ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast44d01 |
|---|---|
| Clone Library Name | barley_pub |
>ANTA_GENTR (Q9ZWR8) Anthocyanin 5-aromatic acyltransferase (EC 2.3.1.153)| (5AT) Length = 469 Score = 52.0 bits (123), Expect = 3e-07 Identities = 31/88 (35%), Positives = 49/88 (55%) Frame = +3 Query: 147 LNLVTVMEQFHVSPSPSPPAEMPRALPLTFFDLAFWDVPPVQRLFFYDNADLLGAPEFLL 326 + +V V+E+ V+P PS ++ +LP+TFFD+ + + +Q L FYD FL Sbjct: 4 IQMVKVLEKCQVTP-PSDTTDVELSLPVTFFDIPWLHLNKMQSLLFYDFP--YPRTHFLD 60 Query: 327 HELPLFKKSLAAALHHFYPLAGTLVRSI 410 +P K SL+ L H+ PL+G L+ I Sbjct: 61 TVIPNLKASLSLTLKHYVPLSGNLLMPI 88
>SALAT_PAPSO (Q94FT4) Salutaridinol 7-O-acetyltransferase (EC 2.3.1.150) (salAT)| Length = 474 Score = 32.3 bits (72), Expect = 0.27 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Frame = +3 Query: 156 VTVMEQFHVSPSPSPPAEMPRALPLTFFDLAFWDVPPVQRLFFYDNADLLGAPEFLLHE- 332 V V+ + + P+ P+++ + L+ D F V + FY H+ Sbjct: 9 VEVISKETIKPTTPTPSQL-KNFNLSLLDQCFPLYYYVPIILFYPATAANSTGSSNHHDD 67 Query: 333 LPLFKKSLAAALHHFYPLAGTLVRSI 410 L L K SL+ L HFYP+AG ++ +I Sbjct: 68 LDLLKSSLSKTLVHFYPMAGRMIDNI 93
>FBLI1_HUMAN (Q8WUP2) Filamin-binding LIM protein 1 (Filamin-binding LIM protein| 1) (FBLP-1) (Mitogen-inducible 2-interacting protein) (MIG2-interacting protein) (Migfilin) Length = 373 Score = 32.0 bits (71), Expect = 0.36 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%) Frame = +3 Query: 105 PESIVRSTAMAPGPL--NLVTVMEQFHVSPSPSP---PAEMPRALP 227 P ++ S AP P+ +L+ +EQ H+SP P P PAE P P Sbjct: 111 PPVLLPSEEEAPAPMGASLIADLEQLHLSPPPPPPQAPAEGPSVQP 156
>FBLI1_PONPY (Q5REN1) Filamin-binding LIM protein 1| Length = 375 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = +3 Query: 105 PESIVRSTAMAPGPL--NLVTVMEQFHVSPS-PSPPAEMPRALP 227 P ++ S AP P+ +L+ +EQ H+SP P PP + P P Sbjct: 111 PPVLLPSEEEAPAPMGASLIADLEQLHLSPPLPPPPPQAPAERP 154
>YAEF_ECOLI (P37056) Hypothetical lipoprotein yaeF precursor| Length = 274 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%) Frame = -2 Query: 256 SQNARSKKVSGSARG-ISAGGDGDGETWNCSMTVT 155 S++ R + VSG A+ +S+ G+GD ++W CS VT Sbjct: 178 SEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVT 212
>NIT2_NEUCR (P19212) Nitrogen catabolic enzyme regulatory protein| Length = 1036 Score = 29.3 bits (64), Expect = 2.3 Identities = 22/65 (33%), Positives = 31/65 (47%) Frame = +3 Query: 72 SFRLARSRKGKPESIVRSTAMAPGPLNLVTVMEQFHVSPSPSPPAEMPRALPLTFFDLAF 251 SFR + RKGK + TA PG + E+ S S SPPA++ R+ L+ + Sbjct: 658 SFRQSDLRKGK----MSRTASTPGLSARMNPFERLAQSASHSPPADVGRSSGLSSVPASR 713 Query: 252 WDVPP 266 PP Sbjct: 714 PSSPP 718
>GLI3_XENLA (Q91660) Zinc finger protein GLI3 (Neural-specific DNA-binding| protein xGLI3) (xGLI-3) Length = 1569 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = +3 Query: 138 PGPLNLVTVMEQFHVSPSPSPPAEMPRALPL--TFFDLAFWDVPP 266 P P++ ++H P+P PP +P AL T+ DL F+ + P Sbjct: 135 PVPIDARHHEGRYHYEPTPIPPLHVPTALASSPTYPDLPFFRISP 179
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 69 FSFRLARSRKGKPESIVRSTAMAPGPLNLVTVMEQFHVSPSPSPPAEMPRA 221 +S+ + S P S S +PG + E +PSP+P ++MPR+ Sbjct: 1469 YSYFASSSPPLSPSSPSESPTFSPGKMGPRATAEFSTQTPSPAPASDMPRS 1519
>YR705_MIMIV (Q5UNW3) Hypothetical protein R705| Length = 313 Score = 28.9 bits (63), Expect = 3.0 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = -2 Query: 367 SAAARDFLNRGSSWRRNSGAPRRSALS*KKRRCTGGTSQNARSKKVSGSARGISAGGDG 191 S+ ++ + GSS R+ + +S S R T G S N+RS SGS+ S G Sbjct: 243 SSGSKTSRSSGSSRSRSGSSGSKSGRSRNSRSGTSGRSSNSRSGSRSGSSSRSSNSRSG 301
>TAB2_BRARE (Q5RFW2) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 2 homolog Length = 711 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +3 Query: 87 RSRKGKPESIVRSTAMAPGPLNLVTVMEQFHVSPSPSPPAEMPRALPL 230 R G S + +++ GPLN+ + + +F+ +PS P P +L + Sbjct: 86 RDAVGMNGSRTLAPSVSDGPLNVPSALSEFYQPETPSVPTHTPASLSM 133
>GLI3_MOUSE (Q61602) Zinc finger protein GLI3| Length = 1596 Score = 28.9 bits (63), Expect = 3.0 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = +3 Query: 138 PGPLNLVTVMEQFHVSPSPSPPAEMPRALPL--TFFDLAFWDVPP 266 P P++ ++H PSP PP +P AL T+ DL F + P Sbjct: 134 PVPIDARHHEGRYHYDPSPIPPLHVPSALSSSPTYPDLPFIRISP 178
>ENDR_BOVIN (P07106) Endozepine-related protein precursor (Membrane-associated| diazepam-binding inhibitor) (MA-DBI) Length = 533 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = -2 Query: 337 GSSWRRNSGAPRRSALS*KKRRCTG-GTSQNARSKKVSGSARGISAGGDGDGETW 176 G NSGAP R + + + + R + +S ++G G GDGE W Sbjct: 382 GEDGGSNSGAPHREKRAGESEEFSNIRRGRGHRMQHLSEGSKGRQVGSGGDGERW 436
>ENV_SIVML (P11267) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Coat protein GP32; Putative protein ENV-EXTN] Length = 880 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/82 (25%), Positives = 33/82 (40%) Frame = -2 Query: 280 KRRCTGGTSQNARSKKVSGSARGISAGGDGDGETWNCSMTVTRLSGPGAIAVDLTIDSGL 101 KR TGGTS+N R V G ++ G S GA+ VD+T S Sbjct: 515 KRYTTGGTSRNKRGVFVLGFLGFLATAG----------------SAIGAVVVDVTAQSRT 558 Query: 100 PFLDLARRNENFAGIVSSERTL 35 + ++ + +V ++ L Sbjct: 559 LLAGIVQQQQQLLDVVKRQQEL 580
>SYI_LEIXX (Q6AFZ0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1119 Score = 28.5 bits (62), Expect = 4.0 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 9/66 (13%) Frame = +3 Query: 186 PSPSPPAEMPRALPLTFFD---------LAFWDVPPVQRLFFYDNADLLGAPEFLLHELP 338 P P+P + P A P+T LAFWD DN D GAPE++ ++ P Sbjct: 27 PLPAPDGQEPEAQPVTPSPVFPEIEEDVLAFWDRDGTFHASI-DNRD--GAPEWVFYDGP 83 Query: 339 LFKKSL 356 F L Sbjct: 84 PFANGL 89
>RW1_MOUSE (O70472) RW1 protein| Length = 1829 Score = 28.5 bits (62), Expect = 4.0 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Frame = +3 Query: 60 PAKFSFRLARSRKGKPES---IVRSTAMAPGPLNLVTVMEQFHVSPSPSPPAEMPRALPL 230 P++FS ++ K K S I + G L FH+ SP+ P E P L Sbjct: 351 PSQFSGKITVKAKEKSYSKLEIPYQAEVLDGYLGFDHAATLFHIQDSPADPVERPIYLTN 410 Query: 231 TF-FDLAFWDV--PPVQRLFF 284 TF F + DV P R+ F Sbjct: 411 TFSFAILIHDVLLPEEARIMF 431
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/64 (31%), Positives = 27/64 (42%) Frame = +3 Query: 78 RLARSRKGKPESIVRSTAMAPGPLNLVTVMEQFHVSPSPSPPAEMPRALPLTFFDLAFWD 257 R AR+ K P S++ +A P P T H + SP PP+ P + W Sbjct: 3583 RAARNAKEHP-SLLPHSACFPDPSTASTSQSAAHSNDSPPPPSAAPSSSASPHASRKSW- 3640 Query: 258 VPPV 269 PPV Sbjct: 3641 -PPV 3643
>HCFC1_MESAU (P51611) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory| protein) (VCAF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF Length = 2090 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +3 Query: 57 IPAKFSFRLARSRKGKPESIVRSTAMAPGPLNLVTVMEQFHVSPSPSPP 203 +PA +L S GKP +I+ +T A G + T++ VSPS + P Sbjct: 716 LPAGTILKLVTSADGKPTTII-TTTQASGAGSKPTILGISSVSPSTTKP 763
>FRQ_SORFI (Q09033) Frequency clock protein| Length = 997 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = -2 Query: 283 KKRRCTGGTSQNARSKKVSGSARGISAGGDGDGETWNCSMTVTRLSGPGAIAVD 122 K R G TS + + ++AGGDG+G + TV S PG IA D Sbjct: 386 KIRSSKGATSASNSGGDQTEVGGTVTAGGDGNG---SGGRTVNNTSPPGVIAPD 436
>SYR_METMA (Q8PX74) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 569 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/42 (28%), Positives = 24/42 (57%) Frame = +3 Query: 255 DVPPVQRLFFYDNADLLGAPEFLLHELPLFKKSLAAALHHFY 380 ++ ++++ +D+ LGA E H L ++ + LA A + FY Sbjct: 485 EIDLIKKMAMFDSVIDLGARELKPHVLAIYARELADAFNQFY 526
>LRFN4_HUMAN (Q6PJG9) Leucine-rich repeat and fibronectin type-III| domain-containing protein 4 precursor Length = 635 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 144 PLNLVTVMEQFHVSPSPSPPAEMPRALP 227 PL L V Q + PSP+P A PR+ P Sbjct: 550 PLKLSHVQSQTNGGPSPTPKAHPPRSPP 577
>YFHG_SHIFL (P0AD46) Hypothetical protein yfhG| Length = 237 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -3 Query: 147 VARAPSRST*LSIPAC---LFSIWRGGTKTSLGLFPQRERFSLIIQPGSS 7 VAR + ST IPA L+ +WR G L L +R+R+S + Q S Sbjct: 125 VARIEALST--EIPAQVRPLYQLWRDGQALQLQLAEERQRYSKLQQSSDS 172
>YFHG_ECOLI (P0AD44) Hypothetical protein yfhG| Length = 237 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -3 Query: 147 VARAPSRST*LSIPAC---LFSIWRGGTKTSLGLFPQRERFSLIIQPGSS 7 VAR + ST IPA L+ +WR G L L +R+R+S + Q S Sbjct: 125 VARIEALST--EIPAQVRPLYQLWRDGQALQLQLAEERQRYSKLQQSSDS 172
>YFHG_ECO57 (P0AD45) Hypothetical protein yfhG| Length = 237 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -3 Query: 147 VARAPSRST*LSIPAC---LFSIWRGGTKTSLGLFPQRERFSLIIQPGSS 7 VAR + ST IPA L+ +WR G L L +R+R+S + Q S Sbjct: 125 VARIEALST--EIPAQVRPLYQLWRDGQALQLQLAEERQRYSKLQQSSDS 172
>HCFC1_MOUSE (Q61191) Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF| N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-termi Length = 2045 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +3 Query: 57 IPAKFSFRLARSRKGKPESIVRSTAMAPGPLNLVTVMEQFHVSPSPSPP 203 +PA +L S GKP +I+ +T A G T++ VSPS + P Sbjct: 716 LPAGTILKLVTSADGKPTTII-TTTQASGAGTKPTILGISSVSPSTTKP 763
>HCFC1_HUMAN (P51610) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory| protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain Length = 2035 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +3 Query: 57 IPAKFSFRLARSRKGKPESIVRSTAMAPGPLNLVTVMEQFHVSPSPSPP 203 +PA +L S GKP +I+ +T A G T++ VSPS + P Sbjct: 716 LPAGTILKLVTSADGKPTTII-TTTQASGAGTKPTILGISSVSPSTTKP 763
>ILV2_ORYSA (Q7XKQ8) Probable acetolactate synthase 2, chloroplast precursor| (EC 2.2.1.6) (Acetohydroxy-acid synthase 2) Length = 663 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +3 Query: 54 TIPAKFSFRLAR-SRKGKPESIVRSTAMAPGPLNL-VTVMEQFHVSP 188 TI F AR +RKG+ + V APGP L V V Q HV P Sbjct: 596 TIAGGFGIPAARVTRKGEVRAAVEEMMAAPGPYLLDVVVPHQEHVLP 642
>Y4762_ARATH (Q8RY73) Protein At4g17620, chloroplast precursor| Length = 544 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/50 (26%), Positives = 24/50 (48%) Frame = -2 Query: 283 KKRRCTGGTSQNARSKKVSGSARGISAGGDGDGETWNCSMTVTRLSGPGA 134 + + + G + ++ S S S+ +AGGDG+G+ SG G+ Sbjct: 26 RSKSSSSGNASSSSSSSSSSSSSSSAAGGDGEGDGGGADSGSASDSGSGS 75
>HMOC_DROME (P22810) Homeotic protein ocelliless (Protein orthodenticle)| Length = 671 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/74 (24%), Positives = 27/74 (36%) Frame = -2 Query: 334 SSWRRNSGAPRRSALS*KKRRCTGGTSQNARSKKVSGSARGISAGGDGDGETWNCSMTVT 155 SS S + + S + +GG + N S+K S GG G N + Sbjct: 159 SSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNSQSSQQGGGSSGGNNSNNNSAAA 218 Query: 154 RLSGPGAIAVDLTI 113 S A+A +I Sbjct: 219 AASAAAAVAAAQSI 232
>GLI3_PANTR (Q5IS56) Zinc finger protein GLI3| Length = 1580 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +3 Query: 138 PGPLNLVTVMEQFHVSPSPSPPAEMPRALPL--TFFDLAFWDVPP 266 P P++ ++H PSP PP M AL T+ DL F + P Sbjct: 134 PVPIDARHHEGRYHYDPSPIPPLHMTSALSSSPTYPDLPFIRISP 178
>GLI3_HUMAN (P10071) Zinc finger protein GLI3| Length = 1580 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +3 Query: 138 PGPLNLVTVMEQFHVSPSPSPPAEMPRALPL--TFFDLAFWDVPP 266 P P++ ++H PSP PP M AL T+ DL F + P Sbjct: 134 PVPIDARHHEGRYHYDPSPIPPLHMTSALSSSPTYPDLPFIRISP 178
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -2 Query: 331 SWRRNSGAPRRSALS*KKRRCTGGTSQNARSKKVSGSARGISAGGDGDG 185 SW + G PR K + T GT +A + GSA ++GG G G Sbjct: 211 SWPESEGKPRV-----KGSKSTAGTGASAAAAGGGGSAAVTTSGGVGAG 254
>ALR_STRCO (O86786) Alanine racemase (EC 5.1.1.1)| Length = 391 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +2 Query: 161 GHGAVPCLAVAVTTGRDATGAA 226 GHGA+PC AV G G A Sbjct: 51 GHGAIPCARAAVAAGATWLGTA 72
>PJA1_HUMAN (Q8NG27) Ubiquitin protein ligase Praja1 (EC 6.3.2.-) (RING finger| protein 70) Length = 643 Score = 27.3 bits (59), Expect = 8.8 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Frame = -2 Query: 376 KWCSAAARDFLNR-------GSSWRRNSGAPRRSALS*KKRRCTGGTSQNARSKKVSGSA 218 +W +A R + +R G SW G R K TG TS + +G+ Sbjct: 370 EWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTG-TSPGPGASASAGAG 428 Query: 217 RGISAGGDG 191 G SAG +G Sbjct: 429 AGASAGSNG 437
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 27.3 bits (59), Expect = 8.8 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = -1 Query: 254 PECEVEEGERQRPWHLGRW*RRRRDMELLHDRHKVK----WPGRHRGRPDYRFRLAFSRS 87 PEC+ +++P H + RR E +R + + GRHRG D R + SRS Sbjct: 241 PECKAR---KEKPKHEHKSASRREAEEKSRERERGRSSGTHSGRHRGHSDGRSHRSRSRS 297 Query: 86 GEAERKLR 63 ++ R Sbjct: 298 RSPDKSHR 305
>GNDS_RAT (Q03386) Ral guanine nucleotide dissociation stimulator (RalGEF)| (RalGDS) Length = 895 Score = 27.3 bits (59), Expect = 8.8 Identities = 23/73 (31%), Positives = 31/73 (42%) Frame = +3 Query: 132 MAPGPLNLVTVMEQFHVSPSPSPPAEMPRALPLTFFDLAFWDVPPVQRLFFYDNADLLGA 311 +AP P TV + H+ P+P P + + PL P LF D L A Sbjct: 317 LAPAPELDPTVSQSLHLEPAPVPAPALEPSWPLPETTENGLCAKPHLLLFPPD----LVA 372 Query: 312 PEFLLHELPLFKK 350 +F L + LFKK Sbjct: 373 EQFTLMDAELFKK 385
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +3 Query: 90 SRKGKPESIVRSTAMAPGPLNLVTVMEQFHVSPSPSPPAEMPRALP 227 SR +P+ I + A +P P ++ V VS SP P A+ P A P Sbjct: 766 SRTPEPKKIKK--AASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPP 809
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +3 Query: 90 SRKGKPESIVRSTAMAPGPLNLVTVMEQFHVSPSPSPPAEMPRALP 227 SR +P+ I + A +P P ++ V VS SP P A+ P A P Sbjct: 725 SRTPEPKKIKK--AASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPP 768
>RL15_PYRFU (Q8U018) 50S ribosomal protein L15P| Length = 147 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = -1 Query: 212 HLGRW*RRRRDMELLHDRHKVKWPGRHRGRPDYRFRLAFSRSGEAERKLR 63 H G + R M R+K KW + PD+ + FSR E +R++R Sbjct: 25 HRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRPPEVQREVR 74
>RL15_PYRAB (Q9V1V7) 50S ribosomal protein L15P| Length = 147 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = -1 Query: 212 HLGRW*RRRRDMELLHDRHKVKWPGRHRGRPDYRFRLAFSRSGEAERKLR 63 H G + R M R+K KW + PD+ + FSR E +R++R Sbjct: 25 HRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRPPEVQREVR 74
>COAT_NODAV (P12871) Protein alpha [Contains: Coat protein beta (EC 3.4.23.44)| (Nodavirus endopeptidase); Coat protein gamma] Length = 399 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +2 Query: 74 VPPRQIEKRQAGIDSQVDRDGARAT*PCDGHGAVPCLAVAVTTGRDATGAA 226 VPP + QA + + + GAR T G G + +A+ VTT A A Sbjct: 257 VPPANVTNAQASMFTNLTFSGARYT----GLGDMDAIAILVTTPTGAVNTA 303 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,136,371 Number of Sequences: 219361 Number of extensions: 998928 Number of successful extensions: 4003 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 3770 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3994 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
