggcacgtccccgaccacgccaggtggaggctactac 1011 Query: 329 ccgcccac 336 |||||||| Sbjct: 1012 ccgcccac 1019 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggagg 105 |||||| ||||||||||||||||||||||||| || || |||||||| Sbjct: 421 ccgccctcgccgtccagtgacacctctccgacaacgccgggtggagg 467 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||| |||| ||||||||||| || |||| || || || ||||| |||||||||||| Sbjct: 1351 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 1410 Query: 335 actccgtccagcggcac 351 || ||||||| |||||| Sbjct: 1411 acgccgtccatcggcac 1427 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 405 cctctccgaccacccctggcggaggctactacccgcccactccgtcca 452 ||||||||||||| || || ||| |||||||||||||||| ||||||| Sbjct: 827 cctctccgaccacaccgggtggaagctactacccgcccacgccgtcca 874 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggagg 105 ||||||||||||||||||||||||| || || |||||||| Sbjct: 584 cgccgtccagtgacacctctccgacaacgccgggtggagg 623 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggaggct 107 |||||||||| ||||||||||||||||| || || ||||||| Sbjct: 893 cgccgtccagcgacacctctccgaccacaccgggcggaggct 934 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccgaacacccctggcggaggct 323 |||||||||| ||||||||||||| ||| || |||||||||| Sbjct: 893 cgccgtccagcgacacctctccgaccacaccgggcggaggct 934 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 74 agtgacacctctccgaccacccctggtggaggctactacccgccc 118 ||||||||||| ||||| || |||||||| ||| ||||||||||| Sbjct: 1207 agtgacacctccccgacaacacctggtggcggcaactacccgccc 1251 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccga 305 |||||||||||||||||||||||| Sbjct: 584 cgccgtccagtgacacctctccga 607 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 425 ggaggctactacccgcccactccgtccagcggcac 459 ||||| |||||||||||||| ||||||| |||||| Sbjct: 1393 ggagggtactacccgcccacgccgtccatcggcac 1427 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 410 ccgaccacccctggcggaggctactacccgcccac 444 |||||||| || || |||||||||||||||||||| Sbjct: 985 ccgaccacgccaggtggaggctactacccgcccac 1019 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggagg 105 |||||| |||| || ||||||||||||||||| || || |||||||| Sbjct: 499 ccgccctcgccttctagtgacacctctccgacaacgccaggtggagg 545 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 68 ccgtccagtgacacctctccgaccacccctggtggaggct 107 ||||||||||||||||| |||| ||| || ||||| |||| Sbjct: 274 ccgtccagtgacacctcgccgagcactccgggtggcggct 313
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||||||||||| |||| ||||||||||||||| || |||||| |||||||||||||| Sbjct: 1990192 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 1990251 Query: 119 actccgtccagtggc 133 || ||||||| |||| Sbjct: 1990252 acgccgtccattggc 1990266 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||||||||||| |||| ||||||||||| ||| || || ||| |||||||||||||| Sbjct: 1990192 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 1990251 Query: 335 actccgtcca 344 || ||||||| Sbjct: 1990252 acgccgtcca 1990261 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 67 gccgtccagtgacacctctccgaccacccctggtggaggctactacccgcccac 120 ||||||||||| ||| || |||||||| || ||||||||||||||||||||||| Sbjct: 1990352 gccgtccagtggcacgtccccgaccacgccaggtggaggctactacccgcccac 1990405 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||| ||||||||||| || ||||| || || |||||||| |||||||||||| Sbjct: 1990737 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 1990796 Query: 119 actccgtcca 128 | ||||||| Sbjct: 1990797 aagccgtcca 1990806 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactac 328 ||||| |||||| ||||||||||| ||| || |||| ||| || || |||||||||||| Sbjct: 1990338 gacacgccgcccttgccgtccagtggcacgtccccgaccacgccaggtggaggctactac 1990397 Query: 329 ccgcccac 336 |||||||| Sbjct: 1990398 ccgcccac 1990405 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 405 cctctccgaccacccctggcggaggctactacccgcccactccgtcca 452 ||||||||||||| || || ||| |||||||||||||||| ||||||| Sbjct: 1990214 cctctccgaccacaccgggtggaagctactacccgcccacgccgtcca 1990261 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggaggct 107 |||||||||| ||||||||||||||||| || || ||||||| Sbjct: 1990280 cgccgtccagcgacacctctccgaccacaccgggcggaggct 1990321 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccgaacacccctggcggaggct 323 |||||||||| ||||||||||||| ||| || |||||||||| Sbjct: 1990280 cgccgtccagcgacacctctccgaccacaccgggcggaggct 1990321 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||| |||| ||||||||||| || |||| || || || ||||| |||||||||||| Sbjct: 1990737 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 1990796 Query: 335 actccgtccagcggcac 351 | ||||||| |||||| Sbjct: 1990797 aagccgtccatcggcac 1990813 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 74 agtgacacctctccgaccacccctggtggaggctactacccgccc 118 ||||||||||| ||||| || |||||||| ||| ||||||||||| Sbjct: 1990593 agtgacacctccccgacgacacctggtggcggcaactacccgccc 1990637 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 410 ccgaccacccctggcggaggctactacccgcccac 444 |||||||| || || |||||||||||||||||||| Sbjct: 1990371 ccgaccacgccaggtggaggctactacccgcccac 1990405
>gb|AC099734.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0004A06, complete sequence Length = 153510 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||||||||||| |||| ||||||||||||||| || |||||| |||||||||||||| Sbjct: 80921 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 80980 Query: 119 actccgtccagtggc 133 || ||||||| |||| Sbjct: 80981 acgccgtccattggc 80995 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||||||||||| |||| ||||||||||| ||| || || ||| |||||||||||||| Sbjct: 80921 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 80980 Query: 335 actccgtcca 344 || ||||||| Sbjct: 80981 acgccgtcca 80990 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 67 gccgtccagtgacacctctccgaccacccctggtggaggctactacccgcccac 120 ||||||||||| ||| || |||||||| || ||||||||||||||||||||||| Sbjct: 81081 gccgtccagtggcacgtccccgaccacgccaggtggaggctactacccgcccac 81134 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||| ||||||||||| || ||||| || || |||||||| |||||||||||| Sbjct: 81466 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 81525 Query: 119 actccgtcca 128 | ||||||| Sbjct: 81526 aagccgtcca 81535 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactac 328 ||||| |||||| ||||||||||| ||| || |||| ||| || || |||||||||||| Sbjct: 81067 gacacgccgcccttgccgtccagtggcacgtccccgaccacgccaggtggaggctactac 81126 Query: 329 ccgcccac 336 |||||||| Sbjct: 81127 ccgcccac 81134 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 405 cctctccgaccacccctggcggaggctactacccgcccactccgtcca 452 ||||||||||||| || || ||| |||||||||||||||| ||||||| Sbjct: 80943 cctctccgaccacaccgggtggaagctactacccgcccacgccgtcca 80990 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccgaacacccctggcggaggct 323 |||||||||| ||||||||||||| ||| || |||||||||| Sbjct: 81009 cgccgtccagcgacacctctccgaccacaccgggcggaggct 81050 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggaggct 107 |||||||||| ||||||||||||||||| || || ||||||| Sbjct: 81009 cgccgtccagcgacacctctccgaccacaccgggcggaggct 81050 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||| |||| ||||||||||| || |||| || || || ||||| |||||||||||| Sbjct: 81466 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 81525 Query: 335 actccgtccagcggcac 351 | ||||||| |||||| Sbjct: 81526 aagccgtccatcggcac 81542 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 74 agtgacacctctccgaccacccctggtggaggctactacccgccc 118 ||||||||||| ||||| || |||||||| ||| ||||||||||| Sbjct: 81322 agtgacacctccccgacgacacctggtggcggcaactacccgccc 81366 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 410 ccgaccacccctggcggaggctactacccgcccac 444 |||||||| || || |||||||||||||||||||| Sbjct: 81100 ccgaccacgccaggtggaggctactacccgcccac 81134
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||||||||||| |||| ||||||||||||||| || |||||| |||||||||||||| Sbjct: 1990192 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 1990251 Query: 119 actccgtccagtggc 133 || ||||||| |||| Sbjct: 1990252 acgccgtccattggc 1990266 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||||||||||| |||| ||||||||||| ||| || || ||| |||||||||||||| Sbjct: 1990192 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 1990251 Query: 335 actccgtcca 344 || ||||||| Sbjct: 1990252 acgccgtcca 1990261 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 67 gccgtccagtgacacctctccgaccacccctggtggaggctactacccgcccac 120 ||||||||||| ||| || |||||||| || ||||||||||||||||||||||| Sbjct: 1990352 gccgtccagtggcacgtccccgaccacgccaggtggaggctactacccgcccac 1990405 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||| ||||||||||| || ||||| || || |||||||| |||||||||||| Sbjct: 1990737 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 1990796 Query: 119 actccgtcca 128 | ||||||| Sbjct: 1990797 aagccgtcca 1990806 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactac 328 ||||| |||||| ||||||||||| ||| || |||| ||| || || |||||||||||| Sbjct: 1990338 gacacgccgcccttgccgtccagtggcacgtccccgaccacgccaggtggaggctactac 1990397 Query: 329 ccgcccac 336 |||||||| Sbjct: 1990398 ccgcccac 1990405 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 405 cctctccgaccacccctggcggaggctactacccgcccactccgtcca 452 ||||||||||||| || || ||| |||||||||||||||| ||||||| Sbjct: 1990214 cctctccgaccacaccgggtggaagctactacccgcccacgccgtcca 1990261 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccgaacacccctggcggaggct 323 |||||||||| ||||||||||||| ||| || |||||||||| Sbjct: 1990280 cgccgtccagcgacacctctccgaccacaccgggcggaggct 1990321 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggaggct 107 |||||||||| ||||||||||||||||| || || ||||||| Sbjct: 1990280 cgccgtccagcgacacctctccgaccacaccgggcggaggct 1990321 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||| |||| ||||||||||| || |||| || || || ||||| |||||||||||| Sbjct: 1990737 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 1990796 Query: 335 actccgtccagcggcac 351 | ||||||| |||||| Sbjct: 1990797 aagccgtccatcggcac 1990813 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 74 agtgacacctctccgaccacccctggtggaggctactacccgccc 118 ||||||||||| ||||| || |||||||| ||| ||||||||||| Sbjct: 1990593 agtgacacctccccgacgacacctggtggcggcaactacccgccc 1990637 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 410 ccgaccacccctggcggaggctactacccgcccac 444 |||||||| || || |||||||||||||||||||| Sbjct: 1990371 ccgaccacgccaggtggaggctactacccgcccac 1990405
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||||||||||| |||| ||||||||||||||| || |||||| |||||||||||||| Sbjct: 30288202 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 30288261 Query: 119 actccgtccagtggc 133 || ||||||| |||| Sbjct: 30288262 acgccgtccattggc 30288276 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||||||||||| ||| || |||||||| || ||||||||||||||||||||| Sbjct: 30288355 ccgccctcgccgtccagtggcacgtccccgaccacgccaggtggaggctactacccgccc 30288414 Query: 119 ac 120 || Sbjct: 30288415 ac 30288416 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||||||||||| |||| ||||||||||| ||| || || ||| |||||||||||||| Sbjct: 30288202 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 30288261 Query: 335 actccgtcca 344 || ||||||| Sbjct: 30288262 acgccgtcca 30288271 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||| ||||||||||| || ||||| || || |||||||| |||||||||||| Sbjct: 30288748 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 30288807 Query: 119 actccgtcca 128 || ||||||| Sbjct: 30288808 acgccgtcca 30288817 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccga 305 |||||||||||| |||||||||||||||||||||||| Sbjct: 30287812 gacactccgccctcgccgtccagtgacacctctccga 30287848 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactac 328 ||||| |||||| |||||||||||| ||| || |||| ||| || || |||||||||||| Sbjct: 30288349 gacacgccgccctcgccgtccagtggcacgtccccgaccacgccaggtggaggctactac 30288408 Query: 329 ccgcccac 336 |||||||| Sbjct: 30288409 ccgcccac 30288416 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggagg 105 |||||| ||||||||||||||||||||||||| || || |||||||| Sbjct: 30287818 ccgccctcgccgtccagtgacacctctccgacaacgccgggtggagg 30287864 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||| |||| ||||||||||| || |||| || || || ||||| |||||||||||| Sbjct: 30288748 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 30288807 Query: 335 actccgtccagcggcac 351 || ||||||| |||||| Sbjct: 30288808 acgccgtccatcggcac 30288824 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 405 cctctccgaccacccctggcggaggctactacccgcccactccgtcca 452 ||||||||||||| || || ||| |||||||||||||||| ||||||| Sbjct: 30288224 cctctccgaccacaccgggtggaagctactacccgcccacgccgtcca 30288271 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggagg 105 ||||||||||||||||||||||||| || || |||||||| Sbjct: 30287981 cgccgtccagtgacacctctccgacaacgccgggtggagg 30288020 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccgaacacccctggcggaggct 323 |||||||||| ||||||||||||| ||| || |||||||||| Sbjct: 30288290 cgccgtccagcgacacctctccgaccacaccgggcggaggct 30288331 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggaggct 107 |||||||||| ||||||||||||||||| || || ||||||| Sbjct: 30288290 cgccgtccagcgacacctctccgaccacaccgggcggaggct 30288331 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 74 agtgacacctctccgaccacccctggtggaggctactacccgccc 118 ||||||||||| ||||| || |||||||| ||| ||||||||||| Sbjct: 30288604 agtgacacctccccgacaacacctggtggcggcaactacccgccc 30288648 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccga 305 |||||||||||||||||||||||| Sbjct: 30287981 cgccgtccagtgacacctctccga 30288004 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 425 ggaggctactacccgcccactccgtccagcggcac 459 ||||| |||||||||||||| ||||||| |||||| Sbjct: 30288790 ggagggtactacccgcccacgccgtccatcggcac 30288824 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 410 ccgaccacccctggcggaggctactacccgcccac 444 |||||||| || || |||||||||||||||||||| Sbjct: 30288382 ccgaccacgccaggtggaggctactacccgcccac 30288416 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggagg 105 |||||| |||| || ||||||||||||||||| || || |||||||| Sbjct: 30287896 ccgccctcgccttctagtgacacctctccgacaacgccaggtggagg 30287942 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 68 ccgtccagtgacacctctccgaccacccctggtggaggct 107 ||||||||||||||||| |||| ||| || ||||| |||| Sbjct: 30287671 ccgtccagtgacacctcgccgagcactccgggtggcggct 30287710
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0042A10 Length = 146840 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||||||||||| |||| ||||||||||||||| || |||||| |||||||||||||| Sbjct: 76521 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 76580 Query: 119 actccgtccagtggc 133 || ||||||| |||| Sbjct: 76581 acgccgtccattggc 76595 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||||||||||| ||| || |||||||| || ||||||||||||||||||||| Sbjct: 76674 ccgccctcgccgtccagtggcacgtccccgaccacgccaggtggaggctactacccgccc 76733 Query: 119 ac 120 || Sbjct: 76734 ac 76735 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||||||||||| |||| ||||||||||| ||| || || ||| |||||||||||||| Sbjct: 76521 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 76580 Query: 335 actccgtcca 344 || ||||||| Sbjct: 76581 acgccgtcca 76590 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||| ||||||||||| || ||||| || || |||||||| |||||||||||| Sbjct: 77067 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 77126 Query: 119 actccgtcca 128 || ||||||| Sbjct: 77127 acgccgtcca 77136 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccga 305 |||||||||||| |||||||||||||||||||||||| Sbjct: 76131 gacactccgccctcgccgtccagtgacacctctccga 76167 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactac 328 ||||| |||||| |||||||||||| ||| || |||| ||| || || |||||||||||| Sbjct: 76668 gacacgccgccctcgccgtccagtggcacgtccccgaccacgccaggtggaggctactac 76727 Query: 329 ccgcccac 336 |||||||| Sbjct: 76728 ccgcccac 76735 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggagg 105 |||||| ||||||||||||||||||||||||| || || |||||||| Sbjct: 76137 ccgccctcgccgtccagtgacacctctccgacaacgccgggtggagg 76183 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||| |||| ||||||||||| || |||| || || || ||||| |||||||||||| Sbjct: 77067 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 77126 Query: 335 actccgtccagcggcac 351 || ||||||| |||||| Sbjct: 77127 acgccgtccatcggcac 77143 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 405 cctctccgaccacccctggcggaggctactacccgcccactccgtcca 452 ||||||||||||| || || ||| |||||||||||||||| ||||||| Sbjct: 76543 cctctccgaccacaccgggtggaagctactacccgcccacgccgtcca 76590 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggagg 105 ||||||||||||||||||||||||| || || |||||||| Sbjct: 76300 cgccgtccagtgacacctctccgacaacgccgggtggagg 76339 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggaggct 107 |||||||||| ||||||||||||||||| || || ||||||| Sbjct: 76609 cgccgtccagcgacacctctccgaccacaccgggcggaggct 76650 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccgaacacccctggcggaggct 323 |||||||||| ||||||||||||| ||| || |||||||||| Sbjct: 76609 cgccgtccagcgacacctctccgaccacaccgggcggaggct 76650 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 74 agtgacacctctccgaccacccctggtggaggctactacccgccc 118 ||||||||||| ||||| || |||||||| ||| ||||||||||| Sbjct: 76923 agtgacacctccccgacaacacctggtggcggcaactacccgccc 76967 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccga 305 |||||||||||||||||||||||| Sbjct: 76300 cgccgtccagtgacacctctccga 76323 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 425 ggaggctactacccgcccactccgtccagcggcac 459 ||||| |||||||||||||| ||||||| |||||| Sbjct: 77109 ggagggtactacccgcccacgccgtccatcggcac 77143 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 410 ccgaccacccctggcggaggctactacccgcccac 444 |||||||| || || |||||||||||||||||||| Sbjct: 76701 ccgaccacgccaggtggaggctactacccgcccac 76735 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggagg 105 |||||| |||| || ||||||||||||||||| || || |||||||| Sbjct: 76215 ccgccctcgccttctagtgacacctctccgacaacgccaggtggagg 76261 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 68 ccgtccagtgacacctctccgaccacccctggtggaggct 107 ||||||||||||||||| |||| ||| || ||||| |||| Sbjct: 75990 ccgtccagtgacacctcgccgagcactccgggtggcggct 76029
>dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E12, full insert sequence Length = 2368 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||||||||||| |||| ||||||||||||||| || |||||| |||||||||||||| Sbjct: 895 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 954 Query: 119 actccgtccagtggc 133 || ||||||| |||| Sbjct: 955 acgccgtccattggc 969 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||||||||||| ||| || |||||||| || ||||||||||||||||||||| Sbjct: 1048 ccgccctcgccgtccagtggcacgtccccgaccacgccaggtggaggctactacccgccc 1107 Query: 119 ac 120 || Sbjct: 1108 ac 1109 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||||||||||| |||| ||||||||||| ||| || || ||| |||||||||||||| Sbjct: 895 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 954 Query: 335 actccgtcca 344 || ||||||| Sbjct: 955 acgccgtcca 964 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||| ||||||||||| || ||||| || || |||||||| |||||||||||| Sbjct: 1441 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 1500 Query: 119 actccgtcca 128 || ||||||| Sbjct: 1501 acgccgtcca 1510 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccga 305 |||||||||||| |||||||||||||||||||||||| Sbjct: 505 gacactccgccctcgccgtccagtgacacctctccga 541 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactac 328 ||||| |||||| |||||||||||| ||| || |||| ||| || || |||||||||||| Sbjct: 1042 gacacgccgccctcgccgtccagtggcacgtccccgaccacgccaggtggaggctactac 1101 Query: 329 ccgcccac 336 |||||||| Sbjct: 1102 ccgcccac 1109 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggagg 105 |||||| ||||||||||||||||||||||||| || || |||||||| Sbjct: 511 ccgccctcgccgtccagtgacacctctccgacaacgccgggtggagg 557 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||| |||| ||||||||||| || |||| || || || ||||| |||||||||||| Sbjct: 1441 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 1500 Query: 335 actccgtccagcggcac 351 || ||||||| |||||| Sbjct: 1501 acgccgtccatcggcac 1517 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 405 cctctccgaccacccctggcggaggctactacccgcccactccgtcca 452 ||||||||||||| || || ||| |||||||||||||||| ||||||| Sbjct: 917 cctctccgaccacaccgggtggaagctactacccgcccacgccgtcca 964 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggagg 105 ||||||||||||||||||||||||| || || |||||||| Sbjct: 674 cgccgtccagtgacacctctccgacaacgccgggtggagg 713 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggaggct 107 |||||||||| ||||||||||||||||| || || ||||||| Sbjct: 983 cgccgtccagcgacacctctccgaccacaccgggcggaggct 1024 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccgaacacccctggcggaggct 323 |||||||||| ||||||||||||| ||| || |||||||||| Sbjct: 983 cgccgtccagcgacacctctccgaccacaccgggcggaggct 1024 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 74 agtgacacctctccgaccacccctggtggaggctactacccgccc 118 ||||||||||| ||||| || |||||||| ||| ||||||||||| Sbjct: 1297 agtgacacctccccgacaacacctggtggcggcaactacccgccc 1341 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccga 305 |||||||||||||||||||||||| Sbjct: 674 cgccgtccagtgacacctctccga 697 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 425 ggaggctactacccgcccactccgtccagcggcac 459 ||||| |||||||||||||| ||||||| |||||| Sbjct: 1483 ggagggtactacccgcccacgccgtccatcggcac 1517 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 410 ccgaccacccctggcggaggctactacccgcccac 444 |||||||| || || |||||||||||||||||||| Sbjct: 1075 ccgaccacgccaggtggaggctactacccgcccac 1109 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggagg 105 |||||| |||| || ||||||||||||||||| || || |||||||| Sbjct: 589 ccgccctcgccttctagtgacacctctccgacaacgccaggtggagg 635 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 68 ccgtccagtgacacctctccgaccacccctggtggaggct 107 ||||||||||||||||| |||| ||| || ||||| |||| Sbjct: 364 ccgtccagtgacacctcgccgagcactccgggtggcggct 403
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||||||||||| |||| ||||||||||||||| || |||||| |||||||||||||| Sbjct: 1990143 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 1990202 Query: 119 actccgtccagtggc 133 || ||||||| |||| Sbjct: 1990203 acgccgtccattggc 1990217 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||||||||||| |||| ||||||||||| ||| || || ||| |||||||||||||| Sbjct: 1990143 ccgcccgcgccgtcgagtggcacctctccgaccacaccgggtggaagctactacccgccc 1990202 Query: 335 actccgtcca 344 || ||||||| Sbjct: 1990203 acgccgtcca 1990212 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 67 gccgtccagtgacacctctccgaccacccctggtggaggctactacccgcccac 120 ||||||||||| ||| || |||||||| || ||||||||||||||||||||||| Sbjct: 1990303 gccgtccagtggcacgtccccgaccacgccaggtggaggctactacccgcccac 1990356 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 59 ccgcccgcgccgtccagtgacacctctccgaccacccctggtggaggctactacccgccc 118 |||||| |||| ||||||||||| || ||||| || || |||||||| |||||||||||| Sbjct: 1990688 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 1990747 Query: 119 actccgtcca 128 | ||||||| Sbjct: 1990748 aagccgtcca 1990757 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 269 gacactccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactac 328 ||||| |||||| ||||||||||| ||| || |||| ||| || || |||||||||||| Sbjct: 1990289 gacacgccgcccttgccgtccagtggcacgtccccgaccacgccaggtggaggctactac 1990348 Query: 329 ccgcccac 336 |||||||| Sbjct: 1990349 ccgcccac 1990356 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 405 cctctccgaccacccctggcggaggctactacccgcccactccgtcca 452 ||||||||||||| || || ||| |||||||||||||||| ||||||| Sbjct: 1990165 cctctccgaccacaccgggtggaagctactacccgcccacgccgtcca 1990212 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 282 cgccgtccagtgacacctctccgaacacccctggcggaggct 323 |||||||||| ||||||||||||| ||| || |||||||||| Sbjct: 1990231 cgccgtccagcgacacctctccgaccacaccgggcggaggct 1990272 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 66 cgccgtccagtgacacctctccgaccacccctggtggaggct 107 |||||||||| ||||||||||||||||| || || ||||||| Sbjct: 1990231 cgccgtccagcgacacctctccgaccacaccgggcggaggct 1990272 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 275 ccgcccgcgccgtccagtgacacctctccgaacacccctggcggaggctactacccgccc 334 |||||| |||| ||||||||||| || |||| || || || ||||| |||||||||||| Sbjct: 1990688 ccgccctcgccatccagtgacacttccccgacaacaccgggtggagggtactacccgccc 1990747 Query: 335 actccgtccagcggcac 351 | ||||||| |||||| Sbjct: 1990748 aagccgtccatcggcac 1990764 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 74 agtgacacctctccgaccacccctggtggaggctactacccgccc 118 ||||||||||| ||||| || |||||||| ||| ||||||||||| Sbjct: 1990544 agtgacacctccccgacgacacctggtggcggcaactacccgccc 1990588 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 410 ccgaccacccctggcggaggctactacccgcccac 444 |||||||| || || |||||||||||||||||||| Sbjct: 1990322 ccgaccacgccaggtggaggctactacccgcccac 1990356
>gb|AE004480.1| Pseudomonas aeruginosa PAO1, section 41 of 529 of the complete genome Length = 10910 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/32 (93%), Gaps = 2/32 (6%) Strand = Plus / Plus Query: 377 aactgcccgccctcaccgtc--cgccggcgcc 406 |||||||||||||||||||| |||||||||| Sbjct: 7257 aactgcccgccctcaccgtcagcgccggcgcc 7288
>ref|XM_464563.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1929 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ccggcgcctctccgaccacc 418 |||||||||||||||||||| Sbjct: 1032 ccggcgcctctccgaccacc 1013
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aacccgccctcgccgtcgac 21 |||||||||||||||||||| Sbjct: 77519 aacccgccctcgccgtcgac 77500
>gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complete sequence Length = 222605 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ggcgaggactccccgcccgc 66 |||||||||||||||||||| Sbjct: 124662 ggcgaggactccccgcccgc 124643
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccggcgcctctccgaccacc 418 |||||||||||||||||||| Sbjct: 5931434 ccggcgcctctccgaccacc 5931453
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ttacccgccctcgccgtcga 236 |||||||||||||||||||| Sbjct: 4407442 ttacccgccctcgccgtcga 4407423
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccggcgcctctccgaccacc 418 |||||||||||||||||||| Sbjct: 109655 ccggcgcctctccgaccacc 109674
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccggcgcctctccgaccacc 418 |||||||||||||||||||| Sbjct: 161236 ccggcgcctctccgaccacc 161255
>dbj|AK067907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127I02, full insert sequence Length = 1929 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ccggcgcctctccgaccacc 418 |||||||||||||||||||| Sbjct: 1032 ccggcgcctctccgaccacc 1013
>emb|AL591703.14| Mouse DNA sequence from clone RP23-448P12 on chromosome 2, complete sequence Length = 89080 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ggcgcctctccgaccacccc 420 |||||||||||||||||||| Sbjct: 44687 ggcgcctctccgaccacccc 44706 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,444,968 Number of Sequences: 3902068 Number of extensions: 2444968 Number of successful extensions: 48612 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48069 Number of HSP's gapped (non-prelim): 543 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
