Clone Information

BLAST Search Result

Clone Name	bast44c03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL17_SYNY3 (P73296) 50S ribosomal protein L17	60	4e-09
2	RL17_SYNP6 (O24711) 50S ribosomal protein L17	52	8e-07
3	RL17_HELPY (P56042) 50S ribosomal protein L17	35	0.080
4	RL17_HELPJ (Q9ZJT6) 50S ribosomal protein L17	35	0.080
5	IE68_SHV21 (Q01042) Immediate-early protein	35	0.080
6	RL17_DEIRA (Q9RSJ5) 50S ribosomal protein L17	35	0.10
7	NUSG_STRCO (P36266) Transcription antitermination protein nusG	35	0.10
8	RL17_THEMA (Q9X1I1) 50S ribosomal protein L17	35	0.10
9	RL17_MYCLE (Q9X797) 50S ribosomal protein L17	35	0.10
10	RL17_STAHJ (Q4L887) 50S ribosomal protein L17	34	0.18
11	RL17_STAES (Q8CRI5) 50S ribosomal protein L17	34	0.18
12	RL17_STAEQ (Q5HM26) 50S ribosomal protein L17	34	0.18
13	RL17_MYCTU (P0A5V4) 50S ribosomal protein L17	34	0.23
14	RL17_MYCBO (P0A5V5) 50S ribosomal protein L17	34	0.23
15	RL17_STAS1 (Q49ZE1) 50S ribosomal protein L17	34	0.23
16	RL17_STAAW (Q7A087) 50S ribosomal protein L17	34	0.23
17	RL17_STAAS (Q6G798) 50S ribosomal protein L17	34	0.23
18	RL17_STAAR (Q6GEL0) 50S ribosomal protein L17	34	0.23
19	RL17_STAAN (Q7A469) 50S ribosomal protein L17	34	0.23
20	RL17_STAAM (Q99S46) 50S ribosomal protein L17	34	0.23
21	RL17_STAAC (Q5HDY5) 50S ribosomal protein L17	34	0.23
22	RL17_BACSU (P20277) 50S ribosomal protein L17 (BL15) (BL21)	33	0.30
23	RL17_RHIME (Q926A5) 50S ribosomal protein L17	33	0.40
24	RL17_RHOPA (Q6N4V8) 50S ribosomal protein L17 (RRP-L17)	33	0.40
25	NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Si...	33	0.52
26	RL17_BACST (P07843) 50S ribosomal protein L17 (BL21)	33	0.52
27	NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Si...	32	0.67
28	RGS3_HUMAN (P49796) Regulator of G-protein signaling 3 (RGS3) (R...	32	0.88
29	MP62_LYTPI (P91753) Mitotic apparatus protein p62	32	0.88
30	PTMA_BOVIN (P01252) Prothymosin alpha [Contains: Thymosin alpha-1]	32	1.2
31	YG3R_YEAST (P53288) Hypothetical 22.2 kDa protein in NSR1-TIF463...	32	1.2
32	INO80_YEAST (P53115) Putative DNA helicase INO80 (EC 3.6.1.-) (I...	31	1.5
33	TCF8_MESAU (Q60542) Transcription factor 8 (Zinc finger protein ...	31	2.0
34	RL17_THET8 (Q9Z9H5) 50S ribosomal protein L17	31	2.0
35	DPO3B_STAES (Q8CQK6) DNA polymerase III beta subunit (EC 2.7.7.7)	31	2.0
36	DPO3B_STAEQ (Q5HK00) DNA polymerase III beta subunit (EC 2.7.7.7)	31	2.0
37	A4_TETFL (O73683) Amyloid beta A4 protein precursor (APP) (ABPP)...	30	2.6
38	NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-...	30	2.6
39	MYCN_XENLA (P24793) N-myc protein	30	2.6
40	PTMA_PONPY (Q5R790) Prothymosin alpha [Contains: Thymosin alpha]	30	3.3
41	RL17_BACHD (O50635) 50S ribosomal protein L17	30	3.3
42	IRX3_MOUSE (P81067) Iroquois-class homeodomain protein IRX-3 (Ir...	30	3.3
43	PTMA_HUMAN (P06454) Prothymosin alpha [Contains: Thymosin alpha-1]	30	3.3
44	RL17_HAEIN (P44355) 50S ribosomal protein L17	30	3.3
45	RL17_XANCP (Q9Z3E6) 50S ribosomal protein L17	30	4.4
46	BRD2_HUMAN (P25440) Bromodomain-containing protein 2 (RING3 prot...	30	4.4
47	DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx)	30	4.4
48	V_RINDR (Q03340) Nonstructural protein V	30	4.4
49	V_RINDK (P60169) Nonstructural protein V	30	4.4
50	SEM6B_HUMAN (Q9H3T3) Semaphorin-6B precursor (Semaphorin Z) (Sem...	30	4.4
51	RFCL_PYRKO (Q5JHP1) Replication factor C large subunit (RFC larg...	30	4.4
52	TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome p...	30	4.4
53	MYT1L_HUMAN (Q9UL68) Myelin transcription factor 1-like protein ...	30	4.4
54	PHOSP_RINDR (Q03335) Phosphoprotein (Protein P)	30	4.4
55	PHOSP_RINDK (P35945) Phosphoprotein (Protein P)	30	4.4
56	RL17_SHIFL (P0AG47) 50S ribosomal protein L17	29	5.7
57	RL17_ECOLI (P0AG44) 50S ribosomal protein L17	29	5.7
58	RL17_ECOL6 (P0AG45) 50S ribosomal protein L17	29	5.7
59	RL17_ECO57 (P0AG46) 50S ribosomal protein L17	29	5.7
60	IF4G_SCHPO (Q10475) Eukaryotic translation initiation factor 4 g...	29	5.7
61	MBB1A_HUMAN (Q9BQG0) Myb-binding protein 1A	29	5.7
62	PP2CG_BOVIN (P79126) Protein phosphatase 2C isoform gamma (EC 3....	29	5.7
63	CCNE_DROME (P54733) G1/S-specific cyclin-E (DmCycE)	26	7.1
64	YAK1_SCHPO (Q09915) Hypothetical protein C1F7.01c in chromosome I	29	7.5
65	TNNT2_RABIT (P09741) Troponin T, cardiac muscle (TnTc) (Cardiac ...	29	7.5
66	TRF5_ASHGO (Q9HFW3) Topoisomerase 1-related protein TRF5	29	7.5
67	RL17_PSEAE (O52761) 50S ribosomal protein L17	29	7.5
68	DAXX_RAT (Q8VIB2) Death domain-associated protein 6 (Daxx)	29	7.5
69	EPN4_MOUSE (Q99KN9) Epsin-4 (Epsin-related protein) (EpsinR) (En...	28	9.7
70	RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein	28	9.7
71	NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-...	28	9.7
72	IWS1_RAT (Q3SWT4) IWS1-like protein	28	9.7
73	ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein ...	28	9.7
74	DPO3B_STAAW (P0A023) DNA polymerase III beta subunit (EC 2.7.7.7)	28	9.7
75	DPO3B_STAAU (P0A024) DNA polymerase III beta subunit (EC 2.7.7.7)	28	9.7
76	DPO3B_STAAS (Q6GD88) DNA polymerase III beta subunit (EC 2.7.7.7)	28	9.7
77	DPO3B_STAAR (Q6GKU3) DNA polymerase III beta subunit (EC 2.7.7.7)	28	9.7
78	DPO3B_STAAN (P99103) DNA polymerase III beta subunit (EC 2.7.7.7)	28	9.7
79	DPO3B_STAAM (P0A022) DNA polymerase III beta subunit (EC 2.7.7.7)	28	9.7
80	DPO3B_STAAC (Q5HJZ4) DNA polymerase III beta subunit (EC 2.7.7.7)	28	9.7
81	NCOR1_XENTR (Q4KKX4) Nuclear receptor corepressor 1 (N-CoR1) (N-...	28	9.7
82	EPN4_HUMAN (Q14677) Epsin-4 (Epsin-related protein) (EpsinR) (En...	28	9.7

>RL17_SYNY3 (P73296) 50S ribosomal protein L17|
          Length = 116

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 26/36 (72%), Positives = 33/36 (91%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH  R+P+LG+PADQRKALLR LTT+L++HG+IKT
Sbjct: 1   MRHRCRVPQLGKPADQRKALLRALTTELIRHGQIKT 36

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>RL17_SYNP6 (O24711) 50S ribosomal protein L17|
          Length = 116

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 22/36 (61%), Positives = 30/36 (83%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH   +P+LGRPADQRKALLR LTT+++++G + T
Sbjct: 1   MRHRCNVPQLGRPADQRKALLRSLTTEIIRNGTVTT 36

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>RL17_HELPY (P56042) 50S ribosomal protein L17|
          Length = 116

 Score = 35.4 bits (80), Expect = 0.080
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH     +LGR +  RKALL+ L   L++H +I+T
Sbjct: 1   MRHKHGYRKLGRTSSHRKALLKNLAIALIEHNKIET 36

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>RL17_HELPJ (Q9ZJT6) 50S ribosomal protein L17|
          Length = 116

 Score = 35.4 bits (80), Expect = 0.080
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH     +LGR +  RKALL+ L   L++H +I+T
Sbjct: 1   MRHKHGYRKLGRTSSHRKALLKNLAIALIEHNKIET 36

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>IE68_SHV21 (Q01042) Immediate-early protein|
          Length = 407

 Score = 35.4 bits (80), Expect = 0.080
 Identities = 25/76 (32%), Positives = 34/76 (44%)
 Frame = -2

Query: 331 AKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTAADG 152
           A+ +  E EE   +  +AE AEE  A E E+EAE+ E +E     A EA        A+ 
Sbjct: 126 AEAEEEEAEEEEAEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAE--EAEEEAEE 183

Query: 151 EGRSAGSAARRESMRQ 104
           E   A  A   E   +
Sbjct: 184 EAEEAEEAEEAEEAEE 199



 Score = 32.0 bits (71), Expect = 0.88
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = -2

Query: 322 DSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTAADGEGR 143
           +  E EE  EK ++ E AEE      E+EAE+ E +E       EA       A + E  
Sbjct: 94  EEAEEEEAEEKEAEEEEAEEAEEEAEEEEAEEAEAEE-EEAEEEEAEEEEAEEAEEEEAE 152

Query: 142 SAGSAARRESMRQ 104
            A   A  E   +
Sbjct: 153 EAEEEAEEEEAEE 165



 Score = 30.0 bits (66), Expect = 3.3
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = -2

Query: 331 AKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTAADG 152
           A+ +  E  E  E+ ++ E AEE  A E E+E  +   +E     A E A      A + 
Sbjct: 118 AEEEEAEEAEAEEEEAEEEEAEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEA 177

Query: 151 EGRSAGSAARRESMRQ 104
           E  +   A   E   +
Sbjct: 178 EEEAEEEAEEAEEAEE 193

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>RL17_DEIRA (Q9RSJ5) 50S ribosomal protein L17|
          Length = 116

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRHGK   +L R +  R AL R   T LL+ GRI+T
Sbjct: 1   MRHGKAGRKLNRNSSARVALARAQATALLREGRIQT 36

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>NUSG_STRCO (P36266) Transcription antitermination protein nusG|
          Length = 300

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = -2

Query: 325 LDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTAADGEG 146
           ++  +NE+  E S++AEAA++    ET+++A D E  E     AT+A        AD + 
Sbjct: 23  VEGADNEDT-EASAEAEAADDTVVAETDEDATDAEADETAE--ATDAEATEAEADADADA 79

Query: 145 RSA 137
             A
Sbjct: 80  AEA 82

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>RL17_THEMA (Q9X1I1) 50S ribosomal protein L17|
          Length = 131

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH  +  +LGR    RK+LLR L+ ++++HG I T
Sbjct: 1   MRHRVKRHKLGRYGSHRKSLLRNLSREIVEHGSIVT 36

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>RL17_MYCLE (Q9X797) 50S ribosomal protein L17|
          Length = 170

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 396 PRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           PRLG  +  +KALL  L   L +HGRIKT
Sbjct: 8   PRLGGSSSHQKALLTNLAASLFEHGRIKT 36

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>RL17_STAHJ (Q4L887) 50S ribosomal protein L17|
          Length = 123

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +DQRKA+LR L T L+   RI+T
Sbjct: 5   KLGRTSDQRKAMLRDLATSLIVSERIET 32

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>RL17_STAES (Q8CRI5) 50S ribosomal protein L17|
          Length = 122

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +DQRKA+LR L T L+   RI+T
Sbjct: 5   KLGRTSDQRKAMLRDLATSLIVSERIET 32

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>RL17_STAEQ (Q5HM26) 50S ribosomal protein L17|
          Length = 122

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +DQRKA+LR L T L+   RI+T
Sbjct: 5   KLGRTSDQRKAMLRDLATSLIVSERIET 32

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>RL17_MYCTU (P0A5V4) 50S ribosomal protein L17|
          Length = 180

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 396 PRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           PRLG  +  +KA+L  L T L +HGRI T
Sbjct: 8   PRLGGSSSHQKAILANLATSLFEHGRITT 36

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>RL17_MYCBO (P0A5V5) 50S ribosomal protein L17|
          Length = 180

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 396 PRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           PRLG  +  +KA+L  L T L +HGRI T
Sbjct: 8   PRLGGSSSHQKAILANLATSLFEHGRITT 36

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>RL17_STAS1 (Q49ZE1) 50S ribosomal protein L17|
          Length = 122

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +DQRKA+LR L T L+   R++T
Sbjct: 5   KLGRTSDQRKAMLRDLATSLIVSERVET 32

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>RL17_STAAW (Q7A087) 50S ribosomal protein L17|
          Length = 122

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +DQRKA+LR L T L+   RI+T
Sbjct: 5   KLGRTSDQRKAMLRDLATSLIISERIET 32

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>RL17_STAAS (Q6G798) 50S ribosomal protein L17|
          Length = 122

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +DQRKA+LR L T L+   RI+T
Sbjct: 5   KLGRTSDQRKAMLRDLATSLIISERIET 32

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>RL17_STAAR (Q6GEL0) 50S ribosomal protein L17|
          Length = 122

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +DQRKA+LR L T L+   RI+T
Sbjct: 5   KLGRTSDQRKAMLRDLATSLIISERIET 32

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>RL17_STAAN (Q7A469) 50S ribosomal protein L17|
          Length = 122

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +DQRKA+LR L T L+   RI+T
Sbjct: 5   KLGRTSDQRKAMLRDLATSLIISERIET 32

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>RL17_STAAM (Q99S46) 50S ribosomal protein L17|
          Length = 122

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +DQRKA+LR L T L+   RI+T
Sbjct: 5   KLGRTSDQRKAMLRDLATSLIISERIET 32

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>RL17_STAAC (Q5HDY5) 50S ribosomal protein L17|
          Length = 122

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +DQRKA+LR L T L+   RI+T
Sbjct: 5   KLGRTSDQRKAMLRDLATSLIISERIET 32

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>RL17_BACSU (P20277) 50S ribosomal protein L17 (BL15) (BL21)|
          Length = 119

 Score = 33.5 bits (75), Expect = 0.30
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR + QRKA+LR LTT L+ + RI+T
Sbjct: 4   KLGRTSAQRKAMLRDLTTDLIINERIET 31

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>RL17_RHIME (Q926A5) 50S ribosomal protein L17|
          Length = 141

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRHGK   +L R A  RKA+   +   L++H +I T
Sbjct: 1   MRHGKAGRKLNRTASHRKAMFANMAASLIEHEQIVT 36

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>RL17_RHOPA (Q6N4V8) 50S ribosomal protein L17 (RRP-L17)|
          Length = 139

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           M+HGK   +L R A+ RKA+   +   L+KH +I T
Sbjct: 1   MKHGKVHRKLNRTAEHRKAMFANMCAALIKHEQIVT 36

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>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC)
          Length = 2472

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -2

Query: 319 STENEEVYEKSSDAEAAEEIWAGETEDEA---EDVETKELRRNGATEAACLRGRTAADGE 149
           S E +E  EK  +A+  EE    E E E    E  +      N   EA   +GR  A+ +
Sbjct: 512 SQEEKEEKEKEKEADKEEEKQDAENEKEELSKEKTDDTSGEDNDEKEAVASKGRKTANSQ 571

Query: 148 GRSAGSAAR 122
           GR  G   R
Sbjct: 572 GRRKGRITR 580



 Score = 30.0 bits (66), Expect = 3.3
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
 Frame = -2

Query: 364  LPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEA 185
            LPR  MP SR  +        ++EK  + EA+EE       D  E+ E +   +   TEA
Sbjct: 827  LPRQRMPRSRSLR----PRRSMWEKPEEPEASEEPPESVKSDHKEETEEEPEDKAKGTEA 882

Query: 184  ------ACLR----GRTAADGEGRSAGSAARRES 113
                  A L+    G  AA  +G S+G+    +S
Sbjct: 883  IETVSEAPLKVEEAGSKAAVTKGSSSGATQDSDS 916

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>RL17_BACST (P07843) 50S ribosomal protein L17 (BL21)|
          Length = 119

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR   QRKALLR L T L+ + RI+T
Sbjct: 4   KLGRTTSQRKALLRDLATDLIINERIET 31

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>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC) (CTG repeat p
          Length = 2517

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -2

Query: 316 TENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKEL-----RRNGATEAACLRGRTAADG 152
           +  EE  EK  + EA +E    E E++ ED+  ++        N   EA   +GR  A+ 
Sbjct: 515 SSQEEKDEKEKEKEAEKEEEKPEVENDKEDLLKEKTDDTSGEDNDEKEAVASKGRKTANS 574

Query: 151 EGRSAGSAAR 122
           +GR  G   R
Sbjct: 575 QGRRKGRITR 584

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>RGS3_HUMAN (P49796) Regulator of G-protein signaling 3 (RGS3) (RGP3)|
          Length = 1198

 Score = 32.0 bits (71), Expect = 0.88
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
 Frame = -2

Query: 328  KLDSTENEEVYEKSS------DAEAAEEIWAGETEDEAEDVETKELRRNGATEAACLRGR 167
            +LDST +++   +        DAE AEE+  GE  +E ED +T +      +EA   R  
Sbjct: 860  RLDSTYSQKAGAEQGCSGDEEDAEEAEEVEEGEEGEEDEDEDTSDDNYGERSEAK--RSS 917

Query: 166  TAADGEGRSAGSAAR-RESMRQ 104
                G+G   G + R + S+R+
Sbjct: 918  MIETGQGAEGGLSLRVQNSLRR 939

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>MP62_LYTPI (P91753) Mitotic apparatus protein p62|
          Length = 411

 Score = 32.0 bits (71), Expect = 0.88
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 364 LPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKE 212
           +P  S+ N      D  + E+   K  D E  EE  +GE E+E E+ E +E
Sbjct: 234 VPNGSVENGHAIDDDEDDEEDEDYKVGDEEEEEEATSGEEEEEDEEEEEEE 284

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>PTMA_BOVIN (P01252) Prothymosin alpha [Contains: Thymosin alpha-1]|
          Length = 109

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 343 NSRCAKLDSTENEEVYEKSSDAEA-AEEIWAGETEDEAEDVETKELRRNGATEAACLRGR 167
           N R A  +   NEE  E+ +D E   EE   GE E+E E+ + +E   +   EA    G+
Sbjct: 28  NGREAPANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAEAATGK 87

Query: 166 TAADGE 149
            AA+ +
Sbjct: 88  RAAEDD 93

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>YG3R_YEAST (P53288) Hypothetical 22.2 kDa protein in NSR1-TIF4631 intergenic|
           region
          Length = 203

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 322 DSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTA 161
           DS   +E  ++ SD+++  +  + E EDE ED E +E      +  ACL   T+
Sbjct: 130 DSESEDEDEDEDSDSDSDSDSDSDEDEDEDEDSEEEEETALAFSSLACLEALTS 183

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>INO80_YEAST (P53115) Putative DNA helicase INO80 (EC 3.6.1.-)|
           (Inositol-requiering protein 80)
          Length = 1489

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = -2

Query: 352 SMPNSRCAKLDSTENEEVYE--KSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEAAC 179
           SM N   A+  S +N  + +     DA+  EE    E ED  ED+E  E      T    
Sbjct: 115 SMINKEWAEYQSFKNANLSDIINEKDADEDEEDDEDELEDGEEDMEEDEASTGRHTNGKS 174

Query: 178 LRGRTAADGEGRSAGSAA 125
           +RG        + A +AA
Sbjct: 175 MRGNGIQKSRKKDAAAAA 192

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>TCF8_MESAU (Q60542) Transcription factor 8 (Zinc finger protein BZP)|
          Length = 1043

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = -2

Query: 322  DSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTAADGEGR 143
            DS + EE  E     E  EE   G  + E E+ E +E       EAA        +G   
Sbjct: 960  DSEKEEEEEEDKEMEELQEEKECGNAQAEEEEEEEEEEMDGAKDEAAAKTDGAVENGAAP 1019

Query: 142  SAGSAARRES 113
             AGS  ++ S
Sbjct: 1020 QAGSLEQKAS 1029

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>RL17_THET8 (Q9Z9H5) 50S ribosomal protein L17|
          Length = 118

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH K   +L R +  R AL R     LL HGRI T
Sbjct: 1   MRHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITT 36

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>DPO3B_STAES (Q8CQK6) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 377

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = -2

Query: 367 ILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           I PRT++P     K+D+ EN EV    SD+E + EI   +  D  E VE  E      T 
Sbjct: 22  ISPRTTLPILTGIKIDAKEN-EVILTGSDSEISIEITIPKQVDGEEIVEITE------TG 74

Query: 187 AACLRGRTAAD 155
           +  L GR   D
Sbjct: 75  SVVLPGRFFVD 85

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>DPO3B_STAEQ (Q5HK00) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 377

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = -2

Query: 367 ILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           I PRT++P     K+D+ EN EV    SD+E + EI   +  D  E VE  E      T 
Sbjct: 22  ISPRTTLPILTGIKIDAKEN-EVILTGSDSEISIEITIPKQVDGEEIVEITE------TG 74

Query: 187 AACLRGRTAAD 155
           +  L GR   D
Sbjct: 75  SVVLPGRFFVD 85

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>A4_TETFL (O73683) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer|
           disease amyloid A4 A4 protein homolog) [Contains:
           Beta-amyloid protein (Beta-APP) (A-beta)]
          Length = 780

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 331 AKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVE 221
           A+ D  E EEV +   D +  E+  A + E+E EDV+
Sbjct: 249 AQEDDEEEEEVLDTDQDGDGEEDHEAADDEEEEEDVD 285

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>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid|
           X receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
 Frame = -2

Query: 316 TENEEVYEKSSD-AEAAEEIWAGETEDEAEDVE------TKELRRNGAT-------EAAC 179
           ++ E+V EK  D AE  E+    + +DE +D +      TKE  R  AT       E   
Sbjct: 509 SQEEKVEEKEEDKAEKTEKKEEEKKDDEEKDDKEDSKETTKEKDRTEATAEEPEEREQVT 568

Query: 178 LRGRTAADGEGRSAGSAAR 122
            RGR  A+ +GR  G   R
Sbjct: 569 PRGRKTANSQGRGKGRVTR 587

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>MYCN_XENLA (P24793) N-myc protein|
          Length = 437

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = -2

Query: 406 PSLGMRFPCLIANILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAED 227
           PS     PC    +   T+  N       S+ + E     SD +  EE    + E+E  D
Sbjct: 193 PSSANPPPCTTTTVPTSTTARNCTQPCTSSSSSGEESHSESDDDEDEEEEEEDDEEEEID 252

Query: 226 VETKELRRNGATEA 185
           V T E RRN + ++
Sbjct: 253 VVTVEKRRNSSNKS 266

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>PTMA_PONPY (Q5R790) Prothymosin alpha [Contains: Thymosin alpha]|
          Length = 109

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 343 NSRCAKLDSTENEEVYEKSSDAEA-AEEIWAGETEDEAEDVETKELRRNGATEAACLRGR 167
           N R    +   NEE  E+ +D E   EE   GE E+E E+ + +E   +   EA    G+
Sbjct: 28  NGRDVPANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGK 87

Query: 166 TAADGE 149
            AA+ +
Sbjct: 88  RAAEDD 93

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>RL17_BACHD (O50635) 50S ribosomal protein L17|
          Length = 120

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 399 RLGRPADQRKALLRGLTTQLLKHGRIKT 482
           +LGR +  RKALLR L T L+ + RI+T
Sbjct: 5   KLGRDSAARKALLRDLATDLIINERIET 32

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>IRX3_MOUSE (P81067) Iroquois-class homeodomain protein IRX-3 (Iroquois|
           homeobox protein 3) (Homeodomain protein IRXB1)
          Length = 507

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -2

Query: 313 ENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTAADGEGRSAG 134
           EN+  +   S  +     +  E E+E E+ + +E +R    E   L GR    G GR AG
Sbjct: 191 ENKMTWAPRSRTDEEGNAYGSEREEEDEEEDEEESKRELEMEEEELAGRGGGHG-GRGAG 249

Query: 133 SAARRESM 110
              R E +
Sbjct: 250 RRRRDEEI 257

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>PTMA_HUMAN (P06454) Prothymosin alpha [Contains: Thymosin alpha-1]|
          Length = 110

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 319 STENEEVYEKSSDAEA-AEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTAADGE 149
           + ENEE  E+ +D E   EE   GE E+E E+ + +E   +   EA    G+ AA+ +
Sbjct: 37  NAENEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDD 94

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>RL17_HAEIN (P44355) 50S ribosomal protein L17|
          Length = 128

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH K   +L R +  R+A+ R L + L+ H  IKT
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNLASALVSHEIIKT 36

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>RL17_XANCP (Q9Z3E6) 50S ribosomal protein L17|
          Length = 127

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH K   +  R +  R+A+ R +   L KH  IKT
Sbjct: 1   MRHQKSGRKFNRTSAHREAMFRNMAASLFKHELIKT 36

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>BRD2_HUMAN (P25440) Bromodomain-containing protein 2 (RING3 protein) (O27.1.1)|
          Length = 801

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -2

Query: 355 TSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           T+MP         + +EE   +SS  E  EE    E E+E+E  +++E R +   E
Sbjct: 467 TAMPPGLAKSSSESSSEESSSESSSEEEEEEDEEDEEEEESESSDSEEERAHRLAE 522

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>DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx)|
          Length = 739

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -2

Query: 361 PRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           P TS   +     D  +++E  E+S + E  EE     TEDE ED+E  +  + G  E
Sbjct: 434 PTTSKAETDDDDDDDDDDDEDNEESEEEEEEEEEEKEATEDEDEDLEQLQEDQGGDEE 491

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>V_RINDR (Q03340) Nonstructural protein V|
          Length = 299

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 328 KLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEA 185
           K++  E+ +     S A+   E+W G+ E E  DV++ E    G+  A
Sbjct: 119 KVEGVEDADSILVQSGADDGVEVWGGDEESENSDVDSGEPDPEGSAPA 166

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>V_RINDK (P60169) Nonstructural protein V|
          Length = 299

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 328 KLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEA 185
           K++  E+ +     S A+   E+W G+ E E  DV++ E    G+  A
Sbjct: 119 KVEGVEDADSILVQSGADDGVEVWGGDEESENSDVDSGEPDPEGSAPA 166

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>SEM6B_HUMAN (Q9H3T3) Semaphorin-6B precursor (Semaphorin Z) (Sema Z)|
          Length = 888

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 412 GLPSLGMRFPCLIANILPRTSMPNSRCAKLDSTENEEVYE-KSSDAEAAEEIWAGETEDE 236
           G+ SLG R   L     P  S+P S     D T+   V+E +  + ++ E IW    ED+
Sbjct: 310 GVVSLGGRPVVLAVFSTPSNSIPGSAVCAFDLTQVAAVFEGRFREQKSPESIWTPVPEDQ 369

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>RFCL_PYRKO (Q5JHP1) Replication factor C large subunit (RFC large subunit)|
           (Clamp loader large subunit)
          Length = 499

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 307 EEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEA 185
           +E   +   AE  E + AGE E+E E+VE +EL      EA
Sbjct: 427 KEAERRVEAAEEEETMEAGEPEEELEEVEEEELTEEELEEA 467

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>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)|
          Length = 1411

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 22/87 (25%), Positives = 39/87 (44%)
 Frame = -2

Query: 373 ANILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGA 194
           A +LP  + P     K +  E+ E  E+ SD+E A    A   + +    +T+      A
Sbjct: 663 APVLPGKTGPTVTQVKAEKQEDSESSEEESDSEEAA---ASPAQVKTSVKKTQAKANPAA 719

Query: 193 TEAACLRGRTAADGEGRSAGSAARRES 113
             A   +G  +A G+  +A + A++ S
Sbjct: 720 ARAPSAKGTISAPGKVVTAAAQAKQRS 746

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>MYT1L_HUMAN (Q9UL68) Myelin transcription factor 1-like protein (MyT1L protein)|
           (MyT1-L)
          Length = 1186

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 322 DSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTAADGE 149
           D  E EE+ E+  D +   E    E E+E E+ E +E   N   +  C   R   D E
Sbjct: 128 DREEEEEIEEEDEDDDEDGEDVEDEEEEEEEEEEEEEEEENEDHQMNCHNTRIMQDTE 185

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>PHOSP_RINDR (Q03335) Phosphoprotein (Protein P)|
          Length = 507

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 328 KLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEA 185
           K++  E+ +     S A+   E+W G+ E E  DV++ E    G+  A
Sbjct: 119 KVEGVEDADSILVQSGADDGVEVWGGDEESENSDVDSGEPDPEGSAPA 166

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>PHOSP_RINDK (P35945) Phosphoprotein (Protein P)|
          Length = 507

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 328 KLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEA 185
           K++  E+ +     S A+   E+W G+ E E  DV++ E    G+  A
Sbjct: 119 KVEGVEDADSILVQSGADDGVEVWGGDEESENSDVDSGEPDPEGSAPA 166

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>RL17_SHIFL (P0AG47) 50S ribosomal protein L17|
          Length = 127

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH K   +L R +  R+A+ R +   L++H  IKT
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKT 36

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>RL17_ECOLI (P0AG44) 50S ribosomal protein L17|
          Length = 127

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH K   +L R +  R+A+ R +   L++H  IKT
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKT 36

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>RL17_ECOL6 (P0AG45) 50S ribosomal protein L17|
          Length = 127

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH K   +L R +  R+A+ R +   L++H  IKT
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKT 36

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>RL17_ECO57 (P0AG46) 50S ribosomal protein L17|
          Length = 127

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH K   +L R +  R+A+ R +   L++H  IKT
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKT 36

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>IF4G_SCHPO (Q10475) Eukaryotic translation initiation factor 4 gamma|
           (eIF-4-gamma) (eIF-4G)
          Length = 1403

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = -2

Query: 331 AKLDSTENEEVYEKSSDAEAAEEIWAGETED----EAEDVETKELRRNGATEAACLRGRT 164
           A+L++ EN +   +      AEE    E E+    EAE+   +E   N   EA     R 
Sbjct: 553 ARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKRE 612

Query: 163 AADGEGRSAGSAARRES 113
           A +   R A   A+RE+
Sbjct: 613 AEEKAKREAEEKAKREA 629

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>MBB1A_HUMAN (Q9BQG0) Myb-binding protein 1A|
          Length = 1328

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -2

Query: 379 LIANIL-PRTSMP-NSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELR 206
           LI ++L P TS   N R    D ++   +      +E  E+  + E+E+E+E  E++E  
Sbjct: 688 LILDVLNPETSEDENDRVVVTDDSDERRLKGAEDKSEEGEDNRSSESEEESEGEESEEEE 747

Query: 205 RNG 197
           R+G
Sbjct: 748 RDG 750

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>PP2CG_BOVIN (P79126) Protein phosphatase 2C isoform gamma (EC 3.1.3.16)|
           (PP2C-gamma) (Protein phosphatase magnesium-dependent 1
           gamma) (Protein phosphatase 1B) (Magnesium-dependent
           calcium inhibitable phosphatase) (MCPP)
          Length = 543

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = -2

Query: 364 LPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVE----TKELRRNG 197
           LPR     S+  +    E++E  E+  D+E   E   G + +EAE+ E    T+E   + 
Sbjct: 248 LPRVD--KSKFFEDSEDESDEAEEEEEDSEECSEEEDGYSSEEAENEEDEDDTEEAEEDD 305

Query: 196 ATEAACLRGRTAADGEGRSAGSAA 125
             E   + G    +  G  +G+ A
Sbjct: 306 EEEEMMVPGMEGKEEPGSDSGTTA 329

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>CCNE_DROME (P54733) G1/S-specific cyclin-E (DmCycE)|
          Length = 709

 Score = 26.2 bits (56), Expect(2) = 7.1
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = -1

Query: 482 SLYPPVLQQLCGQPTQECFPLICRPAE-----PRNALPMPHCQYPSTDINAKQS 336
           S+Y   +  + GQ TQE   +   PAE     P + LP      PS D  +KQ+
Sbjct: 153 SVYTSPVVSVDGQSTQELLSIRSSPAEDLSEAPHSPLPDSPDSPPSPDRGSKQT 206



 Score = 21.2 bits (43), Expect(2) = 7.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 316 TENEEVYEKSSDAEAAEEIWAGETEDEAEDVE 221
           TE++++ + S +  + +E    + E+E +DVE
Sbjct: 227 TEDDDLLDDSCEDYSYDEDDEDDVEEEDDDVE 258

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>YAK1_SCHPO (Q09915) Hypothetical protein C1F7.01c in chromosome I|
          Length = 1365

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 322 DSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRR 203
           D+ EN+   E ++D EA  ++  G   ++ ED   +E+RR
Sbjct: 48  DNDENDSSEESATDEEAERQVREGFIVEDEEDEVPQEIRR 87

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>TNNT2_RABIT (P09741) Troponin T, cardiac muscle (TnTc) (Cardiac muscle troponin|
           T) (cTnT)
          Length = 300

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -2

Query: 322 DSTENEEVYEKSSDAE---AAEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTAADG 152
           D  E  E YE+  +AE   A EE W  E EDE E  E +E    G  EA      T A+ 
Sbjct: 2   DLEEVVEEYEEEQEAEEAAAEEEDWR-EDEDEQEAGEEEE--AGGGREAEAETEETQAEE 58

Query: 151 EGR 143
           +G+
Sbjct: 59  DGQ 61

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>TRF5_ASHGO (Q9HFW3) Topoisomerase 1-related protein TRF5|
          Length = 626

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -2

Query: 322 DSTENEEVYEKSSDAEAAEE--IWAGETEDEAEDVETKELRRNGATEAACLRGRTAA 158
           DS E+E  YE  + AEA E+  I   E ED A   ETK +            G  AA
Sbjct: 71  DSAEHENKYETLAVAEADEKEVILLDEEEDTAMTTETKGVHAEETANVTGAEGVNAA 127

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>RL17_PSEAE (O52761) 50S ribosomal protein L17|
          Length = 129

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 375 MRHGKRIPRLGRPADQRKALLRGLTTQLLKHGRIKT 482
           MRH K    L R +  RKA+ + +   L +H  IKT
Sbjct: 1   MRHRKSGRHLSRTSAHRKAMFQNMAVSLFEHELIKT 36

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>DAXX_RAT (Q8VIB2) Death domain-associated protein 6 (Daxx)|
          Length = 731

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 316 TENEEVYEKSSDAEAAEEIWAGE-TEDEAEDVE 221
           TE+EE  E+S D E  EE    E TEDE ED+E
Sbjct: 432 TEDEEDDEESDDEEEEEEEEEEEATEDEDEDLE 464

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>EPN4_MOUSE (Q99KN9) Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin)|
          Length = 631

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = -2

Query: 331 AKLDSTENEEVYEKSSDAEAAEEIWAG-----ETEDEAEDVETKELRRNGATEAACLR-G 170
           +K    + E+  E+ SD++  ++   G     E +DE E V TK +    ATE    R  
Sbjct: 225 SKFRRKDREDSPERCSDSDEEKKARRGRSPKGEFKDEEETVTTKHIHITQATETTTTRHK 284

Query: 169 RTAADGEGRSAGSAA 125
           RTA   +    G+AA
Sbjct: 285 RTANPSKTIDLGAAA 299

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>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 331  AKLDSTENE-EVYEKSSDAEAAEEIWAGETEDEAEDVETKE 212
            A+ D+ E E E   +S D EA E    GE + E+EDVET E
Sbjct: 1936 AEGDAQEAEGEAQPESEDVEAPEA--EGEAQPESEDVETPE 1974

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>NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)|
          Length = 2440

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
 Frame = -2

Query: 316 TENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGAT--------------EAAC 179
           ++ E+V EK  D     E    E +DE E  E ++ + N                 E A 
Sbjct: 509 SQEEKVEEKEEDKAEKTEKKEEEKKDEEEKDEKEDSKENTKEKDKIDGTAEETEEREQAT 568

Query: 178 LRGRTAADGEGRSAGSAAR 122
            RGR  A+ +GR  G   R
Sbjct: 569 PRGRKTANSQGRRKGRITR 587

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>IWS1_RAT (Q3SWT4) IWS1-like protein|
          Length = 764

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = -2

Query: 316 TENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATEAACLRGRTAADGEGRSA 137
           +ENE V+++ SD+E  EE+  G   D  ++   K    +  TE       + +D E    
Sbjct: 108 SENEAVHQQGSDSE-KEELLNGHASDSEKEEGRKHAASDSETEDTLQPQGSESDSEDPPR 166

Query: 136 GSAARRES 113
             A+  ES
Sbjct: 167 PQASDSES 174

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>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT|
           motif-binding factor) (AT-binding transcription factor
           1)
          Length = 3726

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 328 KLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKE 212
           K++  E EE  E+  + E AEE    E E+E E+ E  +
Sbjct: 456 KVEPAEEEEAEEEEEEEEEAEEEEEEEEEEEEEEEEASK 494

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>DPO3B_STAAW (P0A023) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 377

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = -2

Query: 367 ILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           I PRT++P     K+D+ E+ EV    SD+E + EI   +T D  + V   E      T 
Sbjct: 22  ISPRTTLPILTGIKIDAKEH-EVILTGSDSEISIEITIPKTVDGEDIVNISE------TG 74

Query: 187 AACLRGRTAAD 155
           +  L GR   D
Sbjct: 75  SVVLPGRFFVD 85

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>DPO3B_STAAU (P0A024) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 377

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = -2

Query: 367 ILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           I PRT++P     K+D+ E+ EV    SD+E + EI   +T D  + V   E      T 
Sbjct: 22  ISPRTTLPILTGIKIDAKEH-EVILTGSDSEISIEITIPKTVDGEDIVNISE------TG 74

Query: 187 AACLRGRTAAD 155
           +  L GR   D
Sbjct: 75  SVVLPGRFFVD 85

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>DPO3B_STAAS (Q6GD88) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 377

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = -2

Query: 367 ILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           I PRT++P     K+D+ E+ EV    SD+E + EI   +T D  + V   E      T 
Sbjct: 22  ISPRTTLPILTGIKIDAKEH-EVILTGSDSEISIEITIPKTVDGEDIVNISE------TG 74

Query: 187 AACLRGRTAAD 155
           +  L GR   D
Sbjct: 75  SVVLPGRFFVD 85

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>DPO3B_STAAR (Q6GKU3) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 377

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = -2

Query: 367 ILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           I PRT++P     K+D+ E+ EV    SD+E + EI   +T D  + V   E      T 
Sbjct: 22  ISPRTTLPILTGIKIDAKEH-EVILTGSDSEISIEITIPKTVDGEDIVNISE------TG 74

Query: 187 AACLRGRTAAD 155
           +  L GR   D
Sbjct: 75  SVVLPGRFFVD 85

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>DPO3B_STAAN (P99103) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 377

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = -2

Query: 367 ILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           I PRT++P     K+D+ E+ EV    SD+E + EI   +T D  + V   E      T 
Sbjct: 22  ISPRTTLPILTGIKIDAKEH-EVILTGSDSEISIEITIPKTVDGEDIVNISE------TG 74

Query: 187 AACLRGRTAAD 155
           +  L GR   D
Sbjct: 75  SVVLPGRFFVD 85

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>DPO3B_STAAM (P0A022) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 377

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = -2

Query: 367 ILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           I PRT++P     K+D+ E+ EV    SD+E + EI   +T D  + V   E      T 
Sbjct: 22  ISPRTTLPILTGIKIDAKEH-EVILTGSDSEISIEITIPKTVDGEDIVNISE------TG 74

Query: 187 AACLRGRTAAD 155
           +  L GR   D
Sbjct: 75  SVVLPGRFFVD 85

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>DPO3B_STAAC (Q5HJZ4) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 377

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = -2

Query: 367 ILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKELRRNGATE 188
           I PRT++P     K+D+ E+ EV    SD+E + EI   +T D  + V   E      T 
Sbjct: 22  ISPRTTLPILTGIKIDAKEH-EVILTGSDSEISIEITIPKTVDGEDIVNISE------TG 74

Query: 187 AACLRGRTAAD 155
           +  L GR   D
Sbjct: 75  SVVLPGRFFVD 85

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>NCOR1_XENTR (Q4KKX4) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2494

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
 Frame = -2

Query: 388 FPCLIANILPRTSMPNSRCAKLDSTENEEVYEKSSDAEAAEEIWAGETEDEAEDVETKEL 209
           F  L+    P+    N +     + E +E+ EK  + +A       E   E E+ E KE 
Sbjct: 479 FKALVRRNYPKRRGRNQQQITRPAQEEKEI-EKVEEEKAERNDKKEEERREEEEKEEKEE 537

Query: 208 RRNGAT-------------EAACLRGRTAADGEGRSAGSAAR 122
            R+G               E +  RGR  A+ +GR  G   R
Sbjct: 538 LRDGTKDRTDAIAEDGEDKEQSTPRGRKTANSQGRRKGRITR 579

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>EPN4_HUMAN (Q14677) Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin)|
           (Clathrin-interacting protein localized in the
           trans-Golgi region) (Clint)
          Length = 625

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = -2

Query: 331 AKLDSTENEEVYEKSSDAEAAEEIWAG-----ETEDEAEDVETKELRRNGATEAACLR-G 170
           +K    + E+  E+ SD++  ++   G     E +DE E V TK +    ATE    R  
Sbjct: 217 SKFRRKDREDSPERCSDSDEEKKARRGRSPKGEFKDEEETVTTKHIHITQATETTTTRHK 276

Query: 169 RTAADGEGRSAGSAA 125
           RTA   +    G+AA
Sbjct: 277 RTANPSKTIDLGAAA 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,882,097
Number of Sequences: 219361
Number of extensions: 557256
Number of successful extensions: 2831
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2813
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result