ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast44a02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483250.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1974 Score = 391 bits (197), Expect = e-105 Identities = 365/421 (86%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgggggccgggtcgccggcgtggagctcgccaacctctcgctagc 60 ||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||| || Sbjct: 198 ctgcgtcgacggcggtggcggcagggtcgccggcgtggagctcgccaacttctcgctcgc 257 Query: 61 cggctacctgccctccgagctctccctgctctccgagctcgagacgctgtcgctgccggc 120 |||||||| || |||||||| || ||||| |||||||| | ||||||||| ||||| Sbjct: 258 gggctacctcccatccgagctgtcgctgctgtccgagctggtgacgctgtccctgcccta 317 Query: 121 caaccgcctctccggccagatcccggtcgccatctccgcgctgcagaagctcaccaccct 180 ||||| ||| ||||||||||||||||||||||| | ||||||||||||||| | | || Sbjct: 318 caaccagctcgccggccagatcccggtcgccatcacggcgctgcagaagctcgcggcgct 377 Query: 181 cgacctggcgcacaacttcctgtccggccagattcctgcggggattgggaggctcgcgtc 240 |||||| || |||||| |||| || |||||| |||| |||||||||||| |||||| ||| Sbjct: 378 cgacctcgcccacaacctcctctctggccaggttccggcggggattgggcggctcgtgtc 437 Query: 241 cctgtctcgcctcgatttgtcctccaaccagctcaacgggacgctgccgccgtccatcgc 300 ||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||| Sbjct: 438 gctgtcccgcctcgatttgtcctccaaccagctcaacggctcgctgccgccggcgatcgc 497 Query: 301 ggggcttccgagtctctccggcgtgctcaacctcagctacaaccattttgtcggcgggat 360 |||||||| ||||||| || || |||||||| |||||||||||||| ||||||||| Sbjct: 498 cgggcttcctcgtctctctggggttctcaacctgagctacaaccatttcaccggcgggat 557 Query: 361 cccgccggagttcggcggcattcccgtcgccgtcagccttgacctccgggggaacgacct 420 |||||||||||||||||||||||| || || || |||||||||||||| ||||||||||| Sbjct: 558 cccgccggagttcggcggcattccggtggcggtgagccttgacctccgcgggaacgacct 617 Query: 421 c 421 | Sbjct: 618 c 618
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 391 bits (197), Expect = e-105 Identities = 365/421 (86%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgggggccgggtcgccggcgtggagctcgccaacctctcgctagc 60 ||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||| || Sbjct: 25053791 ctgcgtcgacggcggtggcggcagggtcgccggcgtggagctcgccaacttctcgctcgc 25053850 Query: 61 cggctacctgccctccgagctctccctgctctccgagctcgagacgctgtcgctgccggc 120 |||||||| || |||||||| || ||||| |||||||| | ||||||||| ||||| Sbjct: 25053851 gggctacctcccatccgagctgtcgctgctgtccgagctggtgacgctgtccctgcccta 25053910 Query: 121 caaccgcctctccggccagatcccggtcgccatctccgcgctgcagaagctcaccaccct 180 ||||| ||| ||||||||||||||||||||||| | ||||||||||||||| | | || Sbjct: 25053911 caaccagctcgccggccagatcccggtcgccatcacggcgctgcagaagctcgcggcgct 25053970 Query: 181 cgacctggcgcacaacttcctgtccggccagattcctgcggggattgggaggctcgcgtc 240 |||||| || |||||| |||| || |||||| |||| |||||||||||| |||||| ||| Sbjct: 25053971 cgacctcgcccacaacctcctctctggccaggttccggcggggattgggcggctcgtgtc 25054030 Query: 241 cctgtctcgcctcgatttgtcctccaaccagctcaacgggacgctgccgccgtccatcgc 300 ||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||| Sbjct: 25054031 gctgtcccgcctcgatttgtcctccaaccagctcaacggctcgctgccgccggcgatcgc 25054090 Query: 301 ggggcttccgagtctctccggcgtgctcaacctcagctacaaccattttgtcggcgggat 360 |||||||| ||||||| || || |||||||| |||||||||||||| ||||||||| Sbjct: 25054091 cgggcttcctcgtctctctggggttctcaacctgagctacaaccatttcaccggcgggat 25054150 Query: 361 cccgccggagttcggcggcattcccgtcgccgtcagccttgacctccgggggaacgacct 420 |||||||||||||||||||||||| || || || |||||||||||||| ||||||||||| Sbjct: 25054151 cccgccggagttcggcggcattccggtggcggtgagccttgacctccgcgggaacgacct 25054210 Query: 421 c 421 | Sbjct: 25054211 c 25054211 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 10 cggcggcgggggccgggtcgccggcgtgg 38 |||||||||||||||||||| |||||||| Sbjct: 4357466 cggcggcgggggccgggtcgtcggcgtgg 4357438 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 121 caaccgcctctccggccagatcccg 145 |||||||||||||||| |||||||| Sbjct: 24373781 caaccgcctctccggcgagatcccg 24373805 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 cggcgggatcccgccggagttcgg 375 ||||||||| |||||||||||||| Sbjct: 2765457 cggcgggataccgccggagttcgg 2765480
>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0025J22 Length = 175355 Score = 391 bits (197), Expect = e-105 Identities = 365/421 (86%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgggggccgggtcgccggcgtggagctcgccaacctctcgctagc 60 ||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||| || Sbjct: 109907 ctgcgtcgacggcggtggcggcagggtcgccggcgtggagctcgccaacttctcgctcgc 109966 Query: 61 cggctacctgccctccgagctctccctgctctccgagctcgagacgctgtcgctgccggc 120 |||||||| || |||||||| || ||||| |||||||| | ||||||||| ||||| Sbjct: 109967 gggctacctcccatccgagctgtcgctgctgtccgagctggtgacgctgtccctgcccta 110026 Query: 121 caaccgcctctccggccagatcccggtcgccatctccgcgctgcagaagctcaccaccct 180 ||||| ||| ||||||||||||||||||||||| | ||||||||||||||| | | || Sbjct: 110027 caaccagctcgccggccagatcccggtcgccatcacggcgctgcagaagctcgcggcgct 110086 Query: 181 cgacctggcgcacaacttcctgtccggccagattcctgcggggattgggaggctcgcgtc 240 |||||| || |||||| |||| || |||||| |||| |||||||||||| |||||| ||| Sbjct: 110087 cgacctcgcccacaacctcctctctggccaggttccggcggggattgggcggctcgtgtc 110146 Query: 241 cctgtctcgcctcgatttgtcctccaaccagctcaacgggacgctgccgccgtccatcgc 300 ||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||| Sbjct: 110147 gctgtcccgcctcgatttgtcctccaaccagctcaacggctcgctgccgccggcgatcgc 110206 Query: 301 ggggcttccgagtctctccggcgtgctcaacctcagctacaaccattttgtcggcgggat 360 |||||||| ||||||| || || |||||||| |||||||||||||| ||||||||| Sbjct: 110207 cgggcttcctcgtctctctggggttctcaacctgagctacaaccatttcaccggcgggat 110266 Query: 361 cccgccggagttcggcggcattcccgtcgccgtcagccttgacctccgggggaacgacct 420 |||||||||||||||||||||||| || || || |||||||||||||| ||||||||||| Sbjct: 110267 cccgccggagttcggcggcattccggtggcggtgagccttgacctccgcgggaacgacct 110326 Query: 421 c 421 | Sbjct: 110327 c 110327
>ref|XM_463346.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1320 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 136 ccagatcccggtcgccatctccgcgctgcagaagctcaccaccctcgacctggcgcacaa 195 ||||||||||||||||||| | ||| ||||||||||| | | |||| |||||| ||||| Sbjct: 235 ccagatcccggtcgccatcacagcgttgcagaagctcgcggcgctcg-cctggctcacaa 177 Query: 196 cttcctgtccggccagattcctgcggggattggg 229 | |||| |||||||||||| | |||||||||||| Sbjct: 176 cctcctctccggccagatttcggcggggattggg 143
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 136 ccagatcccggtcgccatctccgcgctgcagaagctcaccaccctcgacctggcgcacaa 195 ||||||||||||||||||| | ||| ||||||||||| | | |||| |||||| ||||| Sbjct: 22039274 ccagatcccggtcgccatcacagcgttgcagaagctcgcggcgctcg-cctggctcacaa 22039216 Query: 196 cttcctgtccggccagattcctgcggggattggg 229 | |||| |||||||||||| | |||||||||||| Sbjct: 22039215 cctcctctccggccagatttcggcggggattggg 22039182 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgggggccgggtcgccggcgtggagctcgcca 47 |||||||||||||||||| ||| |||||||||||||||||| |||| Sbjct: 4300916 ctgcgtcgacggcggcggtggcaaggtcgccggcgtggagcttgcca 4300962 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 132 ccggccagatcccggtcgccatctccgcgctgcagaagctc 172 ||||||||||||||||||||||| | |||||||||||||| Sbjct: 24662834 ccggccagatcccggtcgccatcacgacgctgcagaagctc 24662794 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 7 cgacggcggcgggggccgggtcgccggcgtggagctcgccaacctctc 54 |||||||||||| ||| |||||| || |||||||||||||||| |||| Sbjct: 24662932 cgacggcggcggtggcagggtcggcgacgtggagctcgccaacttctc 24662885
>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151A10 Length = 124344 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 136 ccagatcccggtcgccatctccgcgctgcagaagctcaccaccctcgacctggcgcacaa 195 ||||||||||||||||||| | ||| ||||||||||| | | |||| |||||| ||||| Sbjct: 50787 ccagatcccggtcgccatcacagcgttgcagaagctcgcggcgctcg-cctggctcacaa 50729 Query: 196 cttcctgtccggccagattcctgcggggattggg 229 | |||| |||||||||||| | |||||||||||| Sbjct: 50728 cctcctctccggccagatttcggcggggattggg 50695
>dbj|AP003308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1129G05 Length = 132535 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 136 ccagatcccggtcgccatctccgcgctgcagaagctcaccaccctcgacctggcgcacaa 195 ||||||||||||||||||| | ||| ||||||||||| | | |||| |||||| ||||| Sbjct: 121082 ccagatcccggtcgccatcacagcgttgcagaagctcgcggcgctcg-cctggctcacaa 121024 Query: 196 cttcctgtccggccagattcctgcggggattggg 229 | |||| |||||||||||| | |||||||||||| Sbjct: 121023 cctcctctccggccagatttcggcggggattggg 120990
>ref|XM_550406.1| Oryza sativa (japonica cultivar-group), mRNA Length = 474 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 1 ctgcgtcgacggcggcgggggccgggtcgccggcgtggagctcgcca 47 |||||||||||||||||| ||| |||||||||||||||||| |||| Sbjct: 466 ctgcgtcgacggcggcggtggcaaggtcgccggcgtggagcttgcca 420
>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0052F16, complete sequence Length = 162082 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgggggccgggtcgccggcgtggagctcgcca 47 |||||||||||||||| | ||| ||||||| |||||||||||||||| Sbjct: 96741 ctgcgtcgacggcggcagtggcagggtcgctggcgtggagctcgcca 96787
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgggggccgggtcgccggcgtggagctcgcca 47 |||||||||||||||| | ||| ||||||| |||||||||||||||| Sbjct: 16305388 ctgcgtcgacggcggcagtggcagggtcgctggcgtggagctcgcca 16305434
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0666G04 Length = 141983 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgggggccgggtcgccggcgtggagctcgcca 47 |||||||||||||||||| ||| |||||||||||||||||| |||| Sbjct: 80686 ctgcgtcgacggcggcggtggcaaggtcgccggcgtggagcttgcca 80732
>ref|NM_192829.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1734 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 132 ccggccagatcccggtcgccatctccgcgctgcagaagctc 172 ||||||||||||||||||||||| | |||||||||||||| Sbjct: 530 ccggccagatcccggtcgccatcacgacgctgcagaagctc 570 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 7 cgacggcggcgggggccgggtcgccggcgtggagctcgccaacctctc 54 |||||||||||| ||| |||||| || |||||||||||||||| |||| Sbjct: 432 cgacggcggcggtggcagggtcggcgacgtggagctcgccaacttctc 479
>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1040D09 Length = 148102 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 132 ccggccagatcccggtcgccatctccgcgctgcagaagctc 172 ||||||||||||||||||||||| | |||||||||||||| Sbjct: 88797 ccggccagatcccggtcgccatcacgacgctgcagaagctc 88757 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 7 cgacggcggcgggggccgggtcgccggcgtggagctcgccaacctctc 54 |||||||||||| ||| |||||| || |||||||||||||||| |||| Sbjct: 88895 cgacggcggcggtggcagggtcggcgacgtggagctcgccaacttctc 88848
>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0407B12 Length = 148762 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 132 ccggccagatcccggtcgccatctccgcgctgcagaagctc 172 ||||||||||||||||||||||| | |||||||||||||| Sbjct: 31411 ccggccagatcccggtcgccatcacgacgctgcagaagctc 31371 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 7 cgacggcggcgggggccgggtcgccggcgtggagctcgccaacctctc 54 |||||||||||| ||| |||||| || |||||||||||||||| |||| Sbjct: 31509 cgacggcggcggtggcagggtcggcgacgtggagctcgccaacttctc 31462
>ref|XM_480327.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1287 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 10 cggcggcgggggccgggtcgccggcgtgg 38 |||||||||||||||||||| |||||||| Sbjct: 412 cggcggcgggggccgggtcgtcggcgtgg 384
>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03 Length = 183623 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 10 cggcggcgggggccgggtcgccggcgtgg 38 |||||||||||||||||||| |||||||| Sbjct: 120260 cggcggcgggggccgggtcgtcggcgtgg 120232
>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1134_B10 Length = 115074 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 10 cggcggcgggggccgggtcgccggcgtgg 38 |||||||||||||||||||| |||||||| Sbjct: 4642 cggcggcgggggccgggtcgtcggcgtgg 4614
>ref|NM_187681.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1875 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 321 gcgtgctcaacctcagctacaac 343 ||||||||||||||||||||||| Sbjct: 1319 gcgtgctcaacctcagctacaac 1341
>gb|BC028158.1| Homo sapiens olfactory receptor, family 2, subfamily L, member 13, mRNA (cDNA clone MGC:40047 IMAGE:5240594), complete cds Length = 1913 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 186 tggcgcacaacttcctgtccggccaga 212 ||||| ||||||||||||||||||||| Sbjct: 576 tggcgtacaacttcctgtccggccaga 602
>ref|NM_175911.2| Homo sapiens olfactory receptor, family 2, subfamily L, member 13 (OR2L13), mRNA Length = 1913 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 186 tggcgcacaacttcctgtccggccaga 212 ||||| ||||||||||||||||||||| Sbjct: 576 tggcgtacaacttcctgtccggccaga 602
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 321 gcgtgctcaacctcagctacaac 343 ||||||||||||||||||||||| Sbjct: 4685126 gcgtgctcaacctcagctacaac 4685104
>emb|AL513488.11| Human DNA sequence from clone RP11-132G10 on chromosome 1 Contains a 7 transmembrane receptor (rhodopsin family) pseudogene and and the OR2L13 gene for olfactory receptor, family 2, subfamily L, member 13, complete sequence Length = 50714 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 186 tggcgcacaacttcctgtccggccaga 212 ||||| ||||||||||||||||||||| Sbjct: 36484 tggcgtacaacttcctgtccggccaga 36510
>emb|CR599101.1| full-length cDNA clone CS0DF034YC07 of Fetal brain of Homo sapiens (human) Length = 1632 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 186 tggcgcacaacttcctgtccggccaga 212 ||||| ||||||||||||||||||||| Sbjct: 251 tggcgtacaacttcctgtccggccaga 277
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 321 gcgtgctcaacctcagctacaac 343 ||||||||||||||||||||||| Sbjct: 4685241 gcgtgctcaacctcagctacaac 4685219
>gb|AY105909.1| Zea mays PCO103007 mRNA sequence Length = 687 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 321 gcgtgctcaacctcagctacaac 343 ||||||||||||||||||||||| Sbjct: 421 gcgtgctcaacctcagctacaac 443
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence Length = 148894 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 321 gcgtgctcaacctcagctacaac 343 ||||||||||||||||||||||| Sbjct: 126081 gcgtgctcaacctcagctacaac 126059
>ref|XM_963931.1| PREDICTED: Tribolium castaneum similar to CG3924-PA, isoform A (LOC657473), mRNA Length = 1728 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 cggcgggggccgggtcgccggc 34 |||||||||||||||||||||| Sbjct: 215 cggcgggggccgggtcgccggc 236
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 119 gccaaccgcctctccggccagatccc 144 |||||||||||||||||| ||||||| Sbjct: 35728444 gccaaccgcctctccggcgagatccc 35728419
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_D06 Length = 102239 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 119 gccaaccgcctctccggccagatccc 144 |||||||||||||||||| ||||||| Sbjct: 89058 gccaaccgcctctccggcgagatccc 89033
>ref|NM_120267.2| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine kinase AT5G01890 mRNA, complete cds Length = 3499 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 aaccgcctctccggccagatcccgg 146 |||||||||||||||||||| |||| Sbjct: 1876 aaccgcctctccggccagattccgg 1900
>ref|XM_483121.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3315 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 121 caaccgcctctccggccagatcccg 145 |||||||||||||||| |||||||| Sbjct: 1848 caaccgcctctccggcgagatcccg 1872
>ref|XM_479008.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3330 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 352 cggcgggatcccgccggagttcggc 376 ||||||||||||||||||| ||||| Sbjct: 1845 cggcgggatcccgccggagatcggc 1869
>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence Length = 185449 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 22 ccgggtcgccggcgtggagctcgcc 46 |||||||||||||| |||||||||| Sbjct: 110871 ccgggtcgccggcgaggagctcgcc 110847
>emb|AL162351.1|ATT20L15 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project) Length = 96565 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 122 aaccgcctctccggccagatcccgg 146 |||||||||||||||||||| |||| Sbjct: 67876 aaccgcctctccggccagattccgg 67852
>gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0082N11, from chromosome 10, complete sequence Length = 127525 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/40 (90%), Gaps = 2/40 (5%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgg--gggccgggtcgccggcgtgg 38 |||||||| ||||||||| ||||||||||| |||||||| Sbjct: 112251 ctgcgtcggcggcggcggcagggccgggtcggcggcgtgg 112290
>gb|AC113339.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0047B19, from chromosome 10, complete sequence Length = 137015 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/40 (90%), Gaps = 2/40 (5%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgg--gggccgggtcgccggcgtgg 38 |||||||| ||||||||| ||||||||||| |||||||| Sbjct: 44726 ctgcgtcggcggcggcggcagggccgggtcggcggcgtgg 44765
>gb|AF424563.1|AF424563 Arabidopsis thaliana AT5g01890/T20L15_160 mRNA, complete cds Length = 3428 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 aaccgcctctccggccagatcccgg 146 |||||||||||||||||||| |||| Sbjct: 1830 aaccgcctctccggccagattccgg 1854
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 22 ccgggtcgccggcgtggagctcgcc 46 |||||||||||||| |||||||||| Sbjct: 1985561 ccgggtcgccggcgaggagctcgcc 1985537 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 cggcggcgggggccgggtcg 29 |||||||||||||||||||| Sbjct: 3030842 cggcggcgggggccgggtcg 3030823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 22 ccgggtcgccggcgtggagctcgcc 46 |||||||||||||| |||||||||| Sbjct: 2039316 ccgggtcgccggcgaggagctcgcc 2039292 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 gctcgccaacctctcgctagccgg 63 |||||||||||||||||| ||||| Sbjct: 7026829 gctcgccaacctctcgctcgccgg 7026852
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/40 (90%), Gaps = 2/40 (5%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgg--gggccgggtcgccggcgtgg 38 |||||||| ||||||||| ||||||||||| |||||||| Sbjct: 7601732 ctgcgtcggcggcggcggcagggccgggtcggcggcgtgg 7601771 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 gcgtgctcaacctcagctacaacc 344 |||| ||||||||||||||||||| Sbjct: 11468552 gcgttctcaacctcagctacaacc 11468575
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 352 cggcgggatcccgccggagttcggc 376 ||||||||||||||||||| ||||| Sbjct: 24296128 cggcgggatcccgccggagatcggc 24296104
>gb|BT004520.1| Arabidopsis thaliana At5g01890/T20L15_160 gene, complete cds Length = 2904 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 aaccgcctctccggccagatcccgg 146 |||||||||||||||||||| |||| Sbjct: 1399 aaccgcctctccggccagattccgg 1423
>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1579_C03 Length = 122851 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 352 cggcgggatcccgccggagttcggc 376 ||||||||||||||||||| ||||| Sbjct: 29321 cggcgggatcccgccggagatcggc 29297
>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E05 Length = 137364 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 352 cggcgggatcccgccggagttcggc 376 ||||||||||||||||||| ||||| Sbjct: 107679 cggcgggatcccgccggagatcggc 107655
>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686H11 Length = 135273 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 121 caaccgcctctccggccagatcccg 145 |||||||||||||||| |||||||| Sbjct: 114085 caaccgcctctccggcgagatcccg 114109
>dbj|AK120954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E10, full insert sequence Length = 2917 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 22 ccgggtcgccggcgtggagctcgcc 46 |||||||||||||| |||||||||| Sbjct: 275 ccgggtcgccggcgaggagctcgcc 251
>dbj|AK120815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014N07, full insert sequence Length = 3856 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 352 cggcgggatcccgccggagttcggc 376 ||||||||||||||||||| ||||| Sbjct: 2047 cggcgggatcccgccggagatcggc 2071
>dbj|AK119897.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-C07, full insert sequence Length = 3732 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 352 cggcgggatcccgccggagttcggc 376 ||||||||||||||||||| ||||| Sbjct: 2005 cggcgggatcccgccggagatcggc 2029
>dbj|AK110374.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-C03, full insert sequence Length = 2914 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 121 caaccgcctctccggccagatcccg 145 |||||||||||||||| |||||||| Sbjct: 1930 caaccgcctctccggcgagatcccg 1954
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/40 (90%), Gaps = 2/40 (5%) Strand = Plus / Plus Query: 1 ctgcgtcgacggcggcgg--gggccgggtcgccggcgtgg 38 |||||||| ||||||||| ||||||||||| |||||||| Sbjct: 7605931 ctgcgtcggcggcggcggcagggccgggtcggcggcgtgg 7605970 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 gcgtgctcaacctcagctacaacc 344 |||| ||||||||||||||||||| Sbjct: 11474992 gcgttctcaacctcagctacaacc 11475015
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 22 ccgggtcgccggcgtggagctcgcc 46 |||||||||||||| |||||||||| Sbjct: 2047097 ccgggtcgccggcgaggagctcgcc 2047073 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 gctcgccaacctctcgctagccgg 63 |||||||||||||||||| ||||| Sbjct: 7093296 gctcgccaacctctcgctcgccgg 7093319
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 22 ccgggtcgccggcgtggagctcgcc 46 |||||||||||||| |||||||||| Sbjct: 1985512 ccgggtcgccggcgaggagctcgcc 1985488 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 cggcggcgggggccgggtcg 29 |||||||||||||||||||| Sbjct: 3030787 cggcggcgggggccgggtcg 3030768
>emb|AL928783.4|CNS08CCD Oryza sativa chromosome 12, . BAC OSJNBa0028B04 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158885 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 22 ccgggtcgccggcgtggagctcgcc 46 |||||||||||||| |||||||||| Sbjct: 16454 ccgggtcgccggcgaggagctcgcc 16430
>ref|XM_511721.1| PREDICTED: Pan troglodytes similar to KIAA1640 protein (LOC454938), mRNA Length = 5508 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 3420 gctgcagaagctcaccaccc 3439
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 tcccgccggagttcggcggc 379 |||||||||||||||||||| Sbjct: 3722532 tcccgccggagttcggcggc 3722513
>ref|XM_480099.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2274 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 cggcgggatcccgccggagttcgg 375 ||||||||| |||||||||||||| Sbjct: 714 cggcgggataccgccggagttcgg 737
>ref|NM_196154.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0095C06.5), mRNA Length = 1935 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 gcgtgctcaacctcagctacaacc 344 |||| ||||||||||||||||||| Sbjct: 1400 gcgttctcaacctcagctacaacc 1423
>ref|XM_524713.1| PREDICTED: Pan troglodytes similar to podocan (LOC469328), mRNA Length = 2733 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 2115 gctcaacctcagctacaacc 2134
>ref|NM_153703.3| Homo sapiens podocan (PODN), mRNA Length = 3019 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1375 gctcaacctcagctacaacc 1394
>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12, complete sequence Length = 166936 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 gctcgccaacctctcgctagccgg 63 |||||||||||||||||| ||||| Sbjct: 152087 gctcgccaacctctcgctcgccgg 152110
>ref|XM_586607.2| PREDICTED: Bos taurus similar to podocan (LOC509606), mRNA Length = 1935 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1317 gctcaacctcagctacaacc 1336
>gb|BC030608.2| Homo sapiens podocan, mRNA (cDNA clone MGC:26993 IMAGE:4826932), complete cds Length = 3020 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1377 gctcaacctcagctacaacc 1396
>gb|AC109807.9| Mus musculus chromosome 1, clone RP23-433B11, complete sequence Length = 227679 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 acctcagctacaaccatttt 349 |||||||||||||||||||| Sbjct: 97997 acctcagctacaaccatttt 97978
>ref|NM_172874.2| Mus musculus podocan (Podn), mRNA Length = 3177 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1630 gctcaacctcagctacaacc 1649
>gb|BC028292.1| Homo sapiens podocan, mRNA (cDNA clone MGC:24995 IMAGE:4938380), complete cds Length = 3001 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1359 gctcaacctcagctacaacc 1378
>gb|AY539911.1| Rattus norvegicus LRRGT00160 mRNA, complete cds Length = 1932 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1317 gctcaacctcagctacaacc 1336
>gb|AC101758.6| Mus musculus chromosome 1, clone RP24-75F14, complete sequence Length = 268826 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 acctcagctacaaccatttt 349 |||||||||||||||||||| Sbjct: 179448 acctcagctacaaccatttt 179429
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cggcattcccgtcgccgtca 395 |||||||||||||||||||| Sbjct: 3027334 cggcattcccgtcgccgtca 3027353
>gb|BC064034.1| Mus musculus podocan, mRNA (cDNA clone IMAGE:1512174), partial cds Length = 1291 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 792 gctcaacctcagctacaacc 811
>gb|BC052487.1| Mus musculus podocan, mRNA (cDNA clone IMAGE:6392159), containing frame-shift errors Length = 2987 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1455 gctcaacctcagctacaacc 1474
>ref|XM_536704.2| PREDICTED: Canis familiaris similar to podocan, transcript variant 1 (LOC479564), mRNA Length = 1794 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1353 gctcaacctcagctacaacc 1372
>ref|XM_861004.1| PREDICTED: Canis familiaris similar to podocan, transcript variant 4 (LOC479564), mRNA Length = 3107 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 2666 gctcaacctcagctacaacc 2685
>gb|AY313607.1| Homo sapiens podocan protein (PODN) mRNA, complete cds Length = 2012 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1375 gctcaacctcagctacaacc 1394
>gb|AY313606.1| Mus musculus podocan protein (Podn) mRNA, complete cds Length = 3177 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1630 gctcaacctcagctacaacc 1649
>gb|AY358294.1| Homo sapiens clone DNA40982 EGEE293 (UNQ293) mRNA, complete cds Length = 3296 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1652 gctcaacctcagctacaacc 1671
>gb|BC035251.1| Homo sapiens coiled-coil domain containing 40, transcript variant 11, mRNA (cDNA clone MGC:41805 IMAGE:4838111), complete cds Length = 3493 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 1716 gctgcagaagctcaccaccc 1735
>emb|AL445183.19| Human DNA sequence from clone RP11-334A14 on chromosome 1 Contains the 5' end of the SCP2 gene for sterol carrier protein 2, a pseudogene similar to part of related RAS viral (r-ras) oncogene homolog 2 (RRAS2), a beta polypeptide tubulin family pseudogene, the PODN gene for podocan, a likely ortholog of mouse hypoxia induced gene 1 (HIG1) pseudogene, two novel genes, the SLC1A7 gene for solute carrier family 1 (glutamate transporter) member 7 and a CpG island, complete sequence Length = 193774 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 125348 gctcaacctcagctacaacc 125367
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ttcctgtccggccagattcc 216 |||||||||||||||||||| Sbjct: 105109 ttcctgtccggccagattcc 105090
>emb|AJ580915.1|SPA580915 Streptomyces parvulus Tu4055 cluster for borrelidin biosynthesis Length = 74787 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 agctcaccaccctcgacctg 187 |||||||||||||||||||| Sbjct: 56455 agctcaccaccctcgacctg 56474
>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome Length = 101016 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 cgtcgacggcggcgggggccgggt 27 ||||||||||||||| |||||||| Sbjct: 82080 cgtcgacggcggcggtggccgggt 82103
>dbj|AK056583.1| Homo sapiens cDNA FLJ32021 fis, clone NTONG1000130, weakly similar to Gallus gallus kinectin mRNA Length = 2577 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 16 gctgcagaagctcaccaccc 35
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 gcgtgctcaacctcagctacaacc 344 |||| ||||||||||||||||||| Sbjct: 52545 gcgttctcaacctcagctacaacc 52568
>ref|XM_946236.1| PREDICTED: Homo sapiens coiled-coil domain containing 40, transcript variant 17 (CCDC40), mRNA Length = 2585 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 25 gctgcagaagctcaccaccc 44
>ref|XM_942690.1| PREDICTED: Homo sapiens coiled-coil domain containing 40, transcript variant 11 (CCDC40), mRNA Length = 3461 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 1710 gctgcagaagctcaccaccc 1729
>ref|XM_946232.1| PREDICTED: Homo sapiens coiled-coil domain containing 40, transcript variant 13 (CCDC40), mRNA Length = 3925 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 227 gctgcagaagctcaccaccc 246
>ref|XM_946231.1| PREDICTED: Homo sapiens coiled-coil domain containing 40, transcript variant 12 (CCDC40), mRNA Length = 3792 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 1223 gctgcagaagctcaccaccc 1242
>ref|XM_934522.1| PREDICTED: Homo sapiens coiled-coil domain containing 40, transcript variant 10 (CCDC40), mRNA Length = 2585 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 25 gctgcagaagctcaccaccc 44
>ref|XM_930250.1| PREDICTED: Homo sapiens coiled-coil domain containing 40, transcript variant 2 (CCDC40), mRNA Length = 3461 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 1710 gctgcagaagctcaccaccc 1729
>ref|XM_934509.1| PREDICTED: Homo sapiens coiled-coil domain containing 40, transcript variant 3 (CCDC40), mRNA Length = 3925 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 227 gctgcagaagctcaccaccc 246
>ref|XM_371082.2| PREDICTED: Homo sapiens coiled-coil domain containing 40, transcript variant 1 (CCDC40), mRNA Length = 3792 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 1223 gctgcagaagctcaccaccc 1242
>dbj|AK161018.1| Mus musculus 1 day pregnant adult female mammary gland cDNA, RIKEN full-length enriched library, clone:4222402M22 product:podocan, full insert sequence Length = 3028 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1494 gctcaacctcagctacaacc 1513
>dbj|AK034987.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430070G18 product:hypothetical Leucine-rich repeat/Leucine-rich repeat, typical subtype containing protein, full insert sequence Length = 3639 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 2161 gctcaacctcagctacaacc 2180
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 aacgggacgctgccgccgtc 294 |||||||||||||||||||| Sbjct: 6904291 aacgggacgctgccgccgtc 6904272
>gb|BC094340.1| Mus musculus podocan, mRNA (cDNA clone MGC:106502 IMAGE:30609151), complete cds Length = 3262 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 1708 gctcaacctcagctacaacc 1727
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 agaagctcaccaccctcgac 184 |||||||||||||||||||| Sbjct: 8060168 agaagctcaccaccctcgac 8060187 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 cggcggcgggggccgggtcgccgg 33 ||||| |||||||||||||||||| Sbjct: 6933873 cggcgacgggggccgggtcgccgg 6933850
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 cggcggcgggggccgggtcgccgg 33 |||||||||||||| ||||||||| Sbjct: 820599 cggcggcgggggccaggtcgccgg 820622
>gb|AC087741.18| Homo sapiens chromosome 17, clone RP11-334C17, complete sequence Length = 182016 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 128498 gctgcagaagctcaccaccc 128479
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tctccggcgtgctcaacctc 334 |||||||||||||||||||| Sbjct: 7091975 tctccggcgtgctcaacctc 7091994 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 gagttcggcggcattcccgtcgcc 391 ||||||| |||||||||||||||| Sbjct: 2901905 gagttcgacggcattcccgtcgcc 2901882
>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015A04 Length = 152058 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 cggcgggatcccgccggagttcgg 375 ||||||||| |||||||||||||| Sbjct: 28606 cggcgggataccgccggagttcgg 28629
>dbj|AP006156.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1043F11 Length = 167137 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 aacgggacgctgccgccgtc 294 |||||||||||||||||||| Sbjct: 132186 aacgggacgctgccgccgtc 132167
>dbj|AK121005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045N14, full insert sequence Length = 2522 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 gcgtgctcaacctcagctacaacc 344 |||| ||||||||||||||||||| Sbjct: 1758 gcgttctcaacctcagctacaacc 1781
>dbj|AK120844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022M14, full insert sequence Length = 2489 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cggcggcgggggccgggtcg 29 |||||||||||||||||||| Sbjct: 1112 cggcggcgggggccgggtcg 1131
>dbj|AK120813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014M03, full insert sequence Length = 2643 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cggcggcgggggccgggtcg 29 |||||||||||||||||||| Sbjct: 1112 cggcggcgggggccgggtcg 1131
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 gccgggtcgccggcgtggagctcg 44 ||||||||||||||||| |||||| Sbjct: 70743 gccgggtcgccggcgtgtagctcg 70766
>gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.1090_M_7, complete sequence Length = 205150 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 79043 gctgcagaagctcaccaccc 79024
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cggcggcgggggccgggtcg 29 |||||||||||||||||||| Sbjct: 124001 cggcggcgggggccgggtcg 124020
>emb|AL611936.11| Mouse DNA sequence from clone RP23-40G2 on chromosome 4, complete sequence Length = 166167 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctcaacctcagctacaacc 344 |||||||||||||||||||| Sbjct: 147418 gctcaacctcagctacaacc 147399
>emb|AL713758.1|HSM803003 Homo sapiens mRNA; cDNA DKFZp434N0529 (from clone DKFZp434N0529) Length = 3962 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 233 gctgcagaagctcaccaccc 252
>dbj|AB046860.1| Homo sapiens mRNA for KIAA1640 protein, partial cds Length = 3795 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctgcagaagctcaccaccc 179 |||||||||||||||||||| Sbjct: 1229 gctgcagaagctcaccaccc 1248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,336,383 Number of Sequences: 3902068 Number of extensions: 2336383 Number of successful extensions: 68626 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 66877 Number of HSP's gapped (non-prelim): 1755 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
