ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast44c06 |
|---|---|
| Clone Library Name | barley_pub |
>MTNK_BACCR (Q819F1) Methylthioribose kinase (EC 2.7.1.100) (MTR kinase)| Length = 393 Score = 75.9 bits (185), Expect = 4e-14 Identities = 32/73 (43%), Positives = 51/73 (69%) Frame = +2 Query: 188 EVGDGNLNFVYIVTSDAGSVVVKQALPYIRCVGDSWPMTRERAYFEASALREHGRLCPDH 367 E+GDGNLN+V+ + S+++KQALPY + VG+SWP++ +RA E+ AL+ + PD+ Sbjct: 31 EIGDGNLNYVFKLDDGEKSIIIKQALPYAKVVGESWPLSIKRATIESKALQIFAQYVPDY 90 Query: 368 VPEVYHFDRAMSL 406 VP VY D +++ Sbjct: 91 VPVVYSHDEELAI 103
>MTNK_BACAN (Q81MJ5) Methylthioribose kinase (EC 2.7.1.100) (MTR kinase)| Length = 393 Score = 74.3 bits (181), Expect = 1e-13 Identities = 31/73 (42%), Positives = 51/73 (69%) Frame = +2 Query: 188 EVGDGNLNFVYIVTSDAGSVVVKQALPYIRCVGDSWPMTRERAYFEASALREHGRLCPDH 367 E+GDGNLN+V+ + S+++KQALPY + VG+SWP++ +RA E+ AL+ + P++ Sbjct: 31 EIGDGNLNYVFKLDDGEKSIIIKQALPYAKVVGESWPLSIKRATIESKALQIFAKYVPEY 90 Query: 368 VPEVYHFDRAMSL 406 VP VY D +++ Sbjct: 91 VPVVYSHDEELAV 103
>MTNK_BACSU (O31663) Methylthioribose kinase (EC 2.7.1.100) (MTR kinase)| Length = 397 Score = 73.6 bits (179), Expect = 2e-13 Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 2/111 (1%) Frame = +2 Query: 89 FRPLDEASLVAYIRATPALAASLGGRVDALSVKEVGDGNLNFVYIVTSDAG--SVVVKQA 262 + L+E+S VA A+ L L+ +E+GDGNLN+V+ + ++++KQA Sbjct: 9 YETLNESSAVAL-----AVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQA 63 Query: 263 LPYIRCVGDSWPMTRERAYFEASALREHGRLCPDHVPEVYHFDRAMSLIGM 415 +PY + VG+SWP+T +RA E+SAL G P VP V++ D M++ M Sbjct: 64 VPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTEMAVTVM 114
>SVIL_MOUSE (Q8K4L3) Supervillin (Archvillin) (p205/p250)| Length = 2170 Score = 31.6 bits (70), Expect = 0.83 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Frame = -3 Query: 255 LTTTEP----ASDVTM*TKLRLPSPTSLTERASTRPPRLAASAGVARM*ATREASSSGRN 88 + TEP S VT RLPSPT R+S +P RL ASA + R+ ++ GR Sbjct: 705 IAATEPIPASCSGVTHPVTARLPSPT--VARSSVQPARLQASAHQKAL--ARDQANEGRE 760 Query: 87 SS 82 S+ Sbjct: 761 SA 762
>SYT_LEIXX (Q6AFC3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 695 Score = 31.2 bits (69), Expect = 1.1 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Frame = +2 Query: 26 RRFPTRSSVPAQLAAMAAGDEFRPLDEASLVAYIRATPALAASLGGRVDALSVKEVGDGN 205 +RF R + A AG+ ++ L+ ++ + A +A +GG EVG G Sbjct: 147 QRFVRRVVTDEEARAELAGEPYK----LELIG-LKGSDAESAEVGGEESV----EVGSGE 197 Query: 206 LNFVYIVTSDAGSVVVKQA-----LPYIRCVGDSWPMTRERAYF 322 L V G + K LP R +G+ W +TR A + Sbjct: 198 LTIYDNVDPKTGETIWKDLCRGPHLPNTRMIGNGWALTRVAAAY 241
>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (B3RP) Length = 1237 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = -2 Query: 373 RDVVR--AEAAVLPQRRRLEVGPLPRHRPRVPHAP 275 R +VR A+ + R E GP PR RPR PH P Sbjct: 282 RHLVRKNAKGSAQSSREGREPGPTPRSRPRAPHKP 316
>B3A2_RAT (P23347) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (B3RP) Length = 1234 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = -2 Query: 373 RDVVR--AEAAVLPQRRRLEVGPLPRHRPRVPHAP 275 R +VR A+ + R E GP PR RPR PH P Sbjct: 283 RHLVRKNAKGSTQAAREGREPGPTPRARPRAPHKP 317
>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (B3RP) Length = 1237 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = -2 Query: 373 RDVVR--AEAAVLPQRRRLEVGPLPRHRPRVPHAP 275 R +VR A+ + R E GP PR RPR PH P Sbjct: 282 RHLVRKNAKGSTQAAREGREPGPTPRARPRAPHKP 316
>EGR1_BRARE (P26632) Early growth response protein 1 (EGR-1) (Krox24)| Length = 511 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -3 Query: 294 HESPTHRMYGSACLTTTEPASDVTM*TKLRLPSPTSLTERASTRP 160 + SP H Y S + TT P++ T T++ PTS+ + P Sbjct: 447 YSSPVHTSYPSPSIATTYPSATSTFQTQVATSFPTSVASNIYSSP 491
>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (BND3L) Length = 1241 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = -2 Query: 373 RDVVRAEAAVLPQ--RRRLEVGPLPRHRPRVPHAP 275 R +VR A Q R E GP PR RPR PH P Sbjct: 286 RHLVRKNAKGSTQSGREGREPGPTPRARPRAPHKP 320
>B3A2_CAVPO (Q9Z0S8) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) Length = 1238 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = -2 Query: 373 RDVVRAEAAVLPQRRR--LEVGPLPRHRPRVPHAP 275 R +VR A Q R E GP PR RPR PH P Sbjct: 282 RHLVRKNAKGSSQSSREGREPGPTPRTRPRAPHKP 316
>RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1195 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = +2 Query: 296 PMTRERAYFEASALR--EHGRLCPDHVPE 376 P+TR + +FEA L + GR+CP+ PE Sbjct: 478 PLTRTQPHFEARDLHPTQWGRICPNETPE 506
>RPOB2_HALSA (P15352) DNA-directed RNA polymerase subunit B'' (EC 2.7.7.6)| Length = 523 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 8/45 (17%) Frame = +2 Query: 296 PMTRERAYFEASALR--EHGRLCPDHVPE------VYHFDRAMSL 406 P++R + +FEA L + GR+CP PE V +F +AM L Sbjct: 442 PLSRSQPHFEARDLHATQWGRICPSETPEGPNCGLVKNFAQAMEL 486
>ATG26_CRYNE (Q5KK25) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)| (Autophagy-related protein 26) Length = 1585 Score = 29.3 bits (64), Expect = 4.1 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +2 Query: 263 LPYIRCVGDSWPMTRERAYFEASALREHGRLCPDHVPEVYHFDR 394 +PY R + P TR RAY A A+ EHGR P + FD+ Sbjct: 1154 IPYYRAF--TMPWTRTRAYPHAFAVPEHGRGGPYNYMTYTMFDQ 1195
>DP87_DICDI (Q04503) Prespore protein DP87 precursor| Length = 555 Score = 29.3 bits (64), Expect = 4.1 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = -3 Query: 201 PSPTSLTERASTRPPRLAASAGV---ARM*ATREASSSGRNSSPAAMAASWAGTDE 43 PS ++ + AS+ P AAS+ A A ASSS +SS ++ AAS A + E Sbjct: 491 PSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAASSAASSE 546
>RPOB_THECE (P31814) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1122 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = +2 Query: 296 PMTRERAYFEASALR--EHGRLCPDHVPE 376 P++RE+ +FEA L GR+CP PE Sbjct: 444 PLSREQPHFEARDLHGTHWGRICPTETPE 472
>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 513 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -2 Query: 406 ERHGAVEVVDLRDVVRAEAAVLPQRRRLEVGPLPRHRPRVPHAPDV 269 + GA+++ L++V+ EAA + R GPLP + R P D+ Sbjct: 195 DHQGALQI--LKEVINEEAAEWDRTHRPPAGPLPAGQLRDPTGSDI 238
>GSK3B_RAT (P18266) Glycogen synthase kinase-3 beta (EC 2.7.11.26) (GSK-3| beta) (Factor A) (FA) Length = 420 Score = 28.5 bits (62), Expect = 7.1 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 19/127 (14%) Frame = +2 Query: 104 EASLVAYIRATPALAASLGGRVDALSVKEVGDGNLNFVY-IVTSDAGSVV-VKQALPYIR 277 + S V + ATP V K +G+G+ VY D+G +V +K+ L R Sbjct: 33 DGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 92 Query: 278 CVG---------DSWPMTRERAYFEASALRE---HGRLCPDHVPE-VY----HFDRAMSL 406 D + R R +F +S ++ + L D+VPE VY H+ RA Sbjct: 93 FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQT 152 Query: 407 IGMRYIK 427 + + Y+K Sbjct: 153 LPVIYVK 159
>GSK3B_MOUSE (Q9WV60) Glycogen synthase kinase-3 beta (EC 2.7.11.26) (GSK-3| beta) Length = 420 Score = 28.5 bits (62), Expect = 7.1 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 19/127 (14%) Frame = +2 Query: 104 EASLVAYIRATPALAASLGGRVDALSVKEVGDGNLNFVY-IVTSDAGSVV-VKQALPYIR 277 + S V + ATP V K +G+G+ VY D+G +V +K+ L R Sbjct: 33 DGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 92 Query: 278 CVG---------DSWPMTRERAYFEASALRE---HGRLCPDHVPE-VY----HFDRAMSL 406 D + R R +F +S ++ + L D+VPE VY H+ RA Sbjct: 93 FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQT 152 Query: 407 IGMRYIK 427 + + Y+K Sbjct: 153 LPVIYVK 159
>GSK3B_HUMAN (P49841) Glycogen synthase kinase-3 beta (EC 2.7.11.26) (GSK-3| beta) Length = 420 Score = 28.5 bits (62), Expect = 7.1 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 19/127 (14%) Frame = +2 Query: 104 EASLVAYIRATPALAASLGGRVDALSVKEVGDGNLNFVY-IVTSDAGSVV-VKQALPYIR 277 + S V + ATP V K +G+G+ VY D+G +V +K+ L R Sbjct: 33 DGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 92 Query: 278 CVG---------DSWPMTRERAYFEASALRE---HGRLCPDHVPE-VY----HFDRAMSL 406 D + R R +F +S ++ + L D+VPE VY H+ RA Sbjct: 93 FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQT 152 Query: 407 IGMRYIK 427 + + Y+K Sbjct: 153 LPVIYVK 159
>Y3649_PSEAE (Q9HXY3) Hypothetical zinc metalloprotease PA3649 (EC 3.4.24.-)| Length = 450 Score = 28.5 bits (62), Expect = 7.1 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Frame = +2 Query: 53 PAQLAAMAAGDEFRPLDEASLVAYIRATPALAASLGGRVDALSVKEVGDGNLNFVYIVTS 232 PAQ A + GD + +D ++ + + ++ A G RV +K + DG + V + + Sbjct: 234 PAQAAGLKLGDRLQSIDGIAVDDWQQVVDSVRARPGQRV---QLKVLRDGEVLDVALELA 290 Query: 233 DAGSVVVKQALPYIRCVGDSWP--MTRERAY 319 G + G WP M RE +Y Sbjct: 291 VRGEGKARSGYMGAGVAGTEWPAEMLREVSY 321
>RPOB_CHLCH (Q3ATP5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1300 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 522 LTRERAGFEVRDVHYTHYGRLCPIETPE 549
>RPOB_SHEVI (Q9KW14) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1343 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 539 LTRERAGFEVRDVHPTHYGRLCPIETPE 566
>RPOB_HAEIN (P43738) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1343 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALRE--HGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 538 LTRERAGFEVRDVHNTHYGRLCPIETPE 565
>RPOB_HAEI8 (Q4QN33) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1343 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALRE--HGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 538 LTRERAGFEVRDVHNTHYGRLCPIETPE 565
>RPOB_CHLTE (Q8KG15) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1303 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 526 LTRERAGFEVRDVHYTHYGRLCPIETPE 553
>RPOB_VIBF1 (Q5E238) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1341 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 537 LTRERAGFEVRDVHATHYGRLCPIETPE 564
>RPOB_VIBCH (Q9KV30) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1341 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 538 LTRERAGFEVRDVHVTHYGRLCPIETPE 565
>RPOB_PHOPR (Q6LLW2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1341 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 538 LTRERAGFEVRDVHATHYGRLCPIETPE 565
>AKL1_YEAST (P38080) Serine/threonine-protein kinase AKL1 (EC 2.7.11.1)| Length = 1108 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = -3 Query: 171 STRPPRLAASAGVARM*ATREASSSGRNSSPAAMAASWAGTDERVGNRR 25 S + PRL + R +T SS GR+ + A+ G+DE + N + Sbjct: 501 SEQSPRLNTQSLPQRQKSTSSYSSGGRSMKSTSYGAATIGSDEALANEK 549
>OVO_DROME (P51521) Protein ovo (Protein shaven baby)| Length = 1351 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = -3 Query: 216 TKLRLPSPTSLTERASTRPPRLAASAGVARM*ATREASSSGRNSSPAAMAAS 61 + + LPSPT+ A+ AA+A + + +SS G NSS ++ +S Sbjct: 992 SNMSLPSPTAAAAAAAAAAAAAAAAAAHLQRPMSSSSSSGGTNSSNSSGGSS 1043
>RPOB_VIBVY (Q7MGR8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1342 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 538 LTRERAGFEVRDVHVTHYGRLCPIETPE 565
>RPOB_VIBVU (Q8DD20) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1342 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 538 LTRERAGFEVRDVHVTHYGRLCPIETPE 565
>RPOB_VIBPA (Q87KQ4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1342 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 538 LTRERAGFEVRDVHVTHYGRLCPIETPE 565
>RPOB_SHEON (Q8EK74) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1345 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 539 LTRERAGFEVRDVHPTHYGRLCPIETPE 566
>RPOB_IDILO (Q5QWA5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1342 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 539 LTRERAGFEVRDVHPTHYGRLCPIETPE 566
>RPOB_HAEDU (Q7VKL7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1342 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 MTRERAYFEASALR--EHGRLCPDHVPE 376 +TRERA FE + +GRLCP PE Sbjct: 538 LTRERAGFEVRDVHPTHYGRLCPIETPE 565
>SYF2_NEUCR (Q7RZK5) Pre-mRNA-splicing factor syf-2| Length = 339 Score = 28.1 bits (61), Expect = 9.2 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Frame = -3 Query: 252 TTTEPASDVTM*TKLRLPSPT--SLTERASTRPPRLAASAGVARM*ATREASSSGRNSSP 79 +TTEP + +K PS T +L +S+ PP L+AS A SSS +S Sbjct: 27 STTEPNNQTVTDSKEE-PSVTEAALATTSSSSPPVLSASETAQPDTAATSQSSSTPPTST 85 Query: 78 AAMAASWAGTDERVGNRRCLHCR 10 +A ++ A ER R L R Sbjct: 86 SAAESAAAKARERAERFRALQAR 108 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,483,125 Number of Sequences: 219361 Number of extensions: 575866 Number of successful extensions: 2548 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 2455 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2544 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
