ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast44c06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474287.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 404 bits (204), Expect = e-110 Identities = 303/336 (90%) Strand = Plus / Plus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 46 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 105 Query: 149 gccagcctcggcggccgcgtcgacgccctctccgtcaaggaggtcggcgacggcaacctc 208 || ||||||||||| || ||||||||||| || |||||||||||||||||||||||||| Sbjct: 106 gcgcgcctcggcggcagcctcgacgccctcaccatcaaggaggtcggcgacggcaacctc 165 Query: 209 aacttcgtctacatcgtcacatccgacgccggctccgtcgtcgtcaagcaggcgctgccg 268 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct: 166 aacttcgtctacatcgtcctctccgacgccggctccgtcgtcatcaagcaggcgctgccg 225 Query: 269 tacatccggtgcgtgggggactcgtggccgatgacgagggagcgggcctacttcgaggcg 328 |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 226 tacatccgctgcgtgggggattcgtggccgatgacgagggagcgcgcctacttcgaggcc 285 Query: 329 tcggcgctgcgggagcacggccgcctctgcccggaccacgtcccggaggtctaccacttc 388 || ||||||| | ||||| || |||||||||||||||| ||||| ||||||||||||||| Sbjct: 286 tccgcgctgcagaagcaccgcggcctctgcccggaccatgtccccgaggtctaccacttc 345 Query: 389 gaccgcgccatgtcgctcatcgggatgcgctacatc 424 ||||| ||||||||||| |||||||||||||||||| Sbjct: 346 gaccgggccatgtcgctgatcgggatgcgctacatc 381
>dbj|AK067649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114G08, full insert sequence Length = 1698 Score = 404 bits (204), Expect = e-110 Identities = 303/336 (90%) Strand = Plus / Plus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 148 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 207 Query: 149 gccagcctcggcggccgcgtcgacgccctctccgtcaaggaggtcggcgacggcaacctc 208 || ||||||||||| || ||||||||||| || |||||||||||||||||||||||||| Sbjct: 208 gcgcgcctcggcggcagcctcgacgccctcaccatcaaggaggtcggcgacggcaacctc 267 Query: 209 aacttcgtctacatcgtcacatccgacgccggctccgtcgtcgtcaagcaggcgctgccg 268 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct: 268 aacttcgtctacatcgtcctctccgacgccggctccgtcgtcatcaagcaggcgctgccg 327 Query: 269 tacatccggtgcgtgggggactcgtggccgatgacgagggagcgggcctacttcgaggcg 328 |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 328 tacatccgctgcgtgggggattcgtggccgatgacgagggagcgcgcctacttcgaggcc 387 Query: 329 tcggcgctgcgggagcacggccgcctctgcccggaccacgtcccggaggtctaccacttc 388 || ||||||| | ||||| || |||||||||||||||| ||||| ||||||||||||||| Sbjct: 388 tccgcgctgcagaagcaccgcggcctctgcccggaccatgtccccgaggtctaccacttc 447 Query: 389 gaccgcgccatgtcgctcatcgggatgcgctacatc 424 ||||| ||||||||||| |||||||||||||||||| Sbjct: 448 gaccgggccatgtcgctgatcgggatgcgctacatc 483
>gb|AY593959.1| Oryza sativa (japonica cultivar-group) methylthioribose kinase (MTK1) mRNA, complete cds Length = 1478 Score = 383 bits (193), Expect = e-103 Identities = 303/339 (89%), Gaps = 3/339 (0%) Strand = Plus / Plus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 46 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 105 Query: 149 gccagcctcggcggccgcgtcgacgccctctccgtcaaggaggtcggcgacggcaacctc 208 || ||||||||||| || ||||||||||| || |||||||||||||||||||||||||| Sbjct: 106 gcgcgcctcggcggcagcctcgacgccctcaccatcaaggaggtcggcgacggcaacctc 165 Query: 209 aacttcgtctacatcgtcacatccgacgccggctccgtcgtcgtcaagcag---gcgctg 265 |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| Sbjct: 166 aacttcgtctacatcgtcctctccgacgccggctccgtcgtcatcaagcagcaggcgctg 225 Query: 266 ccgtacatccggtgcgtgggggactcgtggccgatgacgagggagcgggcctacttcgag 325 ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 226 ccgtacatccgctgcgtgggggattcgtggccgatgacgagggagcgcgcctacttcgag 285 Query: 326 gcgtcggcgctgcgggagcacggccgcctctgcccggaccacgtcccggaggtctaccac 385 || || ||||||| | ||||| || |||||||||||||||| ||||| |||||||||||| Sbjct: 286 gcctccgcgctgcagaagcaccgcggcctctgcccggaccatgtccccgaggtctaccac 345 Query: 386 ttcgaccgcgccatgtcgctcatcgggatgcgctacatc 424 |||||||| ||||||||||| |||||||||||||||||| Sbjct: 346 ttcgaccgggccatgtcgctgatcgggatgcgctacatc 384
>ref|XM_474288.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1284 Score = 365 bits (184), Expect = 8e-98 Identities = 298/336 (88%) Strand = Plus / Plus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 37 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 96 Query: 149 gccagcctcggcggccgcgtcgacgccctctccgtcaaggaggtcggcgacggcaacctc 208 || |||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 97 gcgcgcctcggcggccgcctcgacgccctcaccatcaaggaggtcggcgacggcaacctc 156 Query: 209 aacttcgtctacatcgtcacatccgacgccggctccgtcgtcgtcaagcaggcgctgccg 268 |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| Sbjct: 157 aacttcgtctacatcgtcctctccgacgccggctccctcgtcatcaagcaggcgctgccg 216 Query: 269 tacatccggtgcgtgggggactcgtggccgatgacgagggagcgggcctacttcgaggcg 328 |||||||| | |||||||| || ||||||||| |||||||||| ||||| |||||||| Sbjct: 217 tacatccgcttagtgggggattcatggccgatgtcgagggagcgcgcctatttcgaggcc 276 Query: 329 tcggcgctgcgggagcacggccgcctctgcccggaccacgtcccggaggtctaccacttc 388 || ||||||| | ||||| || ||||||||||||||| ||||| ||||||||||||||| Sbjct: 277 tccgcgctgcagaagcaccgcgccctctgcccggaccatgtccccgaggtctaccacttc 336 Query: 389 gaccgcgccatgtcgctcatcgggatgcgctacatc 424 ||||| |||||||||||||||||||||||||||||| Sbjct: 337 gaccgtgccatgtcgctcatcgggatgcgctacatc 372
>gb|AY104731.1| Zea mays PCO103407 mRNA sequence Length = 1011 Score = 250 bits (126), Expect = 3e-63 Identities = 213/242 (88%) Strand = Plus / Plus Query: 183 tcaaggaggtcggcgacggcaacctcaacttcgtctacatcgtcacatccgacgccggct 242 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 188 tcaaggaggtcggcgacggcaacctcaacttcgtctacatcgtgcagtccgaggccggcg 247 Query: 243 ccgtcgtcgtcaagcaggcgctgccgtacatccggtgcgtgggggactcgtggccgatga 302 || ||||||||||||||||||| |||||| | || ||||||||||| |||||||| |||| Sbjct: 248 ccatcgtcgtcaagcaggcgctcccgtacgtgcgctgcgtgggggattcgtggcccatga 307 Query: 303 cgagggagcgggcctacttcgaggcgtcggcgctgcgggagcacggccgcctctgcccgg 362 || ||||||| |||||||||||||| || |||||||||||||||||||||| ||||||| Sbjct: 308 cgcgggagcgcgcctacttcgaggcctccacgctgcgggagcacggccgcctgtgcccgg 367 Query: 363 accacgtcccggaggtctaccacttcgaccgcgccatgtcgctcatcgggatgcgctaca 422 | ||| ||| ||||| |||||||||||||| || ||||||| || ||||||||||||| Sbjct: 368 agcacacccccgaggtgtaccacttcgaccggaccttgtcgctgatggggatgcgctaca 427 Query: 423 tc 424 || Sbjct: 428 tc 429 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 |||||||||||||||||| | ||||| | ||||||||| ||| || |||||||| ||| Sbjct: 88 ttccgcccgctggacgagtcgtccctgctcgcctacatcaaggccacgccggcgctcgcc 147 Query: 149 gccagcctcggcggc 163 || ||||||||||| Sbjct: 148 tcccgcctcggcggc 162
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence Length = 190432 Score = 230 bits (116), Expect = 3e-57 Identities = 155/168 (92%) Strand = Plus / Minus Query: 257 caggcgctgccgtacatccggtgcgtgggggactcgtggccgatgacgagggagcgggcc 316 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct: 103440 caggcgctgccgtacatccgctgcgtgggggattcgtggccgatgacgagggagcgcgcc 103381 Query: 317 tacttcgaggcgtcggcgctgcgggagcacggccgcctctgcccggaccacgtcccggag 376 ||||||||||| || ||||||| | ||||| || |||||||||||||||| ||||| ||| Sbjct: 103380 tacttcgaggcctccgcgctgcagaagcaccgcggcctctgcccggaccatgtccccgag 103321 Query: 377 gtctaccacttcgaccgcgccatgtcgctcatcgggatgcgctacatc 424 ||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 103320 gtctaccacttcgaccgggccatgtcgctgatcgggatgcgctacatc 103273 Score = 190 bits (96), Expect = 3e-45 Identities = 150/168 (89%) Strand = Plus / Minus Query: 257 caggcgctgccgtacatccggtgcgtgggggactcgtggccgatgacgagggagcgggcc 316 |||||||||||||||||||| | |||||||| || ||||||||| |||||||||| ||| Sbjct: 109250 caggcgctgccgtacatccgcttagtgggggattcatggccgatgtcgagggagcgcgcc 109191 Query: 317 tacttcgaggcgtcggcgctgcgggagcacggccgcctctgcccggaccacgtcccggag 376 || |||||||| || ||||||| | ||||| || ||||||||||||||| ||||| ||| Sbjct: 109190 tatttcgaggcctccgcgctgcagaagcaccgcgccctctgcccggaccatgtccccgag 109131 Query: 377 gtctaccacttcgaccgcgccatgtcgctcatcgggatgcgctacatc 424 ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 109130 gtctaccacttcgaccgtgccatgtcgctcatcgggatgcgctacatc 109083 Score = 182 bits (92), Expect = 6e-43 Identities = 152/172 (88%) Strand = Plus / Minus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 109515 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 109456 Query: 149 gccagcctcggcggccgcgtcgacgccctctccgtcaaggaggtcggcgacggcaacctc 208 || |||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 109455 gcgcgcctcggcggccgcctcgacgccctcaccatcaaggaggtcggcgacggcaacctc 109396 Query: 209 aacttcgtctacatcgtcacatccgacgccggctccgtcgtcgtcaagcagg 260 |||||||||||||||||| ||||||||||||||| ||||| ||||||||| Sbjct: 109395 aacttcgtctacatcgtcctctccgacgccggctccctcgtcatcaagcagg 109344 Score = 182 bits (92), Expect = 6e-43 Identities = 152/172 (88%) Strand = Plus / Minus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 103693 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 103634 Query: 149 gccagcctcggcggccgcgtcgacgccctctccgtcaaggaggtcggcgacggcaacctc 208 || ||||||||||| || ||||||||||| || |||||||||||||||||||||||||| Sbjct: 103633 gcgcgcctcggcggcagcctcgacgccctcaccatcaaggaggtcggcgacggcaacctc 103574 Query: 209 aacttcgtctacatcgtcacatccgacgccggctccgtcgtcgtcaagcagg 260 |||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 103573 aacttcgtctacatcgtcctctccgacgccggctccgtcgtcatcaagcagg 103522
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 230 bits (116), Expect = 3e-57 Identities = 155/168 (92%) Strand = Plus / Minus Query: 257 caggcgctgccgtacatccggtgcgtgggggactcgtggccgatgacgagggagcgggcc 316 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct: 34192058 caggcgctgccgtacatccgctgcgtgggggattcgtggccgatgacgagggagcgcgcc 34191999 Query: 317 tacttcgaggcgtcggcgctgcgggagcacggccgcctctgcccggaccacgtcccggag 376 ||||||||||| || ||||||| | ||||| || |||||||||||||||| ||||| ||| Sbjct: 34191998 tacttcgaggcctccgcgctgcagaagcaccgcggcctctgcccggaccatgtccccgag 34191939 Query: 377 gtctaccacttcgaccgcgccatgtcgctcatcgggatgcgctacatc 424 ||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 34191938 gtctaccacttcgaccgggccatgtcgctgatcgggatgcgctacatc 34191891 Score = 190 bits (96), Expect = 3e-45 Identities = 150/168 (89%) Strand = Plus / Minus Query: 257 caggcgctgccgtacatccggtgcgtgggggactcgtggccgatgacgagggagcgggcc 316 |||||||||||||||||||| | |||||||| || ||||||||| |||||||||| ||| Sbjct: 34197868 caggcgctgccgtacatccgcttagtgggggattcatggccgatgtcgagggagcgcgcc 34197809 Query: 317 tacttcgaggcgtcggcgctgcgggagcacggccgcctctgcccggaccacgtcccggag 376 || |||||||| || ||||||| | ||||| || ||||||||||||||| ||||| ||| Sbjct: 34197808 tatttcgaggcctccgcgctgcagaagcaccgcgccctctgcccggaccatgtccccgag 34197749 Query: 377 gtctaccacttcgaccgcgccatgtcgctcatcgggatgcgctacatc 424 ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 34197748 gtctaccacttcgaccgtgccatgtcgctcatcgggatgcgctacatc 34197701 Score = 182 bits (92), Expect = 6e-43 Identities = 152/172 (88%) Strand = Plus / Minus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 34198133 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 34198074 Query: 149 gccagcctcggcggccgcgtcgacgccctctccgtcaaggaggtcggcgacggcaacctc 208 || |||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 34198073 gcgcgcctcggcggccgcctcgacgccctcaccatcaaggaggtcggcgacggcaacctc 34198014 Query: 209 aacttcgtctacatcgtcacatccgacgccggctccgtcgtcgtcaagcagg 260 |||||||||||||||||| ||||||||||||||| ||||| ||||||||| Sbjct: 34198013 aacttcgtctacatcgtcctctccgacgccggctccctcgtcatcaagcagg 34197962 Score = 182 bits (92), Expect = 6e-43 Identities = 152/172 (88%) Strand = Plus / Minus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 34192311 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 34192252 Query: 149 gccagcctcggcggccgcgtcgacgccctctccgtcaaggaggtcggcgacggcaacctc 208 || ||||||||||| || ||||||||||| || |||||||||||||||||||||||||| Sbjct: 34192251 gcgcgcctcggcggcagcctcgacgccctcaccatcaaggaggtcggcgacggcaacctc 34192192 Query: 209 aacttcgtctacatcgtcacatccgacgccggctccgtcgtcgtcaagcagg 260 |||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 34192191 aacttcgtctacatcgtcctctccgacgccggctccgtcgtcatcaagcagg 34192140 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 63 tcgccgccatggccgccggcgacga 87 |||||||||| |||||||||||||| Sbjct: 30672799 tcgccgccatcgccgccggcgacga 30672823
>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete sequence Length = 101125 Score = 230 bits (116), Expect = 3e-57 Identities = 155/168 (92%) Strand = Plus / Minus Query: 257 caggcgctgccgtacatccggtgcgtgggggactcgtggccgatgacgagggagcgggcc 316 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct: 42738 caggcgctgccgtacatccgctgcgtgggggattcgtggccgatgacgagggagcgcgcc 42679 Query: 317 tacttcgaggcgtcggcgctgcgggagcacggccgcctctgcccggaccacgtcccggag 376 ||||||||||| || ||||||| | ||||| || |||||||||||||||| ||||| ||| Sbjct: 42678 tacttcgaggcctccgcgctgcagaagcaccgcggcctctgcccggaccatgtccccgag 42619 Query: 377 gtctaccacttcgaccgcgccatgtcgctcatcgggatgcgctacatc 424 ||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 42618 gtctaccacttcgaccgggccatgtcgctgatcgggatgcgctacatc 42571 Score = 190 bits (96), Expect = 3e-45 Identities = 150/168 (89%) Strand = Plus / Minus Query: 257 caggcgctgccgtacatccggtgcgtgggggactcgtggccgatgacgagggagcgggcc 316 |||||||||||||||||||| | |||||||| || ||||||||| |||||||||| ||| Sbjct: 48548 caggcgctgccgtacatccgcttagtgggggattcatggccgatgtcgagggagcgcgcc 48489 Query: 317 tacttcgaggcgtcggcgctgcgggagcacggccgcctctgcccggaccacgtcccggag 376 || |||||||| || ||||||| | ||||| || ||||||||||||||| ||||| ||| Sbjct: 48488 tatttcgaggcctccgcgctgcagaagcaccgcgccctctgcccggaccatgtccccgag 48429 Query: 377 gtctaccacttcgaccgcgccatgtcgctcatcgggatgcgctacatc 424 ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 48428 gtctaccacttcgaccgtgccatgtcgctcatcgggatgcgctacatc 48381 Score = 182 bits (92), Expect = 6e-43 Identities = 152/172 (88%) Strand = Plus / Minus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 48813 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 48754 Query: 149 gccagcctcggcggccgcgtcgacgccctctccgtcaaggaggtcggcgacggcaacctc 208 || |||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 48753 gcgcgcctcggcggccgcctcgacgccctcaccatcaaggaggtcggcgacggcaacctc 48694 Query: 209 aacttcgtctacatcgtcacatccgacgccggctccgtcgtcgtcaagcagg 260 |||||||||||||||||| ||||||||||||||| ||||| ||||||||| Sbjct: 48693 aacttcgtctacatcgtcctctccgacgccggctccctcgtcatcaagcagg 48642 Score = 182 bits (92), Expect = 6e-43 Identities = 152/172 (88%) Strand = Plus / Minus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 42991 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 42932 Query: 149 gccagcctcggcggccgcgtcgacgccctctccgtcaaggaggtcggcgacggcaacctc 208 || ||||||||||| || ||||||||||| || |||||||||||||||||||||||||| Sbjct: 42931 gcgcgcctcggcggcagcctcgacgccctcaccatcaaggaggtcggcgacggcaacctc 42872 Query: 209 aacttcgtctacatcgtcacatccgacgccggctccgtcgtcgtcaagcagg 260 |||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 42871 aacttcgtctacatcgtcctctccgacgccggctccgtcgtcatcaagcagg 42820
>gb|AY022951.1| Oryza sativa microsatellite MRG5276 containing (CTG)X8, closest to marker R1427, genomic sequence Length = 224 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 97 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 38 Query: 149 gccagcctcggcggccgcgtcgacgccctc 178 || ||||||||||| || ||||||||||| Sbjct: 37 gcgcgcctcggcggcagcctcgacgccctc 8
>gb|AY022467.1| Oryza sativa microsatellite MRG4792 containing (AGC)X8, closest to marker R1427, genomic sequence Length = 224 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Plus Query: 89 ttccgcccgctggacgaggcctccctcgtggcctacatccgggcgaccccggcgctggcc 148 ||||||||||| |||||||| ||||| |||||||||||| ||| || || || || ||| Sbjct: 130 ttccgcccgctcgacgaggcgtccctggtggcctacatcaaggccacgcccgccctcgcc 189 Query: 149 gccagcctcggcggccgcgtcgacgccctc 178 || ||||||||||| || ||||||||||| Sbjct: 190 gcgcgcctcggcggcagcctcgacgccctc 219
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 180 ccgtcaaggaggtcggcgacggcaacctcaacttcgtctacatcgtcac 228 ||||||||||| |||||||||||||||||||| |||| | ||||||||| Sbjct: 1643323 ccgtcaaggagatcggcgacggcaacctcaacctcgtgttcatcgtcac 1643371 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 gctcgccgccatggccgccggcga 84 ||||||||||||||| |||||||| Sbjct: 1515076 gctcgccgccatggcggccggcga 1515099
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 46.1 bits (23), Expect = 0.093 Identities = 35/39 (89%) Strand = Plus / Minus Query: 188 gaggtcggcgacggcaacctcaacttcgtctacatcgtc 226 ||||||||||||||||| || ||| |||||| ||||||| Sbjct: 6021591 gaggtcggcgacggcaatctgaacctcgtcttcatcgtc 6021553
>ref|NM_187895.1| Oryza sativa (japonica cultivar-group), Ozsa8337 predicted mRNA Length = 1332 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 52 cccggcccagctcgccgccatg 73 |||||||||||||||||||||| Sbjct: 312 cccggcccagctcgccgccatg 291
>ref|XM_550447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1937 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 67 cgccatggccgccggcgacgag 88 |||||||||||||||||||||| Sbjct: 65 cgccatggccgccggcgacgag 44
>ref|XM_550448.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2201 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 67 cgccatggccgccggcgacgag 88 |||||||||||||||||||||| Sbjct: 83 cgccatggccgccggcgacgag 62
>ref|XM_844159.1| PREDICTED: Canis familiaris similar to CG30392-PA (LOC607478), mRNA Length = 993 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 64 cgccgccatggccgccggcgacgagt 89 |||||||||||||||| ||||||||| Sbjct: 585 cgccgccatggccgccagcgacgagt 560
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 247 cgtcgtcaagcaggcgctgccg 268 |||||||||||||||||||||| Sbjct: 1907466 cgtcgtcaagcaggcgctgccg 1907445
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 130 ggcgaccccggcgctggccgcc 151 |||||||||||||||||||||| Sbjct: 2478475 ggcgaccccggcgctggccgcc 2478496
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0711E10 Length = 157903 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 52 cccggcccagctcgccgccatg 73 |||||||||||||||||||||| Sbjct: 45773 cccggcccagctcgccgccatg 45794
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Plus Query: 249 tcgtcaagcaggcgctgccgtacatccggtgcgtgggggactcgtggccg 298 ||||||| |||||||||||||| |||| |||||||| || || |||||| Sbjct: 495043 tcgtcaaacaggcgctgccgtatgtccgatgcgtgggtgagtcctggccg 495092
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 307 ggagcgggcctacttcgaggcg 328 |||||||||||||||||||||| Sbjct: 2963182 ggagcgggcctacttcgaggcg 2963161 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 cgctggccgccagcctcggcg 161 ||||||||||||||||||||| Sbjct: 1942133 cgctggccgccagcctcggcg 1942153 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 gcgaccccggcgctggccgcc 151 ||||||||||||||||||||| Sbjct: 1613557 gcgaccccggcgctggccgcc 1613537
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 cgccatggccgccggcgacgag 88 |||||||||||||||||||||| Sbjct: 373889 cgccatggccgccggcgacgag 373910 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 ccgcgtcgacgccctctccgtcaag 187 |||||||||||||||| |||||||| Sbjct: 17287435 ccgcgtcgacgccctccccgtcaag 17287459
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 52 cccggcccagctcgccgccatg 73 |||||||||||||||||||||| Sbjct: 8470620 cccggcccagctcgccgccatg 8470641
>gb|AC006064.10| Homo sapiens 12 PAC RP5-940J5 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 172571 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 325 ggcgtcggcgctgcgggagcacggcc 350 |||||||| ||||||||||||||||| Sbjct: 105712 ggcgtcggtgctgcgggagcacggcc 105737
>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0705D01 Length = 147174 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 52 cccggcccagctcgccgccatg 73 |||||||||||||||||||||| Sbjct: 85575 cccggcccagctcgccgccatg 85596
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 cgccatggccgccggcgacgag 88 |||||||||||||||||||||| Sbjct: 83842 cgccatggccgccggcgacgag 83863
>dbj|AK103793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145O03, full insert sequence Length = 2199 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 67 cgccatggccgccggcgacgag 88 |||||||||||||||||||||| Sbjct: 83 cgccatggccgccggcgacgag 62
>dbj|AK071985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091O21, full insert sequence Length = 1936 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 67 cgccatggccgccggcgacgag 88 |||||||||||||||||||||| Sbjct: 64 cgccatggccgccggcgacgag 43
>gb|AC152103.2| Ostreococcus sp. CCE9901 clone JGIACFB-9A1, complete sequence Length = 40624 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 192 tcggcgacggcaacctcaacttcgtctacatcgtcac 228 |||| ||||| ||| ||||||| |||||||||||||| Sbjct: 1758 tcggtgacggtaacatcaactttgtctacatcgtcac 1722
>ref|XM_463944.1| Oryza sativa (japonica cultivar-group), mRNA Length = 231 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 tccgacgccggctccgtcgtcgtca 254 |||||||||||| |||||||||||| Sbjct: 187 tccgacgccggcaccgtcgtcgtca 211
>ref|XM_470202.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3093 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 148 cgccagcctcggcggccgcgtcgac 172 ||||||| ||||||||||||||||| Sbjct: 2859 cgccagcgtcggcggccgcgtcgac 2883
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 148 cgccagcctcggcggccgcgtcgac 172 ||||||| ||||||||||||||||| Sbjct: 2477717 cgccagcgtcggcggccgcgtcgac 2477693 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ggccgccggcgacgagttcc 92 |||||||||||||||||||| Sbjct: 27500371 ggccgccggcgacgagttcc 27500352 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ggccgccggcgacgagttcc 92 |||||||||||||||||||| Sbjct: 27497390 ggccgccggcgacgagttcc 27497371
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 gcaggcgctgccgtacatccg 276 ||||||||||||||||||||| Sbjct: 3690269 gcaggcgctgccgtacatccg 3690249
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09, complete sequence Length = 152732 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 63 tcgccgccatggccgccggcgacga 87 |||||||||| |||||||||||||| Sbjct: 76530 tcgccgccatcgccgccggcgacga 76554
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 cccagctcgccgccatggccg 77 ||||||||||||||||||||| Sbjct: 2761716 cccagctcgccgccatggccg 2761736 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tcgccgccatggccgccggc 82 |||||||||||||||||||| Sbjct: 5414998 tcgccgccatggccgccggc 5415017
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 gccgccagcctcggcggccgcgtcg 170 |||||| |||||||||||||||||| Sbjct: 4976211 gccgcccgcctcggcggccgcgtcg 4976235
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 148 cgccagcctcggcggccgcgtcgac 172 ||||||| ||||||||||||||||| Sbjct: 2477827 cgccagcgtcggcggccgcgtcgac 2477803 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ggccgccggcgacgagttcc 92 |||||||||||||||||||| Sbjct: 27591694 ggccgccggcgacgagttcc 27591675 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ggccgccggcgacgagttcc 92 |||||||||||||||||||| Sbjct: 27588713 ggccgccggcgacgagttcc 27588694
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 gccatggccgccggcgacgag 88 ||||||||||||||||||||| Sbjct: 18004979 gccatggccgccggcgacgag 18004959 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 tccgacgccggctccgtcgtcgtca 254 |||||||||||| |||||||||||| Sbjct: 1258547 tccgacgccggcaccgtcgtcgtca 1258571
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 148 cgccagcctcggcggccgcgtcgac 172 ||||||| ||||||||||||||||| Sbjct: 50213 cgccagcgtcggcggccgcgtcgac 50189
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 tccgacgccggctccgtcgtcgtca 254 |||||||||||| |||||||||||| Sbjct: 89638 tccgacgccggcaccgtcgtcgtca 89662
>dbj|AP004688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036C11 Length = 137995 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 ccgcgtcgacgccctctccgtcaag 187 |||||||||||||||| |||||||| Sbjct: 136162 ccgcgtcgacgccctccccgtcaag 136186
>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H06 Length = 142832 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 ccgcgtcgacgccctctccgtcaag 187 |||||||||||||||| |||||||| Sbjct: 24028 ccgcgtcgacgccctccccgtcaag 24052
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 gccgccagcctcggcggccgcgtcg 170 |||||| |||||||||||||||||| Sbjct: 17900 gccgcccgcctcggcggccgcgtcg 17924
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F04 Length = 139563 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 gccatggccgccggcgacgag 88 ||||||||||||||||||||| Sbjct: 66573 gccatggccgccggcgacgag 66553
>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0018H03, complete sequence Length = 94450 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 tccgacgccggctccgtcgtcgtca 254 |||||||||||| |||||||||||| Sbjct: 32576 tccgacgccggcaccgtcgtcgtca 32600
>dbj|AK121899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105F16, full insert sequence Length = 2880 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 ccgcgtcgacgccctctccgtcaag 187 |||||||||||||||| |||||||| Sbjct: 395 ccgcgtcgacgccctccccgtcaag 419
>dbj|AK119391.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-C10, full insert sequence Length = 3221 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 gccgccagcctcggcggccgcgtcg 170 |||||| |||||||||||||||||| Sbjct: 2682 gccgcccgcctcggcggccgcgtcg 2706
>dbj|AK109534.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C08, full insert sequence Length = 1278 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 cccagctcgccgccatggccg 77 ||||||||||||||||||||| Sbjct: 344 cccagctcgccgccatggccg 364
>dbj|AK099764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094N16, full insert sequence Length = 2836 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 ccgcgtcgacgccctctccgtcaag 187 |||||||||||||||| |||||||| Sbjct: 456 ccgcgtcgacgccctccccgtcaag 480
>dbj|AK103794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145O08, full insert sequence Length = 3063 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 ccgcgtcgacgccctctccgtcaag 187 |||||||||||||||| |||||||| Sbjct: 395 ccgcgtcgacgccctccccgtcaag 419
>dbj|AK068973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001O14, full insert sequence Length = 3801 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 gccatggccgccggcgacgag 88 ||||||||||||||||||||| Sbjct: 60 gccatggccgccggcgacgag 40
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 cccggcgctggccgccagcct 156 ||||||||||||||||||||| Sbjct: 594782 cccggcgctggccgccagcct 594802
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 cccagctcgccgccatggccg 77 ||||||||||||||||||||| Sbjct: 2761660 cccagctcgccgccatggccg 2761680 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tcgccgccatggccgccggc 82 |||||||||||||||||||| Sbjct: 5414987 tcgccgccatggccgccggc 5415006
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 cccagctcgccgccatggccg 77 ||||||||||||||||||||| Sbjct: 108731 cccagctcgccgccatggccg 108711
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 cccagctcgccgccatggccg 77 ||||||||||||||||||||| Sbjct: 130641 cccagctcgccgccatggccg 130661
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gcgctgccgtacatccggtg 279 |||||||||||||||||||| Sbjct: 3538888 gcgctgccgtacatccggtg 3538869
>ref|XM_469352.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1017 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ggccgccggcgacgagttcc 92 |||||||||||||||||||| Sbjct: 307 ggccgccggcgacgagttcc 326
>ref|XM_469351.1| Oryza sativa (japonica cultivar-group), mRNA Length = 684 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ggccgccggcgacgagttcc 92 |||||||||||||||||||| Sbjct: 165 ggccgccggcgacgagttcc 184
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 ttcgaggcgtcggcgctgcg 339 |||||||||||||||||||| Sbjct: 1028635 ttcgaggcgtcggcgctgcg 1028654
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgccatggccgccggcg 83 |||||||||||||||||||| Sbjct: 85771 cgccgccatggccgccggcg 85752
>gb|AY658239.1| Synthetic construct Peudomonas aeruginosa clone FLH052529.01F PA5259 gene, partial cds Length = 756 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 cggcgctggccgccagcctcggcg 161 |||| ||||||||||||||||||| Sbjct: 47 cggccctggccgccagcctcggcg 70
>ref|XM_957117.1| Neurospora crassa OR74A hypothetical protein (NCU05211.1) partial mRNA Length = 4686 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 ctcgccgccatggccgccggcgac 85 ||||||||||| |||||||||||| Sbjct: 4285 ctcgccgccatcgccgccggcgac 4308
>ref|XM_324567.1| Neurospora crassa OR74A hypothetical protein (NCU05211.1) partial mRNA Length = 4686 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 ctcgccgccatggccgccggcgac 85 ||||||||||| |||||||||||| Sbjct: 4285 ctcgccgccatcgccgccggcgac 4308
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tcggcggccgcgtcgacgcc 175 |||||||||||||||||||| Sbjct: 4295904 tcggcggccgcgtcgacgcc 4295885 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 gtcggcgacggcaacctcaa 210 |||||||||||||||||||| Sbjct: 3650568 gtcggcgacggcaacctcaa 3650587
>gb|AF359361.3| Gibberella zeae strain GZ3639 trichothecene gene cluster, complete sequence Length = 57840 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gccatgtcgctcatcgggat 414 |||||||||||||||||||| Sbjct: 54595 gccatgtcgctcatcgggat 54576
>ref|XM_838258.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1175) partial mRNA Length = 6936 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 ttcgaggcgtcggcgctgcg 339 |||||||||||||||||||| Sbjct: 4630 ttcgaggcgtcggcgctgcg 4649
>ref|XM_752333.1| Ustilago maydis 521 hypothetical protein (UM01279.1) partial mRNA Length = 1677 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 caaggaggtcggcgacggca 203 |||||||||||||||||||| Sbjct: 276 caaggaggtcggcgacggca 295
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ccggcgctggccgccagcct 156 |||||||||||||||||||| Sbjct: 2390083 ccggcgctggccgccagcct 2390102
>emb|AL117328.5|HSA494O16 Human DNA sequence from clone RP11-494O16 on chromosome 22, complete sequence Length = 50502 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cacggccgcctctgcccgga 363 |||||||||||||||||||| Sbjct: 9846 cacggccgcctctgcccgga 9827
>gb|AY282786.1| Desulfovibrio gigas ech operon, complete sequence Length = 5454 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgccatggccgccggcg 83 |||||||||||||||||||| Sbjct: 1255 cgccgccatggccgccggcg 1236
>emb|X15239.1|ZMPEPC1G Maize PEPC1 gene for phosphoenolpyruvate carboxylase (EC 4.1.1.31) Length = 6151 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 gctccgtcgtcgtcaagcaggcgc 263 ||||||||||||||||| |||||| Sbjct: 4742 gctccgtcgtcgtcaaggaggcgc 4765
>emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 1/10 Length = 348071 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cggcgacggcaacctcaact 212 |||||||||||||||||||| Sbjct: 164212 cggcgacggcaacctcaact 164193
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ccggcccagctcgccgccat 72 |||||||||||||||||||| Sbjct: 265125 ccggcccagctcgccgccat 265144
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ccggcccagctcgccgccat 72 |||||||||||||||||||| Sbjct: 336799 ccggcccagctcgccgccat 336818
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ccggcccagctcgccgccat 72 |||||||||||||||||||| Sbjct: 339275 ccggcccagctcgccgccat 339256
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gcggccgcgtcgacgccctc 178 |||||||||||||||||||| Sbjct: 60042 gcggccgcgtcgacgccctc 60023
>emb|AJ536629.1|ZMA536629 Zea mays mRNA for phosphoenolpyruvate carboxylase (ppc1 gene), clone pM500 Length = 2913 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 gctccgtcgtcgtcaagcaggcgc 263 ||||||||||||||||| |||||| Sbjct: 2186 gctccgtcgtcgtcaaggaggcgc 2209
>emb|X15238.1|ZMPEPC1 Maize mRNA for phosphoenolpyruvate carboxylase (EC 4.1.1.31) Length = 3265 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 gctccgtcgtcgtcaagcaggcgc 263 ||||||||||||||||| |||||| Sbjct: 2266 gctccgtcgtcgtcaaggaggcgc 2289
>emb|X15642.1|ZMPEP Z.mays gene for phosphoenolpyruvate carboxylase (EC 4.1.1.31) Length = 6781 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 gctccgtcgtcgtcaagcaggcgc 263 ||||||||||||||||| |||||| Sbjct: 5406 gctccgtcgtcgtcaaggaggcgc 5429
>gb|AY027567.1| Rhodococcus opacus strain HL 24-1 hydride transferase 2 (ht2) gene, partial cds Length = 937 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tcggcggccgcgtcgacgcc 175 |||||||||||||||||||| Sbjct: 854 tcggcggccgcgtcgacgcc 835
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tgcgacagtgtaaacaccgg 28 |||||||||||||||||||| Sbjct: 1881976 tgcgacagtgtaaacaccgg 1881995
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgccgccatggccgccggcg 83 |||||||||||||||||||| Sbjct: 568372 cgccgccatggccgccggcg 568353
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cggcgacggcaacctcaact 212 |||||||||||||||||||| Sbjct: 164211 cggcgacggcaacctcaact 164192
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ggccgccggcgacgagttcc 92 |||||||||||||||||||| Sbjct: 53124 ggccgccggcgacgagttcc 53143 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ggccgccggcgacgagttcc 92 |||||||||||||||||||| Sbjct: 50143 ggccgccggcgacgagttcc 50162
>gb|M74844.1|PSEHEMCD Pseudomonas aeruginosa AlgR (algR) gene, partial cds; and porophorbilinogen deaminase (hemC) and uropprphyrinogen-III-synthase (hemD) genes, complete cds Length = 1872 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 cggcgctggccgccagcctcggcg 161 |||| ||||||||||||||||||| Sbjct: 1163 cggccctggccgccagcctcggcg 1186
>gb|AE004938.1| Pseudomonas aeruginosa PAO1, section 499 of 529 of the complete genome Length = 9958 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 cggcgctggccgccagcctcggcg 161 |||| ||||||||||||||||||| Sbjct: 5318 cggccctggccgccagcctcggcg 5295
>gb|AE004643.1| Pseudomonas aeruginosa PAO1, section 204 of 529 of the complete genome Length = 10871 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 ggcgctggccgccagcctcg 158 |||||||||||||||||||| Sbjct: 5616 ggcgctggccgccagcctcg 5597
>gb|AE004638.1| Pseudomonas aeruginosa PAO1, section 199 of 529 of the complete genome Length = 11886 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 gaccccggcgctggccgccagcct 156 ||||||||||||| |||||||||| Sbjct: 9807 gaccccggcgctgaccgccagcct 9784
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 105645 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tcgccgccatggccgccggc 82 |||||||||||||||||||| Sbjct: 87014 tcgccgccatggccgccggc 87033
>emb|AJ335995.1|HSA335995 Homo sapiens genomic sequence surrounding NotI site, clone NR3-BN18C Length = 714 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 cggccgcctctgcccggacc 365 |||||||||||||||||||| Sbjct: 236 cggccgcctctgcccggacc 255
>dbj|AK059872.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F02, full insert sequence Length = 1028 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ggccgccggcgacgagttcc 92 |||||||||||||||||||| Sbjct: 318 ggccgccggcgacgagttcc 337
>gb|AY103747.1| Zea mays PCO070206 mRNA sequence Length = 3289 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 gctccgtcgtcgtcaagcaggcgc 263 ||||||||||||||||| |||||| Sbjct: 2266 gctccgtcgtcgtcaaggaggcgc 2289
>gb|AY105121.1| Zea mays PCO076603 mRNA sequence Length = 801 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 tccgacgccggctccgtcgtcgtc 253 |||||||||||| ||||||||||| Sbjct: 73 tccgacgccggcgccgtcgtcgtc 50
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ccgcccgctggacgaggcct 110 |||||||||||||||||||| Sbjct: 5280154 ccgcccgctggacgaggcct 5280173
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 cggcggccgcgtcgacgccctctc 180 |||||||||| ||||||||||||| Sbjct: 709699 cggcggccgcttcgacgccctctc 709676
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 tcgccgccatggccgccggc 82 |||||||||||||||||||| Sbjct: 50810 tcgccgccatggccgccggc 50791
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gccgccatggccgccggcga 84 |||||||||||||||||||| Sbjct: 1254045 gccgccatggccgccggcga 1254064 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gctcgccgccatggccgccg 80 |||||||||||||||||||| Sbjct: 837251 gctcgccgccatggccgccg 837232 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,093,293 Number of Sequences: 3902068 Number of extensions: 2093293 Number of successful extensions: 59943 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56976 Number of HSP's gapped (non-prelim): 2965 length of query: 428 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 406 effective length of database: 17,147,199,772 effective search space: 6961763107432 effective search space used: 6961763107432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
