ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast44b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475585.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 888 Score = 371 bits (187), Expect = 1e-99 Identities = 278/308 (90%), Gaps = 9/308 (2%) Strand = Plus / Plus Query: 100 tgcgcgcggcggctgccgaagcggatcatcctggtgcggcacggcgagagccaggggaac 159 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 25 tgcgcgcggcggctcccgaagcggatcatcctggtgcgccacggcgagagccaggggaac 84 Query: 160 ctcgacatgtcggcctactccaccacgccggactaccgcatcccgctgacgccgcgcggg 219 ||||||||||| |||||| |||||||||| ||||||||||||||||| || |||| ||| Sbjct: 85 ctcgacatgtccgcctacaccaccacgcccgactaccgcatcccgctcaccccgctcggc 144 Query: 220 gtcgagcaggcgcgcgccgccggccggggcatcctcgacgtggtctcgtccggggccccc 279 ||||| ||||| ||||||||||| ||||||||||||||| ||||| |||| || Sbjct: 145 gtcgaccaggcccgcgccgccgggaagggcatcctcgacgtcgtctcctccg------cc 198 Query: 280 gacgccaactggaaggtctacttctacgtctccccctacgagcgcacccgggccaccctg 339 | |||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 199 g---ccaactggaaggtctacttctacgtctccccctacgagcgcacccgcgccacgctc 255 Query: 340 cgcgggatcggcgccgccttcccgcgccaccgcgtcatcggcgcccgcgaggagtgccgc 399 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 256 cgcgagatcggcgccgccttcccccgccaccgcgtcatcggcgcccgcgaggagtgccgc 315 Query: 400 gtccgcga 407 |||||||| Sbjct: 316 gtccgcga 323
>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04, complete sequence Length = 133271 Score = 371 bits (187), Expect = 1e-99 Identities = 278/308 (90%), Gaps = 9/308 (2%) Strand = Plus / Plus Query: 100 tgcgcgcggcggctgccgaagcggatcatcctggtgcggcacggcgagagccaggggaac 159 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 15962 tgcgcgcggcggctcccgaagcggatcatcctggtgcgccacggcgagagccaggggaac 16021 Query: 160 ctcgacatgtcggcctactccaccacgccggactaccgcatcccgctgacgccgcgcggg 219 ||||||||||| |||||| |||||||||| ||||||||||||||||| || |||| ||| Sbjct: 16022 ctcgacatgtccgcctacaccaccacgcccgactaccgcatcccgctcaccccgctcggc 16081 Query: 220 gtcgagcaggcgcgcgccgccggccggggcatcctcgacgtggtctcgtccggggccccc 279 ||||| ||||| ||||||||||| ||||||||||||||| ||||| |||| || Sbjct: 16082 gtcgaccaggcccgcgccgccgggaagggcatcctcgacgtcgtctcctccg------cc 16135 Query: 280 gacgccaactggaaggtctacttctacgtctccccctacgagcgcacccgggccaccctg 339 | |||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 16136 g---ccaactggaaggtctacttctacgtctccccctacgagcgcacccgcgccacgctc 16192 Query: 340 cgcgggatcggcgccgccttcccgcgccaccgcgtcatcggcgcccgcgaggagtgccgc 399 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 16193 cgcgagatcggcgccgccttcccccgccaccgcgtcatcggcgcccgcgaggagtgccgc 16252 Query: 400 gtccgcga 407 |||||||| Sbjct: 16253 gtccgcga 16260
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 371 bits (187), Expect = 1e-99 Identities = 278/308 (90%), Gaps = 9/308 (2%) Strand = Plus / Plus Query: 100 tgcgcgcggcggctgccgaagcggatcatcctggtgcggcacggcgagagccaggggaac 159 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2340362 tgcgcgcggcggctcccgaagcggatcatcctggtgcgccacggcgagagccaggggaac 2340421 Query: 160 ctcgacatgtcggcctactccaccacgccggactaccgcatcccgctgacgccgcgcggg 219 ||||||||||| |||||| |||||||||| ||||||||||||||||| || |||| ||| Sbjct: 2340422 ctcgacatgtccgcctacaccaccacgcccgactaccgcatcccgctcaccccgctcggc 2340481 Query: 220 gtcgagcaggcgcgcgccgccggccggggcatcctcgacgtggtctcgtccggggccccc 279 ||||| ||||| ||||||||||| ||||||||||||||| ||||| |||| || Sbjct: 2340482 gtcgaccaggcccgcgccgccgggaagggcatcctcgacgtcgtctcctccg------cc 2340535 Query: 280 gacgccaactggaaggtctacttctacgtctccccctacgagcgcacccgggccaccctg 339 | |||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 2340536 g---ccaactggaaggtctacttctacgtctccccctacgagcgcacccgcgccacgctc 2340592 Query: 340 cgcgggatcggcgccgccttcccgcgccaccgcgtcatcggcgcccgcgaggagtgccgc 399 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2340593 cgcgagatcggcgccgccttcccccgccaccgcgtcatcggcgcccgcgaggagtgccgc 2340652 Query: 400 gtccgcga 407 |||||||| Sbjct: 2340653 gtccgcga 2340660
>dbj|AK065644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037C13, full insert sequence Length = 1182 Score = 371 bits (187), Expect = 1e-99 Identities = 278/308 (90%), Gaps = 9/308 (2%) Strand = Plus / Plus Query: 100 tgcgcgcggcggctgccgaagcggatcatcctggtgcggcacggcgagagccaggggaac 159 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 111 tgcgcgcggcggctcccgaagcggatcatcctggtgcgccacggcgagagccaggggaac 170 Query: 160 ctcgacatgtcggcctactccaccacgccggactaccgcatcccgctgacgccgcgcggg 219 ||||||||||| |||||| |||||||||| ||||||||||||||||| || |||| ||| Sbjct: 171 ctcgacatgtccgcctacaccaccacgcccgactaccgcatcccgctcaccccgctcggc 230 Query: 220 gtcgagcaggcgcgcgccgccggccggggcatcctcgacgtggtctcgtccggggccccc 279 ||||| ||||| ||||||||||| ||||||||||||||| ||||| |||| || Sbjct: 231 gtcgaccaggcccgcgccgccgggaagggcatcctcgacgtcgtctcctccg------cc 284 Query: 280 gacgccaactggaaggtctacttctacgtctccccctacgagcgcacccgggccaccctg 339 | |||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 285 g---ccaactggaaggtctacttctacgtctccccctacgagcgcacccgcgccacgctc 341 Query: 340 cgcgggatcggcgccgccttcccgcgccaccgcgtcatcggcgcccgcgaggagtgccgc 399 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 342 cgcgagatcggcgccgccttcccccgccaccgcgtcatcggcgcccgcgaggagtgccgc 401 Query: 400 gtccgcga 407 |||||||| Sbjct: 402 gtccgcga 409
>gb|AC105262.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1489_G03, complete sequence Length = 107870 Score = 371 bits (187), Expect = 1e-99 Identities = 278/308 (90%), Gaps = 9/308 (2%) Strand = Plus / Plus Query: 100 tgcgcgcggcggctgccgaagcggatcatcctggtgcggcacggcgagagccaggggaac 159 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 68277 tgcgcgcggcggctcccgaagcggatcatcctggtgcgccacggcgagagccaggggaac 68336 Query: 160 ctcgacatgtcggcctactccaccacgccggactaccgcatcccgctgacgccgcgcggg 219 ||||||||||| |||||| |||||||||| ||||||||||||||||| || |||| ||| Sbjct: 68337 ctcgacatgtccgcctacaccaccacgcccgactaccgcatcccgctcaccccgctcggc 68396 Query: 220 gtcgagcaggcgcgcgccgccggccggggcatcctcgacgtggtctcgtccggggccccc 279 ||||| ||||| ||||||||||| ||||||||||||||| ||||| |||| || Sbjct: 68397 gtcgaccaggcccgcgccgccgggaagggcatcctcgacgtcgtctcctccg------cc 68450 Query: 280 gacgccaactggaaggtctacttctacgtctccccctacgagcgcacccgggccaccctg 339 | |||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 68451 g---ccaactggaaggtctacttctacgtctccccctacgagcgcacccgcgccacgctc 68507 Query: 340 cgcgggatcggcgccgccttcccgcgccaccgcgtcatcggcgcccgcgaggagtgccgc 399 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 68508 cgcgagatcggcgccgccttcccccgccaccgcgtcatcggcgcccgcgaggagtgccgc 68567 Query: 400 gtccgcga 407 |||||||| Sbjct: 68568 gtccgcga 68575
>gb|BT017205.1| Zea mays clone EL01N0371H09.c mRNA sequence Length = 1283 Score = 208 bits (105), Expect = 1e-50 Identities = 132/141 (93%) Strand = Plus / Plus Query: 99 gtgcgcgcggcggctgccgaagcggatcatcctggtgcggcacggcgagagccaggggaa 158 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 114 gtgcgcgcggcggctgccgaagcgcatcatcctggtgcggcacggcgagagccaggggaa 173 Query: 159 cctcgacatgtcggcctactccaccacgccggactaccgcatcccgctgacgccgcgcgg 218 ||| ||||||||||||||| | |||||||| ||||||||||||||||||||| ||| || Sbjct: 174 cctggacatgtcggcctacactaccacgcccgactaccgcatcccgctgacggcgctggg 233 Query: 219 ggtcgagcaggcgcgcgccgc 239 |||||||||||||||||||| Sbjct: 234 cgtcgagcaggcgcgcgccgc 254 Score = 159 bits (80), Expect = 9e-36 Identities = 110/120 (91%) Strand = Plus / Plus Query: 285 caactggaaggtctacttctacgtctccccctacgagcgcacccgggccaccctgcgcgg 344 |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| Sbjct: 294 caactggaaggtctacttctacgtgtccccctacgcgcgcacccgggccacgctgcgcga 353 Query: 345 gatcggcgccgccttcccgcgccaccgcgtcatcggcgcccgcgaggagtgccgcgtccg 404 | | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 354 ggtgggccgcgccttcccgcgggaccgcgtcatcggcgcccgcgaggagtgccgcgtccg 413
>ref|XM_550472.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1128 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 287 actggaaggtctacttctacgtctccccctac 318 |||||||||||||||||||||| ||||||||| Sbjct: 434 actggaaggtctacttctacgtgtccccctac 465
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 287 actggaaggtctacttctacgtctccccctac 318 |||||||||||||||||||||| ||||||||| Sbjct: 530527 actggaaggtctacttctacgtgtccccctac 530496 Score = 48.1 bits (24), Expect = 0.022 Identities = 27/28 (96%) Strand = Plus / Plus Query: 287 actggaaggtctacttctacgtctcccc 314 |||||||||||||||||||||| ||||| Sbjct: 19314504 actggaaggtctacttctacgtatcccc 19314531
>dbj|AP002805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0004I20 Length = 94135 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 287 actggaaggtctacttctacgtctccccctac 318 |||||||||||||||||||||| ||||||||| Sbjct: 7144 actggaaggtctacttctacgtgtccccctac 7113
>dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0514G12 Length = 138929 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 287 actggaaggtctacttctacgtctccccctac 318 |||||||||||||||||||||| ||||||||| Sbjct: 76035 actggaaggtctacttctacgtgtccccctac 76004
>dbj|AP006127.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT48O21, TM0211, complete sequence Length = 137303 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 299 acttctacgtctccccctacgagcgcacccg 329 ||||||||||||||||||||| ||||||||| Sbjct: 101555 acttctacgtctccccctacgcgcgcacccg 101525
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 48.1 bits (24), Expect = 0.022 Identities = 27/28 (96%) Strand = Plus / Plus Query: 287 actggaaggtctacttctacgtctcccc 314 |||||||||||||||||||||| ||||| Sbjct: 19277 actggaaggtctacttctacgtatcccc 19304
>emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055H05, complete sequence Length = 152329 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 345 gatcggcgccgccttcccgcgcc 367 ||||||||||||||||||||||| Sbjct: 112848 gatcggcgccgccttcccgcgcc 112870
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 345 gatcggcgccgccttcccgcgcc 367 ||||||||||||||||||||||| Sbjct: 8050724 gatcggcgccgccttcccgcgcc 8050746
>emb|Z95366.1|HSZ95366 H.sapiens genomic DNA fragment (clone NLMA202R) Length = 271 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Minus Query: 81 gaagcagcacgcggcggggtgcgcgcg 107 ||||||| ||||||||||||||||||| Sbjct: 255 gaagcaggacgcggcggggtgcgcgcg 229
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 210 gccgcgcggggtcgagcaggcgcgcgccgc 239 |||||||| |||||||||||| |||||||| Sbjct: 1565140 gccgcgcgtggtcgagcaggcccgcgccgc 1565111
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 tcgagcaggcgcgcgccgccgg 242 |||||||||||||||||||||| Sbjct: 269978 tcgagcaggcgcgcgccgccgg 269999
>gb|AE005766.1| Caulobacter crescentus CB15 section 92 of 359 of the complete genome Length = 10091 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 212 cgcgcggggtcgagcaggcgcgcgccgccg 241 |||||| ||||||||||| ||||||||||| Sbjct: 3959 cgcgcgcggtcgagcaggtgcgcgccgccg 3930
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 361 ccgcgccaccgcgtcatcggcg 382 |||||||||||||||||||||| Sbjct: 4357146 ccgcgccaccgcgtcatcggcg 4357125
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 cgagcaggcgcgcgccgccggc 243 |||||||||||||||||||||| Sbjct: 842633 cgagcaggcgcgcgccgccggc 842654
>ref|NM_111390.1| Arabidopsis thaliana catalytic AT3G05170 mRNA, complete cds Length = 1297 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 115 ccgaagcggatcatcctggtgcggcacgg 143 ||||||||||||||||| || |||||||| Sbjct: 190 ccgaagcggatcatccttgtacggcacgg 218
>ref|XM_466797.1| Oryza sativa (japonica cultivar-group), mRNA Length = 390 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 89 acgcggcggggtgcgcgcggcggctgccg 117 |||||||||| ||||||||||||||||| Sbjct: 208 acgcggcgggcagcgcgcggcggctgccg 180
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 caggcgcgcgccgccggccgg 246 ||||||||||||||||||||| Sbjct: 1223967 caggcgcgcgccgccggccgg 1223947
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 gcgccgccggccggggcatcc 253 ||||||||||||||||||||| Sbjct: 4150972 gcgccgccggccggggcatcc 4150992
>gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete sequence Length = 140064 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 115 ccgaagcggatcatcctggtgcggcacgg 143 ||||||||||||||||| || |||||||| Sbjct: 62763 ccgaagcggatcatccttgtacggcacgg 62791
>ref|XM_723688.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07813) partial mRNA Length = 702 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 gacggcggcggcgagccaagg 41 ||||||||||||||||||||| Sbjct: 129 gacggcggcggcgagccaagg 149
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 ggtcgagcaggcgcgcgccgccggc 243 |||||||||||| |||||||||||| Sbjct: 3359333 ggtcgagcaggctcgcgccgccggc 3359357 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 cacgcggcggggtgcgcgcgg 108 ||||||||||||||||||||| Sbjct: 2627220 cacgcggcggggtgcgcgcgg 2627240
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 gagcaggcgcgcgccgccggc 243 ||||||||||||||||||||| Sbjct: 3552591 gagcaggcgcgcgccgccggc 3552571
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 gagcaggcgcgcgccgccggc 243 ||||||||||||||||||||| Sbjct: 261620 gagcaggcgcgcgccgccggc 261640
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 212 cgcgcggggtcgagcaggcgcgcgccgccggcc 244 |||||| |||||||| |||||||||||| |||| Sbjct: 314728 cgcgcgcggtcgagctggcgcgcgccgcgggcc 314760
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 gagcaggcgcgcgccgccggc 243 ||||||||||||||||||||| Sbjct: 277597 gagcaggcgcgcgccgccggc 277617
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 212 cgcgcggggtcgagcaggcgcgcgccgccggcc 244 |||||| |||||||| |||||||||||| |||| Sbjct: 211924 cgcgcgcggtcgagctggcgcgcgccgcgggcc 211956
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 212 cgcgcggggtcgagcaggcgcgcgccgccggcc 244 |||||| |||||||| |||||||||||| |||| Sbjct: 196927 cgcgcgcggtcgagctggcgcgcgccgcgggcc 196959
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 gagcaggcgcgcgccgccggc 243 ||||||||||||||||||||| Sbjct: 242917 gagcaggcgcgcgccgccggc 242937
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 caggcgcgcgccgccggccgg 246 ||||||||||||||||||||| Sbjct: 2540040 caggcgcgcgccgccggccgg 2540020
>gb|AE011739.1| Xanthomonas axonopodis pv. citri str. 306, section 117 of 469 of the complete genome Length = 11306 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 gggtcgagcaggcgcgcgccg 238 ||||||||||||||||||||| Sbjct: 7422 gggtcgagcaggcgcgcgccg 7402
>emb|CR387110.1| Gallus gallus finished cDNA, clone ChEST472p11 Length = 604 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 ctcaccacgcgagacggcggcggcg 33 |||||| |||||||||||||||||| Sbjct: 51 ctcaccgcgcgagacggcggcggcg 27
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 211 ccgcgcggggtcgagcaggcgcgcgccgc 239 ||||||| |||||||||||| |||||||| Sbjct: 714803 ccgcgcgcggtcgagcaggcccgcgccgc 714831
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 caggcgcgcgccgccggccgg 246 ||||||||||||||||||||| Sbjct: 222951 caggcgcgcgccgccggccgg 222971
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 acgcggcggggtgcgcgcggcggctgccg 117 |||||||||| ||||||||||||||||| Sbjct: 24722842 acgcggcgggcagcgcgcggcggctgccg 24722870
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 gacggcggcggcgagccaagg 41 ||||||||||||||||||||| Sbjct: 1217960 gacggcggcggcgagccaagg 1217980
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 gcaggcgcgcgccgccggccggggc 249 ||||| ||||||||||||||||||| Sbjct: 1017590 gcaggtgcgcgccgccggccggggc 1017566
>dbj|AP004059.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1372_D06 Length = 129242 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 acgcggcggggtgcgcgcggcggctgccg 117 |||||||||| ||||||||||||||||| Sbjct: 104240 acgcggcgggcagcgcgcggcggctgccg 104268
>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1234_B11 Length = 128095 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 acgcggcggggtgcgcgcggcggctgccg 117 |||||||||| ||||||||||||||||| Sbjct: 22490 acgcggcgggcagcgcgcggcggctgccg 22518
>ref|NM_001018000.2| Homo sapiens kazrin (KIAA1026), transcript variant B, mRNA Length = 1783 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggcgcgcgccgccggccggg 247 |||||||||||||||||||| Sbjct: 94 ggcgcgcgccgccggccggg 113
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gcgccgccttcccgcgccac 369 |||||||||||||||||||| Sbjct: 2903619 gcgccgccttcccgcgccac 2903638
>gb|AY505120.1| Homo sapiens kazrin isoform B mRNA, complete cds Length = 1484 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggcgcgcgccgccggccggg 247 |||||||||||||||||||| Sbjct: 95 ggcgcgcgccgccggccggg 114
>ref|XM_367902.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07806.4) partial mRNA Length = 1401 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 cgagcaggcgcgcgccgccggccg 245 ||||||| |||||||||||||||| Sbjct: 1034 cgagcagccgcgcgccgccggccg 1057
>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0028C22, complete sequence Length = 154228 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 104 cgcggcggctgccgaagcggatcatcctggtg 135 |||||| || || ||||||||||||||||||| Sbjct: 51414 cgcggccgcggctgaagcggatcatcctggtg 51445
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gcgccgccttcccgcgccac 369 |||||||||||||||||||| Sbjct: 3945479 gcgccgccttcccgcgccac 3945498
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 gcggcggggtgcgcgcggcggctg 114 |||||| ||||||||||||||||| Sbjct: 25827468 gcggcgaggtgcgcgcggcggctg 25827445
>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence Length = 190834 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 gcggcggggtgcgcgcggcggctg 114 |||||| ||||||||||||||||| Sbjct: 17428 gcggcgaggtgcgcgcggcggctg 17451
>ref|XM_381167.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00991.1) partial mRNA Length = 2049 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gagacggcggcggcgagcca 38 |||||||||||||||||||| Sbjct: 1246 gagacggcggcggcgagcca 1227
>emb|CR734957.2|CNS0GTVG Tetraodon nigroviridis full-length cDNA Length = 1844 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 295 ttcccccgccaccgcgtcatcggc 318
>emb|CR727091.2|CNS0GNYX Tetraodon nigroviridis full-length cDNA Length = 1253 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 457 ttcccccgccaccgcgtcatcggc 480
>emb|CR726668.2|CNS0GNN6 Tetraodon nigroviridis full-length cDNA Length = 1263 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 458 ttcccccgccaccgcgtcatcggc 481
>emb|CR725013.1|CNS0GMD7 Tetraodon nigroviridis full-length cDNA Length = 1227 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 454 ttcccccgccaccgcgtcatcggc 477
>emb|CR685436.2|CNS0FRU0 Tetraodon nigroviridis full-length cDNA Length = 1947 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 420 ttcccccgccaccgcgtcatcggc 443
>emb|CR648211.2|CNS0EZ4P Tetraodon nigroviridis full-length cDNA Length = 1578 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gcgccaccgcgtcatcggcg 382 |||||||||||||||||||| Sbjct: 547 gcgccaccgcgtcatcggcg 566
>emb|AL391215.12| Human DNA sequence from clone RP11-408B19 on chromosome 1 Contains part of a novel gene (KIAA1026) and a CpG island, complete sequence Length = 120551 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggcgcgcgccgccggccggg 247 |||||||||||||||||||| Sbjct: 2058 ggcgcgcgccgccggccggg 2077
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gcgcggcggctgccgaagcg 122 |||||||||||||||||||| Sbjct: 1221022 gcgcggcggctgccgaagcg 1221041
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 agcaggcgcgcgccgccggc 243 |||||||||||||||||||| Sbjct: 2719615 agcaggcgcgcgccgccggc 2719596
>ref|XM_963803.1| PREDICTED: Tribolium castaneum similar to Autophagy-related protein 9A (APG9-like 1) (LOC657338), mRNA Length = 2260 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 ctcgacgtggtctcgtccggggcc 276 ||||||||||||||||| |||||| Sbjct: 1440 ctcgacgtggtctcgtcgggggcc 1417
>emb|X70336.1|BCACPSF1 B.campestris (ACP-SF1) gene for acyl carrier protein Length = 3955 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 295 gtctacttctacgtctccccctacgagcgcac 326 |||| ||||||||||||||| ||||| ||||| Sbjct: 3711 gtctgcttctacgtctccccttacgatcgcac 3742
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 ggtcgagcaggcgcgcgccg 238 |||||||||||||||||||| Sbjct: 90541 ggtcgagcaggcgcgcgccg 90560
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 ggtcgagcaggcgcgcgccg 238 |||||||||||||||||||| Sbjct: 203576 ggtcgagcaggcgcgcgccg 203595
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 ggtcgagcaggcgcgcgccg 238 |||||||||||||||||||| Sbjct: 4107 ggtcgagcaggcgcgcgccg 4126
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gcgccgccttcccgcgccac 369 |||||||||||||||||||| Sbjct: 3687356 gcgccgccttcccgcgccac 3687375
>gb|BC035501.2| Homo sapiens kazrin, transcript variant B, mRNA (cDNA clone MGC:20906 IMAGE:4556194), complete cds Length = 1783 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggcgcgcgccgccggccggg 247 |||||||||||||||||||| Sbjct: 94 ggcgcgcgccgccggccggg 113
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 acgagcgcacccgggccacc 336 |||||||||||||||||||| Sbjct: 340809 acgagcgcacccgggccacc 340790
>gb|U80002.1|SLU80002 Sphyraena lucasana lactate dehydrogenase-A (LDH-A) mRNA, complete cds Length = 2309 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 555 ttcccccgccaccgcgtcatcggc 578
>gb|U80001.1|SIU80001 Sphyraena idiastes lactate dehydrogenase-A (LDH-A) mRNA, complete cds Length = 2309 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 555 ttcccccgccaccgcgtcatcggc 578
>gb|U80000.1|SAU80000 Sphyraena argentea lactate dehydrogenase-A (LDH-A) mRNA, complete cds Length = 2292 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 551 ttcccccgccaccgcgtcatcggc 574
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 tcgaagcagcacgcggcggggtgc 102 ||||||||||| |||||||||||| Sbjct: 773806 tcgaagcagcaagcggcggggtgc 773783
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 104 cgcggcggctgccgaagcggatcatcctggtg 135 |||||| || || ||||||||||||||||||| Sbjct: 19724147 cgcggccgcggctgaagcggatcatcctggtg 19724178
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 gcggcggggtgcgcgcggcggctg 114 |||||| ||||||||||||||||| Sbjct: 25918777 gcggcgaggtgcgcgcggcggctg 25918754
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gcgagacggcggcggcgagc 36 |||||||||||||||||||| Sbjct: 6655736 gcgagacggcggcggcgagc 6655717
>gb|AF197928.1|AF197928 Rattus norvegicus prolyl 4-hydroxylase alpha subunit I (PHalphaI) gene, promoter region and exon 1 Length = 3072 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 gcaggcgcgcgccgccggcc 244 |||||||||||||||||||| Sbjct: 1789 gcaggcgcgcgccgccggcc 1770
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgcatcccgctgacgccgc 214 |||||||||||||||||||| Sbjct: 3837340 ccgcatcccgctgacgccgc 3837359
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 104 cgcggcggctgccgaagcggatcatcctggtg 135 |||||| || || ||||||||||||||||||| Sbjct: 69833 cgcggccgcggctgaagcggatcatcctggtg 69864
>ref|XM_310557.2| Anopheles gambiae str. PEST ENSANGP00000017324 (ENSANGG00000014835), partial mRNA Length = 2631 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 gatcatcctggtgcggcacggcga 146 ||||| |||||||||||||||||| Sbjct: 732 gatcaccctggtgcggcacggcga 755
>dbj|AK100474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093N16, full insert sequence Length = 2172 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 104 cgcggcggctgccgaagcggatcatcctggtg 135 |||||| || || ||||||||||||||||||| Sbjct: 180 cgcggccgcggctgaagcggatcatcctggtg 149
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cgccgccggccggggcatcc 253 |||||||||||||||||||| Sbjct: 805507 cgccgccggccggggcatcc 805526 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ggcgcgcgccgccggccggg 247 |||||||||||||||||||| Sbjct: 312728 ggcgcgcgccgccggccggg 312709
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 tcggcgcccgcgaggagtgccgcg 400 ||||||||||||||||| |||||| Sbjct: 2283182 tcggcgcccgcgaggagcgccgcg 2283205
>gb|AF079534.1|AF079534 Coryphopterus nicholsi lactate dehydrogenase-A (ldh-a) mRNA, complete cds Length = 1055 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 513 ttcccccgccaccgcgtcatcggc 536
>gb|AF079533.1|AF079533 Gillichthys seta lactate dehydrogenase-A (ldh-a) mRNA, complete cds Length = 1055 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 513 ttcccccgccaccgcgtcatcggc 536
>gb|AF079460.1|AF079460 Gillichthys mirabilis muscle-type lactate dehydrogenase-A (LDH-A) mRNA, complete cds Length = 1049 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttcccgcgccaccgcgtcatcggc 381 ||||| |||||||||||||||||| Sbjct: 507 ttcccccgccaccgcgtcatcggc 530
>emb|AL772137.8| Mouse DNA sequence from clone RP23-229A22 on chromosome 4, complete sequence Length = 165975 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ggcggggtgcgcgcggcggc 112 |||||||||||||||||||| Sbjct: 25450 ggcggggtgcgcgcggcggc 25469
>dbj|AB026292.1| Sphingomonas paucimobilis ligE and ligG genes for beta-etherase and glutathione S-transferase homolog, partial and complete cds Length = 1042 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cccgctgacgccgcgcgggg 220 |||||||||||||||||||| Sbjct: 951 cccgctgacgccgcgcgggg 970 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,619,562 Number of Sequences: 3902068 Number of extensions: 2619562 Number of successful extensions: 65744 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60068 Number of HSP's gapped (non-prelim): 5676 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
