ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast44a10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008979.1| Triticum aestivum clone wdk2c.pk005.k24:fis, full insert mRNA sequence Length = 1418 Score = 460 bits (232), Expect = e-126 Identities = 289/308 (93%) Strand = Plus / Plus Query: 154 agcagcacacgaggaaggcggtgggcctggcggcgcgcgacgcctccggccacctctccc 213 |||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 138 agcagcacacgaagaaggcggtgggtctggcggcgctcgacgcctccggccacctctccc 197 Query: 214 cgctcgccatcacccggaggagcactggagatgacgatgtggtgatcaagattctgtact 273 |||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||| Sbjct: 198 cgctcgccatcacccgaaggagcaccggagatgacgatgtcgtgataaagattctgtact 257 Query: 274 gtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccaggtacc 333 | |||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||| Sbjct: 258 gcgggatctgccactctgacctgcacagcatcaagaacgactggaagaacgccaagtacc 317 Query: 334 ccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgacca 393 ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 318 ccatgattcccgggcacgagatcgccggcgaggtcaccgaggtcggcaagaacgtgacca 377 Query: 394 agttcaaggccggcgaccgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcg 453 |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct: 378 agttcaaggcaggcgaccgtgtcggcgtcgggtgcatggtgaactcgtgccagtcctgcg 437 Query: 454 agagctgc 461 |||||||| Sbjct: 438 agagctgc 445 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 gtcaggatggcacccacggcg 149 ||||||||||||||||||||| Sbjct: 98 gtcaggatggcacccacggcg 118
>gb|AF472592.1| Lolium perenne cinnamyl alcohol dehydrogenase (CAD2) mRNA, complete cds Length = 1378 Score = 369 bits (186), Expect = 5e-99 Identities = 276/306 (90%) Strand = Plus / Plus Query: 156 cagcacacgaggaaggcggtgggcctggcggcgcgcgacgcctccggccacctctccccg 215 |||||||| |||||||||||||| |||||||||||||||| | ||||||||||||||||| Sbjct: 138 cagcacaccaggaaggcggtggggctggcggcgcgcgacgacgccggccacctctccccg 197 Query: 216 ctcgccatcacccggaggagcactggagatgacgatgtggtgatcaagattctgtactgt 275 ||||||||||| ||||||||||| ||||| |||||||||||||| |||||| ||||||| Sbjct: 198 ctcgccatcacacggaggagcacaggagacgacgatgtggtgataaagattttgtactgc 257 Query: 276 gggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccaggtacccc 335 || ||||||||||||||||| ||| | | |||||||| ||||||||| | |||||||| Sbjct: 258 ggaatctgccactctgacctgcacgccctgaagaacgactggaagaactcaaggtacccg 317 Query: 336 atgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaag 395 |||||||| |||||||||||||||||||||||||| ||||| |||||||| |||| |||| Sbjct: 318 atgatccccgggcacgagatcgccggcgaggtcacggaggtgggcaagaacgtgagcaag 377 Query: 396 ttcaaggccggcgaccgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcgag 455 ||||||||||||||||| | |||||||||||||||||||||||| |||| ||| |||||| Sbjct: 378 ttcaaggccggcgaccgcgtgggcgtcgggtgcatggtgaactcgtgccggtcgtgcgag 437 Query: 456 agctgc 461 |||||| Sbjct: 438 agctgc 443 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 133 ggatggcacccacggcggcggagcag 158 |||||||||||||||||||||||||| Sbjct: 100 ggatggcacccacggcggcggagcag 125
>dbj|AK099176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090E20, full insert sequence Length = 1394 Score = 278 bits (140), Expect = 2e-71 Identities = 254/292 (86%) Strand = Plus / Plus Query: 169 aggcggtgggcctggcggcgcgcgacgcctccggccacctctccccgctcgccatcaccc 228 |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 123 aggcggtggggctggcggcgcgcgactcctccggccacctctcccctttcgccatctccc 182 Query: 229 ggaggagcactggagatgacgatgtggtgatcaagattctgtactgtgggatctgccact 288 ||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||| Sbjct: 183 ggaggagcactggagatgacgatgtggcgataaagattctgttctgtggaatctgccact 242 Query: 289 ctgacctacactgcatcaagaacgaatggaagaacgccaggtaccccatgatccctgggc 348 ||||||| |||||||||||||| || |||||| || ||| ||||| | | ||||||| Sbjct: 243 ctgacctgcactgcatcaagaatgagtggaagcactccatctacccacttgttcctgggc 302 Query: 349 acgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccggcg 408 ||||||||||||| | ||| || ||||| || ||||| || |||| |||||||||||||| Sbjct: 303 acgagatcgccggtgtggtgacggaggtggggaagaacgtcaccaggttcaaggccggcg 362 Query: 409 accgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcgagagctg 460 || | | ||||| ||||||||||||||||| |||| ||| ||||||||||| Sbjct: 363 acagggtcggcgtggggtgcatggtgaactcgtgccggtcatgcgagagctg 414
>dbj|AK069040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003B20, full insert sequence Length = 1565 Score = 278 bits (140), Expect = 2e-71 Identities = 254/292 (86%) Strand = Plus / Plus Query: 169 aggcggtgggcctggcggcgcgcgacgcctccggccacctctccccgctcgccatcaccc 228 |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 245 aggcggtggggctggcggcgcgcgactcctccggccacctctcccctttcgccatctccc 304 Query: 229 ggaggagcactggagatgacgatgtggtgatcaagattctgtactgtgggatctgccact 288 ||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||| Sbjct: 305 ggaggagcactggagatgacgatgtggcgataaagattctgttctgtggaatctgccact 364 Query: 289 ctgacctacactgcatcaagaacgaatggaagaacgccaggtaccccatgatccctgggc 348 ||||||| |||||||||||||| || |||||| || ||| ||||| | | ||||||| Sbjct: 365 ctgacctgcactgcatcaagaatgagtggaagcactccatctacccacttgttcctgggc 424 Query: 349 acgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccggcg 408 ||||||||||||| | ||| || ||||| || ||||| || |||| |||||||||||||| Sbjct: 425 acgagatcgccggtgtggtgacggaggtggggaagaacgtcaccaggttcaaggccggcg 484 Query: 409 accgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcgagagctg 460 || | | ||||| ||||||||||||||||| |||| ||| ||||||||||| Sbjct: 485 acagggtcggcgtggggtgcatggtgaactcgtgccggtcatgcgagagctg 536
>dbj|AK104047.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H02, full insert sequence Length = 1416 Score = 270 bits (136), Expect = 4e-69 Identities = 253/292 (86%) Strand = Plus / Plus Query: 169 aggcggtgggcctggcggcgcgcgacgcctccggccacctctccccgctcgccatcaccc 228 |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 159 aggcggtggggctggcggcgcgcgactcctccggccacctctcccctttcgccatctccc 218 Query: 229 ggaggagcactggagatgacgatgtggtgatcaagattctgtactgtgggatctgccact 288 ||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||| Sbjct: 219 ggaggagcactggagatgacgatgtggcgataaagattctgttctgtggaatctgccact 278 Query: 289 ctgacctacactgcatcaagaacgaatggaagaacgccaggtaccccatgatccctgggc 348 ||||||| |||||||||||||| || |||||| || ||| ||||| | | ||||||| Sbjct: 279 ctgacctgcactgcatcaagaatgagtggaagcactccatctacccacttgttcctgggc 338 Query: 349 acgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccggcg 408 ||||||||||||| | ||| || ||||| || ||||| || |||| |||||||||||||| Sbjct: 339 acgagatcgccggtgtggtgacggaggtggggaagaacgtcaccaggttcaaggccggcg 398 Query: 409 accgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcgagagctg 460 || | | ||||| ||||||||||||||||| |||| ||| |||||| |||| Sbjct: 399 acagggtcggcgtggggtgcatggtgaactcgtgccggtcatgcgagggctg 450
>ref|NM_196623.1| Oryza sativa (japonica cultivar-group) putative cinnamyl alcohol dehydrogenase (OSJNBa0073D04.1), mRNA Length = 1491 Score = 194 bits (98), Expect = 2e-46 Identities = 200/234 (85%) Strand = Plus / Plus Query: 227 ccggaggagcactggagatgacgatgtggtgatcaagattctgtactgtgggatctgcca 286 |||| |||||||||||||||||||||||| ||| |||||||||| |||||| |||||||| Sbjct: 264 ccggcggagcactggagatgacgatgtggcgataaagattctgttctgtggaatctgcca 323 Query: 287 ctctgacctacactgcatcaagaacgaatggaagaacgccaggtaccccatgatccctgg 346 ||||||||| |||||||||||||| || |||||| || ||| ||||| | | ||||| Sbjct: 324 ctctgacctgcactgcatcaagaatgagtggaagcactccatctacccacttgttcctgg 383 Query: 347 gcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccgg 406 ||||||||||||||| | ||| || ||||| || ||||| || |||| |||||||||||| Sbjct: 384 gcacgagatcgccggtgtggtgacggaggtggggaagaacgtcaccaggttcaaggccgg 443 Query: 407 cgaccgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcgagagctg 460 |||| | | ||||| ||||||||||||||||| |||| ||| ||||||||||| Sbjct: 444 cgacagggtcggcgtggggtgcatggtgaactcgtgccggtcatgcgagagctg 497
>gb|AY107698.1| Zea mays PCO143419 mRNA sequence Length = 1374 Score = 153 bits (77), Expect = 6e-34 Identities = 254/313 (81%) Strand = Plus / Plus Query: 149 ggcggagcagcacacgaggaaggcggtgggcctggcggcgcgcgacgcctccggccacct 208 ||||||||||||| | ||| |||| ||| || ||||||| ||||||||||||| | | Sbjct: 150 ggcggagcagcaccggcggagggcgttggcgctcgcggcgcacgacgcctccggcgccgt 209 Query: 209 ctccccgctcgccatcacccggaggagcactggagatgacgatgtggtgatcaagattct 268 |||||| || |||| | || ||| |||||||||||||||||| | || |||| || Sbjct: 210 ctcccccatccgcatctcgcgaagggacactggagatgacgatgttgccatacagatact 269 Query: 269 gtactgtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccag 328 |||||| ||||| |||||||||||||| ||| |||||||||||| ||||||||||||| Sbjct: 270 gtactgcgggatatgccactctgacctgcacaccatcaagaacgagtggaagaacgccaa 329 Query: 329 gtaccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgt 388 ||||| | |||||||||||||||||||||| | |||||||||| |||||||| || Sbjct: 330 ctaccctgttgtccctgggcacgagatcgccgggctgatcaccgaggttggcaagaacgt 389 Query: 389 gaccaagttcaaggccggcgaccgtgcgggcgtcgggtgcatggtgaactcatgccagtc 448 || | |||||| | ||| ||| | ||||||||||||||||| ||| |||||||||| Sbjct: 390 gaagaggttcaacgtcggagacaaggttggcgtcgggtgcatggtcaacacatgccagtc 449 Query: 449 ctgcgagagctgc 461 |||| |||||||| Sbjct: 450 ctgcaagagctgc 462
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 137 bits (69), Expect = 4e-29 Identities = 90/97 (92%) Strand = Plus / Minus Query: 231 aggagcactggagatgacgatgtggtgatcaagattctgtactgtgggatctgccactct 290 ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 10350593 aggagcactggagatgatgatgtggtgataaagattctttactgtgggatctgccactcc 10350534 Query: 291 gacctacactgcatcaagaacgaatggaagaacgcca 327 ||||| ||| ||||||||||||| ||||||||||||| Sbjct: 10350533 gacctgcacagcatcaagaacgagtggaagaacgcca 10350497 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 346 ggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccg 405 |||||||||||||||||| ||| || |||| ||||||||| |||||||||||||||| || Sbjct: 10350041 ggcacgagatcgccggcgtggtgacggaggccggcaagaacgtgaccaagttcaagggcg 10349982 Query: 406 gcgaccgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcgagagctgc 461 ||||| | |||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 10349981 gcgacaaggtgggcgtcgggtgcatggtgaactcgtgccactcctgcgacagctgc 10349926 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 170 ggcggtgggcctggcggcgcgcgacgcctccggccacctctccccgctcgccatcacccg 229 ||||| ||| ||||| ||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct: 10352018 ggcggcggggctggcagcgcgcgacgcgtccggccacctctccccgctcaccatctcccg 10351959 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 gagatcgccggcgaggtcac 370 |||||||||||||||||||| Sbjct: 1751714 gagatcgccggcgaggtcac 1751695
>dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091D16 Length = 174222 Score = 137 bits (69), Expect = 4e-29 Identities = 90/97 (92%) Strand = Plus / Minus Query: 231 aggagcactggagatgacgatgtggtgatcaagattctgtactgtgggatctgccactct 290 ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 51551 aggagcactggagatgatgatgtggtgataaagattctttactgtgggatctgccactcc 51492 Query: 291 gacctacactgcatcaagaacgaatggaagaacgcca 327 ||||| ||| ||||||||||||| ||||||||||||| Sbjct: 51491 gacctgcacagcatcaagaacgagtggaagaacgcca 51455 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 346 ggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccg 405 |||||||||||||||||| ||| || |||| ||||||||| |||||||||||||||| || Sbjct: 50999 ggcacgagatcgccggcgtggtgacggaggccggcaagaacgtgaccaagttcaagggcg 50940 Query: 406 gcgaccgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcgagagctgc 461 ||||| | |||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct: 50939 gcgacaaggtgggcgtcgggtgcatggtgaactcgtgccactcctgcgacagctgc 50884 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 170 ggcggtgggcctggcggcgcgcgacgcctccggccacctctccccgctcgccatcacccg 229 ||||| ||| ||||| ||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct: 52976 ggcggcggggctggcagcgcgcgacgcgtccggccacctctccccgctcaccatctcccg 52917
>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04, complete sequence Length = 155372 Score = 123 bits (62), Expect = 5e-25 Identities = 83/90 (92%) Strand = Plus / Minus Query: 231 aggagcactggagatgacgatgtggtgatcaagattctgtactgtgggatctgccactct 290 ||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||| Sbjct: 116496 aggagcactggagatgacgatgtggcgataaagattctgttctgtggaatctgccactct 116437 Query: 291 gacctacactgcatcaagaacgaatggaag 320 ||||| |||||||||||||| || |||||| Sbjct: 116436 gacctgcactgcatcaagaatgagtggaag 116407 Score = 93.7 bits (47), Expect = 5e-16 Identities = 98/115 (85%) Strand = Plus / Minus Query: 346 ggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccg 405 |||||||||||||||| | ||| || ||||| || ||||| || |||| ||||||||||| Sbjct: 116107 ggcacgagatcgccggtgtggtgacggaggtggggaagaacgtcaccaggttcaaggccg 116048 Query: 406 gcgaccgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcgagagctg 460 ||||| | | ||||| ||||||||||||||||| |||| ||| ||||||||||| Sbjct: 116047 gcgacagggtcggcgtggggtgcatggtgaactcgtgccggtcatgcgagagctg 115993 Score = 89.7 bits (45), Expect = 7e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 169 aggcggtgggcctggcggcgcgcgacgcctccggccacctctccccgctcgccatcaccc 228 |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 120038 aggcggtggggctggcggcgcgcgactcctccggccacctctcccctttcgccatctccc 119979 Query: 229 ggagg 233 ||||| Sbjct: 119978 ggagg 119974
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 123 bits (62), Expect = 5e-25 Identities = 83/90 (92%) Strand = Plus / Minus Query: 231 aggagcactggagatgacgatgtggtgatcaagattctgtactgtgggatctgccactct 290 ||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||| Sbjct: 14791347 aggagcactggagatgacgatgtggcgataaagattctgttctgtggaatctgccactct 14791288 Query: 291 gacctacactgcatcaagaacgaatggaag 320 ||||| |||||||||||||| || |||||| Sbjct: 14791287 gacctgcactgcatcaagaatgagtggaag 14791258 Score = 93.7 bits (47), Expect = 5e-16 Identities = 98/115 (85%) Strand = Plus / Minus Query: 346 ggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccg 405 |||||||||||||||| | ||| || ||||| || ||||| || |||| ||||||||||| Sbjct: 14790958 ggcacgagatcgccggtgtggtgacggaggtggggaagaacgtcaccaggttcaaggccg 14790899 Query: 406 gcgaccgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcgagagctg 460 ||||| | | ||||| ||||||||||||||||| |||| ||| ||||||||||| Sbjct: 14790898 gcgacagggtcggcgtggggtgcatggtgaactcgtgccggtcatgcgagagctg 14790844 Score = 89.7 bits (45), Expect = 7e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 169 aggcggtgggcctggcggcgcgcgacgcctccggccacctctccccgctcgccatcaccc 228 |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 14794889 aggcggtggggctggcggcgcgcgactcctccggccacctctcccctttcgccatctccc 14794830 Query: 229 ggagg 233 ||||| Sbjct: 14794829 ggagg 14794825
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 123 bits (62), Expect = 5e-25 Identities = 83/90 (92%) Strand = Plus / Minus Query: 231 aggagcactggagatgacgatgtggtgatcaagattctgtactgtgggatctgccactct 290 ||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||| Sbjct: 14799588 aggagcactggagatgacgatgtggcgataaagattctgttctgtggaatctgccactct 14799529 Query: 291 gacctacactgcatcaagaacgaatggaag 320 ||||| |||||||||||||| || |||||| Sbjct: 14799528 gacctgcactgcatcaagaatgagtggaag 14799499 Score = 93.7 bits (47), Expect = 5e-16 Identities = 98/115 (85%) Strand = Plus / Minus Query: 346 ggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccg 405 |||||||||||||||| | ||| || ||||| || ||||| || |||| ||||||||||| Sbjct: 14799199 ggcacgagatcgccggtgtggtgacggaggtggggaagaacgtcaccaggttcaaggccg 14799140 Query: 406 gcgaccgtgcgggcgtcgggtgcatggtgaactcatgccagtcctgcgagagctg 460 ||||| | | ||||| ||||||||||||||||| |||| ||| ||||||||||| Sbjct: 14799139 gcgacagggtcggcgtggggtgcatggtgaactcgtgccggtcatgcgagagctg 14799085 Score = 89.7 bits (45), Expect = 7e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 169 aggcggtgggcctggcggcgcgcgacgcctccggccacctctccccgctcgccatcaccc 228 |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 14803130 aggcggtggggctggcggcgcgcgactcctccggccacctctcccctttcgccatctccc 14803071 Query: 229 ggagg 233 ||||| Sbjct: 14803070 ggagg 14803066
>ref|XM_473865.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1233 Score = 79.8 bits (40), Expect = 7e-12 Identities = 127/156 (81%) Strand = Plus / Plus Query: 155 gcagcacacgaggaaggcggtgggcctggcggcgcgcgacgcctccggccacctctcccc 214 |||||| ||||||||||||||||| || || |||| ||||| ||||||||||||| | || Sbjct: 51 gcagcatacgaggaaggcggtggggctcgccgcgcacgacgactccggccacctcacacc 110 Query: 215 gctcgccatcacccggaggagcactggagatgacgatgtggtgatcaagattctgtactg 274 || |||| | || |||| |||||||||||||| || | || ||| | |||||||| Sbjct: 111 catccgcatctcgcgcaggaaaactggagatgacgacgtcgctataaaggtgctgtactg 170 Query: 275 tgggatctgccactctgacctacactgcatcaagaa 310 |||||| || ||||||||||| ||| ||||||||| Sbjct: 171 tgggatttgtcactctgacctgcacaccatcaagaa 206 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 345 gggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggcc 404 |||||||||||| |||| | ||| |||||||| || ||||| ||| | | |||||||||| Sbjct: 241 gggcacgagatcaccggggtggtgaccgaggtggggaagaacgtggcgaggttcaaggcc 300 Query: 405 ggcgaccgtgcgggcgtcgggtgcatggtgaac 437 |||||| | ||||||||||||||||||||| Sbjct: 301 ggcgacgaggtcggcgtcgggtgcatggtgaac 333
>dbj|AK102452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093P08, full insert sequence Length = 1329 Score = 79.8 bits (40), Expect = 7e-12 Identities = 127/156 (81%) Strand = Plus / Plus Query: 155 gcagcacacgaggaaggcggtgggcctggcggcgcgcgacgcctccggccacctctcccc 214 |||||| ||||||||||||||||| || || |||| ||||| ||||||||||||| | || Sbjct: 97 gcagcatacgaggaaggcggtggggctcgccgcgcacgacgactccggccacctcacacc 156 Query: 215 gctcgccatcacccggaggagcactggagatgacgatgtggtgatcaagattctgtactg 274 || |||| | || |||| |||||||||||||| || | || ||| | |||||||| Sbjct: 157 catccgcatctcgcgcaggaaaactggagatgacgacgtcgctataaaggtgctgtactg 216 Query: 275 tgggatctgccactctgacctacactgcatcaagaa 310 |||||| || ||||||||||| ||| ||||||||| Sbjct: 217 tgggatttgtcactctgacctgcacaccatcaagaa 252 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 345 gggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggcc 404 |||||||||||| |||| | ||| |||||||| || ||||| ||| | | |||||||||| Sbjct: 287 gggcacgagatcaccggggtggtgaccgaggtggggaagaacgtggcgaggttcaaggcc 346 Query: 405 ggcgaccgtgcgggcgtcgggtgcatggtgaac 437 |||||| | ||||||||||||||||||||| Sbjct: 347 ggcgacgaggtcggcgtcgggtgcatggtgaac 379
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 67.9 bits (34), Expect = 3e-08 Identities = 124/154 (80%) Strand = Plus / Plus Query: 257 gatcaagattctgtactgtgggatctgccactctgacctacactgcatcaagaacgaatg 316 ||||||| | || |||||||| ||||||||| | ||||| ||| |||||||||||| || Sbjct: 13947031 gatcaaggtgctctactgtggcatctgccacaccgacctgcacatcatcaagaacgagtg 13947090 Query: 317 gaagaacgccaggtaccccatgatccctgggcacgagatcgccggcgaggtcaccgaggt 376 | ||||||| ||||||| | |||| ||||||||||||| ||||| ||||||| || Sbjct: 13947091 gggcaacgccatgtaccccgtcgtccccgggcacgagatcgtcggcgtcgtcaccggcgt 13947150 Query: 377 cggcaagaatgtgaccaagttcaaggccggcgac 410 |||| ||||| |||||||||||||||||| Sbjct: 13947151 cggcgccggcgtgacaaagttcaaggccggcgac 13947184 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 182 ggcggcgcgcgacgcctccggccacctctc 211 ||||||||| |||||||||||||||||||| Sbjct: 13929786 ggcggcgcgggacgcctccggccacctctc 13929757 Score = 50.1 bits (25), Expect = 0.006 Identities = 112/141 (79%) Strand = Plus / Plus Query: 270 tactgtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccagg 329 ||||| || ||||||||| ||||||| ||| | ||||||| || ||| ||||||| | Sbjct: 13940740 tactgcggcatctgccacactgacctgcacatcgtcaagaatgattggggcaacgccatg 13940799 Query: 330 taccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtg 389 |||||| | |||| || |||||||||| ||||| ||||||| |||||| ||| Sbjct: 13940800 taccccgtcgtccccggccacgagatcgtcggcgtcgtcaccggcgtcggcgccggcgtg 13940859 Query: 390 accaagttcaaggccggcgac 410 ||||||||||||||||||||| Sbjct: 13940860 accaagttcaaggccggcgac 13940880 Score = 50.1 bits (25), Expect = 0.006 Identities = 112/141 (79%) Strand = Plus / Minus Query: 270 tactgtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccagg 329 ||||| || ||||||||| | ||||| ||| | |||||||||| ||| ||||||| | Sbjct: 13933379 tactgcggcatctgccacaccgacctgcacgtcgtcaagaacgattggggcaacgccatg 13933320 Query: 330 taccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtg 389 |||||| | |||| || |||||||||| ||||| ||||||| |||||| ||| Sbjct: 13933319 taccccgtcgtccccggccacgagatcgtcggcgtcgtcaccggcgtcggcgccggcgtg 13933260 Query: 390 accaagttcaaggccggcgac 410 ||||||||||||||||||||| Sbjct: 13933259 accaagttcaaggccggcgac 13933239 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gtgaccaagttcaaggccggcgac 410 ||||||| |||||||||||||||| Sbjct: 13929384 gtgaccaggttcaaggccggcgac 13929361
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0435D08 Length = 148912 Score = 67.9 bits (34), Expect = 3e-08 Identities = 124/154 (80%) Strand = Plus / Plus Query: 257 gatcaagattctgtactgtgggatctgccactctgacctacactgcatcaagaacgaatg 316 ||||||| | || |||||||| ||||||||| | ||||| ||| |||||||||||| || Sbjct: 100708 gatcaaggtgctctactgtggcatctgccacaccgacctgcacatcatcaagaacgagtg 100767 Query: 317 gaagaacgccaggtaccccatgatccctgggcacgagatcgccggcgaggtcaccgaggt 376 | ||||||| ||||||| | |||| ||||||||||||| ||||| ||||||| || Sbjct: 100768 gggcaacgccatgtaccccgtcgtccccgggcacgagatcgtcggcgtcgtcaccggcgt 100827 Query: 377 cggcaagaatgtgaccaagttcaaggccggcgac 410 |||| ||||| |||||||||||||||||| Sbjct: 100828 cggcgccggcgtgacaaagttcaaggccggcgac 100861 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 182 ggcggcgcgcgacgcctccggccacctctc 211 ||||||||| |||||||||||||||||||| Sbjct: 83463 ggcggcgcgggacgcctccggccacctctc 83434 Score = 50.1 bits (25), Expect = 0.006 Identities = 112/141 (79%) Strand = Plus / Plus Query: 270 tactgtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccagg 329 ||||| || ||||||||| ||||||| ||| | ||||||| || ||| ||||||| | Sbjct: 94417 tactgcggcatctgccacactgacctgcacatcgtcaagaatgattggggcaacgccatg 94476 Query: 330 taccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtg 389 |||||| | |||| || |||||||||| ||||| ||||||| |||||| ||| Sbjct: 94477 taccccgtcgtccccggccacgagatcgtcggcgtcgtcaccggcgtcggcgccggcgtg 94536 Query: 390 accaagttcaaggccggcgac 410 ||||||||||||||||||||| Sbjct: 94537 accaagttcaaggccggcgac 94557 Score = 50.1 bits (25), Expect = 0.006 Identities = 112/141 (79%) Strand = Plus / Minus Query: 270 tactgtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccagg 329 ||||| || ||||||||| | ||||| ||| | |||||||||| ||| ||||||| | Sbjct: 87056 tactgcggcatctgccacaccgacctgcacgtcgtcaagaacgattggggcaacgccatg 86997 Query: 330 taccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtg 389 |||||| | |||| || |||||||||| ||||| ||||||| |||||| ||| Sbjct: 86996 taccccgtcgtccccggccacgagatcgtcggcgtcgtcaccggcgtcggcgccggcgtg 86937 Query: 390 accaagttcaaggccggcgac 410 ||||||||||||||||||||| Sbjct: 86936 accaagttcaaggccggcgac 86916 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gtgaccaagttcaaggccggcgac 410 ||||||| |||||||||||||||| Sbjct: 83061 gtgaccaggttcaaggccggcgac 83038
>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0650H04 Length = 134533 Score = 67.9 bits (34), Expect = 3e-08 Identities = 124/154 (80%) Strand = Plus / Plus Query: 257 gatcaagattctgtactgtgggatctgccactctgacctacactgcatcaagaacgaatg 316 ||||||| | || |||||||| ||||||||| | ||||| ||| |||||||||||| || Sbjct: 49505 gatcaaggtgctctactgtggcatctgccacaccgacctgcacatcatcaagaacgagtg 49564 Query: 317 gaagaacgccaggtaccccatgatccctgggcacgagatcgccggcgaggtcaccgaggt 376 | ||||||| ||||||| | |||| ||||||||||||| ||||| ||||||| || Sbjct: 49565 gggcaacgccatgtaccccgtcgtccccgggcacgagatcgtcggcgtcgtcaccggcgt 49624 Query: 377 cggcaagaatgtgaccaagttcaaggccggcgac 410 |||| ||||| |||||||||||||||||| Sbjct: 49625 cggcgccggcgtgacaaagttcaaggccggcgac 49658 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 182 ggcggcgcgcgacgcctccggccacctctc 211 ||||||||| |||||||||||||||||||| Sbjct: 32260 ggcggcgcgggacgcctccggccacctctc 32231 Score = 50.1 bits (25), Expect = 0.006 Identities = 112/141 (79%) Strand = Plus / Plus Query: 270 tactgtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccagg 329 ||||| || ||||||||| ||||||| ||| | ||||||| || ||| ||||||| | Sbjct: 43214 tactgcggcatctgccacactgacctgcacatcgtcaagaatgattggggcaacgccatg 43273 Query: 330 taccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtg 389 |||||| | |||| || |||||||||| ||||| ||||||| |||||| ||| Sbjct: 43274 taccccgtcgtccccggccacgagatcgtcggcgtcgtcaccggcgtcggcgccggcgtg 43333 Query: 390 accaagttcaaggccggcgac 410 ||||||||||||||||||||| Sbjct: 43334 accaagttcaaggccggcgac 43354 Score = 50.1 bits (25), Expect = 0.006 Identities = 112/141 (79%) Strand = Plus / Minus Query: 270 tactgtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccagg 329 ||||| || ||||||||| | ||||| ||| | |||||||||| ||| ||||||| | Sbjct: 35853 tactgcggcatctgccacaccgacctgcacgtcgtcaagaacgattggggcaacgccatg 35794 Query: 330 taccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtg 389 |||||| | |||| || |||||||||| ||||| ||||||| |||||| ||| Sbjct: 35793 taccccgtcgtccccggccacgagatcgtcggcgtcgtcaccggcgtcggcgccggcgtg 35734 Query: 390 accaagttcaaggccggcgac 410 ||||||||||||||||||||| Sbjct: 35733 accaagttcaaggccggcgac 35713 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gtgaccaagttcaaggccggcgac 410 ||||||| |||||||||||||||| Sbjct: 31858 gtgaccaggttcaaggccggcgac 31835
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 346 ggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccg 405 ||||||||||| |||| | ||| |||||||| || ||||| ||| | | ||||||||||| Sbjct: 87986 ggcacgagatcaccggggtggtgaccgaggtggggaagaacgtggcgaggttcaaggccg 88045 Query: 406 gcgaccgtgcgggcgtcgggtgcatggtgaac 437 ||||| | ||||||||||||||||||||| Sbjct: 88046 gcgacgaggtcggcgtcgggtgcatggtgaac 88077 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 155 gcagcacacgaggaaggcggtgggcctggcggcgcgcgacgcctccggccacctc 209 |||||| ||||||||||||||||| || || |||| ||||| ||||||||||||| Sbjct: 85713 gcagcatacgaggaaggcggtggggctcgccgcgcacgacgactccggccacctc 85767 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 237 actggagatgacgatgtggtgatcaagattctgtactgtgggatctgccactctgaccta 296 |||||||||||||| || | || ||| | |||||||||||||| || ||||||||||| Sbjct: 87316 actggagatgacgacgtcgctataaaggtgctgtactgtgggatttgtcactctgacctg 87375 Query: 297 cactgcatcaagaa 310 ||| ||||||||| Sbjct: 87376 cacaccatcaagaa 87389
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 346 ggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccg 405 ||||||||||| |||| | ||| |||||||| || ||||| ||| | | ||||||||||| Sbjct: 31105905 ggcacgagatcaccggggtggtgaccgaggtggggaagaacgtggcgaggttcaaggccg 31105964 Query: 406 gcgaccgtgcgggcgtcgggtgcatggtgaac 437 ||||| | ||||||||||||||||||||| Sbjct: 31105965 gcgacgaggtcggcgtcgggtgcatggtgaac 31105996 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 155 gcagcacacgaggaaggcggtgggcctggcggcgcgcgacgcctccggccacctc 209 |||||| ||||||||||||||||| || || |||| ||||| ||||||||||||| Sbjct: 31103632 gcagcatacgaggaaggcggtggggctcgccgcgcacgacgactccggccacctc 31103686 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 237 actggagatgacgatgtggtgatcaagattctgtactgtgggatctgccactctgaccta 296 |||||||||||||| || | || ||| | |||||||||||||| || ||||||||||| Sbjct: 31105235 actggagatgacgacgtcgctataaaggtgctgtactgtgggatttgtcactctgacctg 31105294 Query: 297 cactgcatcaagaa 310 ||| ||||||||| Sbjct: 31105295 cacaccatcaagaa 31105308 Score = 44.1 bits (22), Expect = 0.40 Identities = 70/86 (81%) Strand = Plus / Minus Query: 345 gggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggcc 404 |||||||||||| |||||| ||| ||| |||| |||| || ||| || |||||||| Sbjct: 8596920 gggcacgagatcaccggcgtggtgaccaaggtgggcaccaacgtggccgggttcaaggtg 8596861 Query: 405 ggcgaccgtgcgggcgtcgggtgcat 430 |||||||| | |||||| |||||||| Sbjct: 8596860 ggcgaccgcgtgggcgtggggtgcat 8596835
>emb|AJ291708.1|MSM291708 Mycobacterium smegmatis adhC gene for alcohol dehydrogenase, class C Length = 1900 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 330 taccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtg 389 |||||| || |||| || |||||||||||||||| |||||||||||| ||| | | || Sbjct: 639 taccccgtggtccccggtcacgagatcgccggcgtggtcaccgaggtgggctcggaggtc 698 Query: 390 accaagttcaaggccggcgaccg 412 ||||||| ||||| ||||||||| Sbjct: 699 accaagtacaaggtcggcgaccg 721
>dbj|AK067085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096I15, full insert sequence Length = 1916 Score = 58.0 bits (29), Expect = 3e-05 Identities = 113/141 (80%) Strand = Plus / Plus Query: 270 tactgtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccagg 329 ||||| || ||||||||| ||||||| ||| | ||||||| || ||| ||||||| | Sbjct: 730 tactgcggcatctgccacactgacctgcacatcgtcaagaatgattggggcaacgccatg 789 Query: 330 taccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtg 389 |||||||| |||| || |||||||||| ||||| ||||||| |||||| ||| Sbjct: 790 taccccatcgtccccggccacgagatcgtcggcgtcgtcaccggcgtcggcgccggcgtg 849 Query: 390 accaagttcaaggccggcgac 410 ||||||||||||||||||||| Sbjct: 850 accaagttcaaggccggcgac 870
>gb|AY104431.1| Zea mays PCO149657 mRNA sequence Length = 1491 Score = 56.0 bits (28), Expect = 1e-04 Identities = 100/124 (80%) Strand = Plus / Plus Query: 257 gatcaagattctgtactgtgggatctgccactctgacctacactgcatcaagaacgaatg 316 ||||||| | || ||||| |||||||||||| | ||||| ||| |||||||||||| || Sbjct: 333 gatcaaggtgctctactgcgggatctgccacaccgacctgcacgtcatcaagaacgactg 392 Query: 317 gaagaacgccaggtaccccatgatccctgggcacgagatcgccggcgaggtcaccgaggt 376 | ||||||| |||||| | |||| ||||||||||||| |||| ||| ||||| || Sbjct: 393 gcgaaacgccatgtacccagtcgtcccggggcacgagatcgtgggcgtggtgaccgacgt 452 Query: 377 cggc 380 |||| Sbjct: 453 cggc 456
>dbj|AK059858.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-B03, full insert sequence Length = 1407 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 182 ggcggcgcgcgacgcctccggccacctctc 211 ||||||||| |||||||||||||||||||| Sbjct: 148 ggcggcgcgggacgcctccggccacctctc 177 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 gtgaccaagttcaaggccggcgac 410 ||||||| |||||||||||||||| Sbjct: 353 gtgaccaggttcaaggccggcgac 376
>dbj|AK108849.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A05, full insert sequence Length = 1084 Score = 50.1 bits (25), Expect = 0.006 Identities = 112/141 (79%) Strand = Plus / Minus Query: 270 tactgtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccagg 329 ||||| || ||||||||| | ||||| ||| | |||||||||| ||| ||||||| | Sbjct: 965 tactgcggcatctgccacaccgacctgcacgtcgtcaagaacgattggggcaacgccatg 906 Query: 330 taccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtg 389 |||||| | |||| || |||||||||| ||||| ||||||| |||||| ||| Sbjct: 905 taccccgtcgtccccggccacgagatcgtcggcgtcgtcaccggcgtcggcgccggcgtg 846 Query: 390 accaagttcaaggccggcgac 410 ||||||||||||||||||||| Sbjct: 845 accaagttcaaggccggcgac 825
>dbj|AK072000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094F14, full insert sequence Length = 2015 Score = 50.1 bits (25), Expect = 0.006 Identities = 112/141 (79%) Strand = Plus / Minus Query: 270 tactgtgggatctgccactctgacctacactgcatcaagaacgaatggaagaacgccagg 329 ||||| || ||||||||| ||||||| ||| | ||||||| || ||| ||||||| | Sbjct: 1067 tactgcggcatctgccacactgacctgcacatcgtcaagaatgattggggcaacgccatg 1008 Query: 330 taccccatgatccctgggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtg 389 |||||| | |||| || |||||||||| ||||| ||||||| |||||| ||| Sbjct: 1007 taccccgtcgtccccggccacgagatcgtcggcgtcgtcaccggcgtcggcgccggcgtg 948 Query: 390 accaagttcaaggccggcgac 410 ||||||||||||||||||||| Sbjct: 947 accaagttcaaggccggcgac 927
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 50.1 bits (25), Expect = 0.006 Identities = 79/97 (81%) Strand = Plus / Plus Query: 348 cacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggccggc 407 |||||||||||||||| ||||||||||| ||| | | || ||||||| ||||| ||| Sbjct: 3441716 cacgagatcgccggcgtcgtcaccgaggtgggcgcggaggtcaccaagtacaaggtgggc 3441775 Query: 408 gaccgtgcgggcgtcgggtgcatggtgaactcatgcc 444 |||| | ||||| || |||||||||||||| |||| Sbjct: 3441776 gaccacgtcggcgtgggctgcatggtgaactcctgcc 3441812 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 acgagatcgccggcgaggtca 369 ||||||||||||||||||||| Sbjct: 284056 acgagatcgccggcgaggtca 284036 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 cacgagatcgccggcgaggt 367 |||||||||||||||||||| Sbjct: 3988683 cacgagatcgccggcgaggt 3988702
>gb|AF472591.1| Lolium perenne cinnamyl alcohol dehydrogenase (CAD1) mRNA, complete cds Length = 1325 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Plus Query: 246 gacgatgtggtgatcaagattctgtactgtgggatctgccactctgacctacactgcatc 305 ||||||||| ||||||| | || | ||| |||||||||||| ||||||| ||| |||| Sbjct: 115 gacgatgtgacgatcaaggtgctcttctgcgggatctgccacactgacctccacatcatc 174 Query: 306 aagaacga 313 |||||||| Sbjct: 175 aagaacga 182
>ref|XM_474988.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1083 Score = 44.1 bits (22), Expect = 0.40 Identities = 70/86 (81%) Strand = Plus / Plus Query: 345 gggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggcc 404 |||||||||||| |||||| ||| ||| |||| |||| || ||| || |||||||| Sbjct: 205 gggcacgagatcaccggcgtggtgaccaaggtgggcaccaacgtggccgggttcaaggtg 264 Query: 405 ggcgaccgtgcgggcgtcgggtgcat 430 |||||||| | |||||| |||||||| Sbjct: 265 ggcgaccgcgtgggcgtggggtgcat 290
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 362 cgaggtcaccgaggtcggcaag 383 |||||||||||||||||||||| Sbjct: 3455546 cgaggtcaccgaggtcggcaag 3455525
>dbj|AK099270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021L06, full insert sequence Length = 1355 Score = 44.1 bits (22), Expect = 0.40 Identities = 70/86 (81%) Strand = Plus / Plus Query: 345 gggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggcc 404 |||||||||||| |||||| ||| ||| |||| |||| || ||| || |||||||| Sbjct: 301 gggcacgagatcaccggcgtggtgaccaaggtgggcaccaacgtggccgggttcaaggtg 360 Query: 405 ggcgaccgtgcgggcgtcgggtgcat 430 |||||||| | |||||| |||||||| Sbjct: 361 ggcgaccgcgtgggcgtggggtgcat 386
>dbj|AK071484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091M10, full insert sequence Length = 1378 Score = 44.1 bits (22), Expect = 0.40 Identities = 70/86 (81%) Strand = Plus / Plus Query: 345 gggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggcc 404 |||||||||||| |||||| ||| ||| |||| |||| || ||| || |||||||| Sbjct: 304 gggcacgagatcaccggcgtggtgaccaaggtgggcaccaacgtggccgggttcaaggtg 363 Query: 405 ggcgaccgtgcgggcgtcgggtgcat 430 |||||||| | |||||| |||||||| Sbjct: 364 ggcgaccgcgtgggcgtggggtgcat 389
>emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065B15, complete sequence Length = 150007 Score = 44.1 bits (22), Expect = 0.40 Identities = 70/86 (81%) Strand = Plus / Minus Query: 345 gggcacgagatcgccggcgaggtcaccgaggtcggcaagaatgtgaccaagttcaaggcc 404 |||||||||||| |||||| ||| ||| |||| |||| || ||| || |||||||| Sbjct: 57363 gggcacgagatcaccggcgtggtgaccaaggtgggcaccaacgtggccgggttcaaggtg 57304 Query: 405 ggcgaccgtgcgggcgtcgggtgcat 430 |||||||| | |||||| |||||||| Sbjct: 57303 ggcgaccgcgtgggcgtggggtgcat 57278
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 cggcgcgcgacgcctccggcc 204 ||||||||||||||||||||| Sbjct: 586993 cggcgcgcgacgcctccggcc 586973
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 340 tccctgggcacgagatcgccggcgaggtcaccg 372 ||||||| |||||||||||||||| ||| |||| Sbjct: 3402200 tccctggccacgagatcgccggcgtggtgaccg 3402232
>emb|X63450.1|MBADH M.bovis adh gene for alcohol dehydrogenase Length = 1619 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 340 tccctgggcacgagatcgccggcgaggtcaccg 372 ||||||| |||||||||||||||| ||| |||| Sbjct: 405 tccctggccacgagatcgccggcgtggtgaccg 437
>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13 Length = 348676 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 340 tccctgggcacgagatcgccggcgaggtcaccg 372 ||||||| |||||||||||||||| ||| |||| Sbjct: 287426 tccctggccacgagatcgccggcgtggtgaccg 287458
>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 11/14 Length = 318050 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 340 tccctgggcacgagatcgccggcgaggtcaccg 372 ||||||| |||||||||||||||| ||| |||| Sbjct: 238023 tccctggccacgagatcgccggcgtggtgaccg 238055
>emb|AL583926.1|MLEPRTN10 Mycobacterium leprae strain TN complete genome; segment 10/10 Length = 269203 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 cactggagatgacgatgtggtgatc 260 ||||||||||||||||| ||||||| Sbjct: 19200 cactggagatgacgatggggtgatc 19224
>gb|L78819.1|MSGB912CS Mycobacterium leprae cosmid B912 DNA sequence Length = 44448 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 236 cactggagatgacgatgtggtgatc 260 ||||||||||||||||| ||||||| Sbjct: 43392 cactggagatgacgatggggtgatc 43368
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 345 gggcacgagatcgccggcgaggtcaccgaggtcggca 381 ||||||||| || ||||| ||||||||||||||||| Sbjct: 3260722 gggcacgagttctccggcacggtcaccgaggtcggca 3260758
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 202197 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 cgagatcgccggcgaggtcac 370 ||||||||||||||||||||| Sbjct: 146892 cgagatcgccggcgaggtcac 146912
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 ggcgaggtcaccgaggtcggc 380 ||||||||||||||||||||| Sbjct: 181353 ggcgaggtcaccgaggtcggc 181333
>ref|XM_479937.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1671 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gagatcgccggcgaggtcac 370 |||||||||||||||||||| Sbjct: 1324 gagatcgccggcgaggtcac 1343
>ref|XM_615164.2| PREDICTED: Bos taurus similar to desmocollin 2 isoform Dsc2a preproprotein (LOC535159), mRNA Length = 3326 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 agatgacgatgtggtgatca 261 |||||||||||||||||||| Sbjct: 864 agatgacgatgtggtgatca 845
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 atcgccggcgaggtcaccgaggtc 377 |||||||||| ||||||||||||| Sbjct: 2846313 atcgccggcgtggtcaccgaggtc 2846290
>gb|AE009071.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 97 of 256 of the complete sequence Length = 10788 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tcaaggccggcgaccgtgcgggcg 420 ||||||||| |||||||||||||| Sbjct: 4864 tcaaggccgccgaccgtgcgggcg 4887
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 tgcgggcgtcgggtgcatgg 432 |||||||||||||||||||| Sbjct: 4269095 tgcgggcgtcgggtgcatgg 4269076
>gb|AC003074.3| Homo sapiens PAC clone RP4-596O9 from 7, complete sequence Length = 143878 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gaatgtgaccaagttcaagg 402 |||||||||||||||||||| Sbjct: 84310 gaatgtgaccaagttcaagg 84329
>gb|AC124414.3| Mus musculus BAC clone RP24-282K24 from chromosome 12, complete sequence Length = 176443 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ctctgacctacactgcatca 306 |||||||||||||||||||| Sbjct: 97542 ctctgacctacactgcatca 97523
>emb|AJ231135.1|SOF231135 Saccharum officinarum mRNA for cinnamyl alcohol dehydrogenase Length = 1593 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 gtaccccatgatccctgggcacga 352 |||||||||| ||||||||||||| Sbjct: 369 gtaccccatggtccctgggcacga 392
>gb|AC121801.2| Mus musculus BAC clone RP23-432P18 from 14, complete sequence Length = 194612 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 atgatccctgggcacgagat 355 |||||||||||||||||||| Sbjct: 16084 atgatccctgggcacgagat 16065
>gb|BT009165.1| Triticum aestivum clone wl1n.pk0095.d1:fis, full insert mRNA sequence Length = 1414 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 345 gggcacgagatcgccggcgaggtcaccgaggtcggc 380 ||||||||||||| ||||| |||||||| |||||| Sbjct: 293 gggcacgagatcgtcggcgtcgtcaccgacgtcggc 328
>emb|X72675.1|PACINALDA P.abies mRNA for cinnamyl alcohol dehydrogenase Length = 1278 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 tactgtgggatctgccactctgac 293 |||||||| ||||||||||||||| Sbjct: 184 tactgtggaatctgccactctgac 207
>emb|AJ001926.1|PAAJ1926 Picea abies cad8 gene Length = 2294 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 tactgtgggatctgccactctgac 293 |||||||| ||||||||||||||| Sbjct: 314 tactgtggaatctgccactctgac 337
>emb|AJ001925.1|PAAJ1925 Picea abies cad7 gene Length = 2322 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 tactgtgggatctgccactctgac 293 |||||||| ||||||||||||||| Sbjct: 314 tactgtggaatctgccactctgac 337
>emb|AJ868574.1| Picea abies mRNA for cinnamyl-alcohol dehydrogenase (cad gene) Length = 1305 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 tactgtgggatctgccactctgac 293 |||||||| ||||||||||||||| Sbjct: 179 tactgtggaatctgccactctgac 202
>emb|AJ001924.1|PAAJ1924 Picea abies cad2 gene Length = 2278 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 tactgtgggatctgccactctgac 293 |||||||| ||||||||||||||| Sbjct: 299 tactgtggaatctgccactctgac 322
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 aggcggtgggcctggcggcgcgcg 192 ||||||| |||||||||||||||| Sbjct: 482032 aggcggtcggcctggcggcgcgcg 482009
>gb|AF145983.1| Picea smithiana clone 4 cinnamyl alcohol dehydrogenase (CAD) gene, partial cds Length = 1236 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 tactgtgggatctgccactctgac 293 |||||||| ||||||||||||||| Sbjct: 179 tactgtggaatctgccactctgac 202
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tcaaggccggcgaccgtgcgggcg 420 ||||||||| |||||||||||||| Sbjct: 1066492 tcaaggccgccgaccgtgcgggcg 1066515
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 agatcgccggcgaggtcacc 371 |||||||||||||||||||| Sbjct: 494106 agatcgccggcgaggtcacc 494087
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 gcacgagatcgccggcgagg 366 |||||||||||||||||||| Sbjct: 420039 gcacgagatcgccggcgagg 420020
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cggcgaggtcaccgaggtcg 378 |||||||||||||||||||| Sbjct: 6536792 cggcgaggtcaccgaggtcg 6536773
>gb|AC098809.3| Papio anubis clone RP41-201J11, complete sequence Length = 74237 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gaatgtgaccaagttcaagg 402 |||||||||||||||||||| Sbjct: 73473 gaatgtgaccaagttcaagg 73492
>gb|AC098812.3| Papio anubis clone RP41-440G22, complete sequence Length = 171720 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gaatgtgaccaagttcaagg 402 |||||||||||||||||||| Sbjct: 29171 gaatgtgaccaagttcaagg 29190
>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0009H02 Length = 155388 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 gagatcgccggcgaggtcac 370 |||||||||||||||||||| Sbjct: 34075 gagatcgccggcgaggtcac 34056
>gb|AF096929.1|AF096929 Rhodococcus erythropolis hypothetical repressor protein KstR (kstR) and 3-ketosteroid dehydrogenase (kstD1) genes, complete cds Length = 2398 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 357 gccggcgaggtcaccgaggtcggc 380 ||||||||||||||||| |||||| Sbjct: 1260 gccggcgaggtcaccgatgtcggc 1237
>gb|AY106482.1| Zea mays PCO097882 mRNA sequence Length = 1500 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 345 gggcacgagatcgccggcgaggtcaccgaggtcggc 380 ||||||||||||| ||||| |||||||| |||||| Sbjct: 406 gggcacgagatcgtcggcgtcgtcaccgacgtcggc 441
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 accccatgatccctgggcac 350 |||||||||||||||||||| Sbjct: 2281804 accccatgatccctgggcac 2281785
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ggcacgagatcgccggcgag 365 |||||||||||||||||||| Sbjct: 2653080 ggcacgagatcgccggcgag 2653061
>gb|AF010290.1|AF010290 Lolium perenne cinnamyl alcohol dehydrogenase mRNA, complete cds Length = 1382 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 gacgcctccggccacctctccccg 215 |||||| ||||||||||||||||| Sbjct: 132 gacgccaccggccacctctccccg 155
>gb|M81190.1|BOVTIIDSM Bos taurus type 2 desmocollin I and II mRNA, complete cds Length = 3145 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 agatgacgatgtggtgatca 261 |||||||||||||||||||| Sbjct: 790 agatgacgatgtggtgatca 771 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,238,181 Number of Sequences: 3902068 Number of extensions: 3238181 Number of successful extensions: 59735 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58145 Number of HSP's gapped (non-prelim): 1575 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
