ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast43h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476301.2| Oryza sativa (japonica cultivar-group), mRNA 170 1e-39
2gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete se... 170 1e-39
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 170 1e-39
4dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic D... 170 1e-39
5dbj|AK105690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 1e-39
6dbj|AK068474.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 1e-39
7gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence 103 2e-19
8ref|NM_124534.2| Arabidopsis thaliana unknown protein AT5G51550 ... 42 0.66
9emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 0.66
10gb|AY103306.1| Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, co... 42 0.66
11gb|AE011873.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 0.66
12gb|AY058883.1| Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, co... 42 0.66
13gb|AF428325.1|AF428325 Arabidopsis thaliana AT5g51550/K17N15_10 ... 42 0.66
14emb|BX821853.1|CNS0A8AB Arabidopsis thaliana Full-length cDNA Co... 42 0.66
15emb|BX832775.1|CNS0A0KF Arabidopsis thaliana Full-length cDNA Co... 42 0.66
16emb|BX831378.1|CNS0A0O9 Arabidopsis thaliana Full-length cDNA Co... 42 0.66
17gb|AY087269.1| Arabidopsis thaliana clone 33455 mRNA, complete s... 42 0.66
18dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 0.66
19gb|AY666490.1| Anas platyrhynchos voucher 1B-3367 cytochrome oxi... 40 2.6
20gb|AY666496.1| Anas platyrhynchos voucher 1B-3638 cytochrome oxi... 40 2.6
21gb|AY666221.1| Anas rubripes voucher 1B-726 cytochrome oxidase s... 40 2.6
22gb|AY666211.1| Anas rubripes voucher 1B-711 cytochrome oxidase s... 40 2.6
23gb|AY666405.1| Anas crecca voucher 1B-2590 cytochrome oxidase su... 40 2.6
24ref|XM_478424.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.6
25ref|XM_478215.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.6
26ref|XM_883530.1| Leishmania major strain Friedlin hypothetical p... 40 2.6
27emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 40 2.6
28gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 2.6
29emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete ... 40 2.6
30emb|BX640423.1| Bordetella parapertussis strain 12822, complete ... 40 2.6
31emb|BX640420.1| Bordetella pertussis strain Tohama I, complete g... 40 2.6
32gb|AE005777.1| Caulobacter crescentus CB15 section 103 of 359 of... 40 2.6
33gb|CP000249.1| Frankia sp. CcI3, complete genome 40 2.6
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
36dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
37dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
38dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
39dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
40dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
41dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
42dbj|AK121812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.6
43dbj|AK064235.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.6
44gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 2.6
45gb|AY662783.1| Pterophyllum scalare cytochrome oxidase subunit I... 40 2.6 
>ref|XM_476301.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1348

 Score =  170 bits (86), Expect = 1e-39
 Identities = 129/142 (90%), Gaps = 1/142 (0%)
 Strand = Plus / Plus

                                                                       
Query: 60  tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 119
           |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 217 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 276

                                                                       
Query: 120 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 179
           ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 277 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 336

                                 
Query: 180 accagaagctgcaccatccgcg 201
           | ||||||| ||||||||||||
Sbjct: 337 agcagaagc-gcaccatccgcg 357
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>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence
          Length = 136866

 Score =  170 bits (86), Expect = 1e-39
 Identities = 129/142 (90%), Gaps = 1/142 (0%)
 Strand = Plus / Plus

                                                                          
Query: 60     tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 119
              |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 109368 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 109427

                                                                          
Query: 120    gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 179
              ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 109428 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 109487

                                    
Query: 180    accagaagctgcaccatccgcg 201
              | ||||||| ||||||||||||
Sbjct: 109488 agcagaagc-gcaccatccgcg 109508
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  170 bits (86), Expect = 1e-39
 Identities = 129/142 (90%), Gaps = 1/142 (0%)
 Strand = Plus / Plus

                                                                           
Query: 60      tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 119
               |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 1789152 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 1789211

                                                                           
Query: 120     gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 179
               ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 1789212 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 1789271

                                     
Query: 180     accagaagctgcaccatccgcg 201
               | ||||||| ||||||||||||
Sbjct: 1789272 agcagaagc-gcaccatccgcg 1789292
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>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0679C08
          Length = 156266

 Score =  170 bits (86), Expect = 1e-39
 Identities = 129/142 (90%), Gaps = 1/142 (0%)
 Strand = Plus / Plus

                                                                          
Query: 60     tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 119
              |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 114301 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 114360

                                                                          
Query: 120    gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 179
              ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 114361 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 114420

                                    
Query: 180    accagaagctgcaccatccgcg 201
              | ||||||| ||||||||||||
Sbjct: 114421 agcagaagc-gcaccatccgcg 114441
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>dbj|AK105690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C03, full
           insert sequence
          Length = 1482

 Score =  170 bits (86), Expect = 1e-39
 Identities = 129/142 (90%), Gaps = 1/142 (0%)
 Strand = Plus / Plus

                                                                       
Query: 60  tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 119
           |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 245 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 304

                                                                       
Query: 120 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 179
           ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 305 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 364

                                 
Query: 180 accagaagctgcaccatccgcg 201
           | ||||||| ||||||||||||
Sbjct: 365 agcagaagc-gcaccatccgcg 385
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>dbj|AK068474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155H19, full
           insert sequence
          Length = 1351

 Score =  170 bits (86), Expect = 1e-39
 Identities = 129/142 (90%), Gaps = 1/142 (0%)
 Strand = Plus / Plus

                                                                       
Query: 60  tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 119
           |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 219 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 278

                                                                       
Query: 120 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 179
           ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 279 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggccagccg 338

                                 
Query: 180 accagaagctgcaccatccgcg 201
           | ||||||| ||||||||||||
Sbjct: 339 agcagaagc-gcaccatccgcg 359
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>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence
          Length = 130987

 Score =  103 bits (52), Expect = 2e-19
 Identities = 119/140 (85%), Gaps = 1/140 (0%)
 Strand = Plus / Plus

                                                                          
Query: 62     ggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgggc 121
              ||||| || |||||||||||||| ||||| ||  |||| ||||| |||||||||||||| 
Sbjct: 101784 ggcgcttcaaagaagttcgagggctcgtcggagttcgtgaagctagagtaccacatgggt 101843

                                                                          
Query: 122    cccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccgac 181
              |||||||| ||  ||| |||||| || |||||||||||||| ||||||||||| ||||  
Sbjct: 101844 cccgtcctggcgtccgccatcacggtgcacccgatctggtatggcgcctggcccgccgcg 101903

                                  
Query: 182    cagaagctgcaccatccgcg 201
              ||||||| |||| |||||||
Sbjct: 101904 cagaagc-gcacgatccgcg 101922
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>ref|NM_124534.2| Arabidopsis thaliana unknown protein AT5G51550 mRNA, complete cds
          Length = 1402

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 138 acatcaccgtccacccgatctggtacggc 166
           |||||||||| ||||| ||||||||||||
Sbjct: 286 acatcaccgttcacccaatctggtacggc 314
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 151     cccgatctggtacggcgcctggccg 175
               |||||||||| ||||||||||||||
Sbjct: 2892204 cccgatctgggacggcgcctggccg 2892228
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>gb|AY103306.1| Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, complete cds
          Length = 1014

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 138 acatcaccgtccacccgatctggtacggc 166
           |||||||||| ||||| ||||||||||||
Sbjct: 197 acatcaccgttcacccaatctggtacggc 225
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>gb|AE011873.1| Xanthomonas axonopodis pv. citri str. 306,  section 251 of 469 of the
            complete genome
          Length = 10565

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 151  cccgatctggtacggcgcctggccg 175
            |||||||||| ||||||||||||||
Sbjct: 7807 cccgatctgggacggcgcctggccg 7831
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>gb|AY058883.1| Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, complete cds
          Length = 1221

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 138 acatcaccgtccacccgatctggtacggc 166
           |||||||||| ||||| ||||||||||||
Sbjct: 285 acatcaccgttcacccaatctggtacggc 313
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>gb|AF428325.1|AF428325 Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, complete cds
          Length = 1211

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 138 acatcaccgtccacccgatctggtacggc 166
           |||||||||| ||||| ||||||||||||
Sbjct: 282 acatcaccgttcacccaatctggtacggc 310
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>emb|BX821853.1|CNS0A8AB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL7ZB01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 978

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 138 acatcaccgtccacccgatctggtacggc 166
           |||||||||| ||||| ||||||||||||
Sbjct: 554 acatcaccgttcacccaatctggtacggc 526
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>emb|BX832775.1|CNS0A0KF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL10ZD05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1193

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 138 acatcaccgtccacccgatctggtacggc 166
           |||||||||| ||||| ||||||||||||
Sbjct: 264 acatcaccgttcacccaatctggtacggc 292
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>emb|BX831378.1|CNS0A0O9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS84ZD11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1234

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 138 acatcaccgtccacccgatctggtacggc 166
           |||||||||| ||||| ||||||||||||
Sbjct: 268 acatcaccgttcacccaatctggtacggc 296
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>gb|AY087269.1| Arabidopsis thaliana clone 33455 mRNA, complete sequence
          Length = 1272

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 138 acatcaccgtccacccgatctggtacggc 166
           |||||||||| ||||| ||||||||||||
Sbjct: 286 acatcaccgttcacccaatctggtacggc 314
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>dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17N15
          Length = 81293

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 138   acatcaccgtccacccgatctggtacggc 166
             |||||||||| ||||| ||||||||||||
Sbjct: 39185 acatcaccgttcacccaatctggtacggc 39157
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>gb|AY666490.1| Anas platyrhynchos voucher 1B-3367 cytochrome oxidase subunit 1
           (COI) gene, partial cds; mitochondrial
          Length = 694

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 121 ccccgtcctcgccgccgacatcac 144
           ||||||||||||||||| ||||||
Sbjct: 547 ccccgtcctcgccgccggcatcac 570
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>gb|AY666496.1| Anas platyrhynchos voucher 1B-3638 cytochrome oxidase subunit 1
           (COI) gene, partial cds; mitochondrial
          Length = 694

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 121 ccccgtcctcgccgccgacatcac 144
           ||||||||||||||||| ||||||
Sbjct: 547 ccccgtcctcgccgccggcatcac 570
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>gb|AY666221.1| Anas rubripes voucher 1B-726 cytochrome oxidase subunit 1 (COI)
           gene, partial cds; mitochondrial
          Length = 692

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 121 ccccgtcctcgccgccgacatcac 144
           ||||||||||||||||| ||||||
Sbjct: 545 ccccgtcctcgccgccggcatcac 568
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>gb|AY666211.1| Anas rubripes voucher 1B-711 cytochrome oxidase subunit 1 (COI)
           gene, partial cds; mitochondrial
          Length = 694

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 121 ccccgtcctcgccgccgacatcac 144
           ||||||||||||||||| ||||||
Sbjct: 547 ccccgtcctcgccgccggcatcac 570
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>gb|AY666405.1| Anas crecca voucher 1B-2590 cytochrome oxidase subunit 1 (COI)
           gene, partial cds; mitochondrial
          Length = 649

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 121 ccccgtcctcgccgccgacatcac 144
           ||||||||||||||||| ||||||
Sbjct: 502 ccccgtcctcgccgccggcatcac 525
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>ref|XM_478424.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2115

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 atgggccccgtcctcgccgc 135
           ||||||||||||||||||||
Sbjct: 186 atgggccccgtcctcgccgc 167
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>ref|XM_478215.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1361

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 108 agtaccacatgggccccgtc 127
           ||||||||||||||||||||
Sbjct: 137 agtaccacatgggccccgtc 156
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>ref|XM_883530.1| Leishmania major strain Friedlin hypothetical protein (L2385.05)
            partial mRNA
          Length = 2631

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  ctcgccgccgacatcaccgt 147
            ||||||||||||||||||||
Sbjct: 1776 ctcgccgccgacatcaccgt 1795
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    ctcgccgccgacatcaccgt 147
              ||||||||||||||||||||
Sbjct: 194124 ctcgccgccgacatcaccgt 194105
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    cctcgccgccgacatcaccg 146
              ||||||||||||||||||||
Sbjct: 118192 cctcgccgccgacatcaccg 118211
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>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    ccgaccagaagctgcaccatccgc 200
              ||||||||||||||||||| ||||
Sbjct: 208867 ccgaccagaagctgcaccacccgc 208844
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>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    ccgaccagaagctgcaccatccgc 200
              ||||||||||||||||||| ||||
Sbjct: 212309 ccgaccagaagctgcaccacccgc 212286
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>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12
          Length = 348134

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 177    ccgaccagaagctgcaccatccgc 200
              ||||||||||||||||||| ||||
Sbjct: 134482 ccgaccagaagctgcaccacccgc 134505
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>gb|AE005777.1| Caulobacter crescentus CB15 section 103 of 359 of the complete genome
          Length = 11208

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  gccgaccagaagctgcacca 195
            ||||||||||||||||||||
Sbjct: 3690 gccgaccagaagctgcacca 3671
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    cctcgccgccgacatcaccg 146
              ||||||||||||||||||||
Sbjct: 771925 cctcgccgccgacatcaccg 771906
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 116      atgggccccgtcctcgccgc 135
                ||||||||||||||||||||
Sbjct: 19885225 atgggccccgtcctcgccgc 19885206



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 108      agtaccacatgggccccgtc 127
                ||||||||||||||||||||
Sbjct: 18564848 agtaccacatgggccccgtc 18564867
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 123      ccgtcctcgccgccgacatc 142
                ||||||||||||||||||||
Sbjct: 25998071 ccgtcctcgccgccgacatc 25998052
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>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0707D10
          Length = 172003

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   ccgtcctcgccgccgacatc 142
             ||||||||||||||||||||
Sbjct: 94138 ccgtcctcgccgccgacatc 94119
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>dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0038D11
          Length = 156465

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  ccgtcctcgccgccgacatc 142
            ||||||||||||||||||||
Sbjct: 1646 ccgtcctcgccgccgacatc 1627
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>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0005E02
          Length = 89380

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   agtaccacatgggccccgtc 127
             ||||||||||||||||||||
Sbjct: 17390 agtaccacatgggccccgtc 17409
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>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   atgggccccgtcctcgccgc 135
             ||||||||||||||||||||
Sbjct: 49875 atgggccccgtcctcgccgc 49856
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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   agtaccacatgggccccgtc 127
             ||||||||||||||||||||
Sbjct: 93604 agtaccacatgggccccgtc 93623
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>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0650C03
          Length = 144337

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    atgggccccgtcctcgccgc 135
              ||||||||||||||||||||
Sbjct: 125384 atgggccccgtcctcgccgc 125365
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>dbj|AK121812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098C24, full
           insert sequence
          Length = 2185

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 atgggccccgtcctcgccgc 135
           ||||||||||||||||||||
Sbjct: 54  atgggccccgtcctcgccgc 35
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>dbj|AK064235.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H11, full
           insert sequence
          Length = 1361

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 108 agtaccacatgggccccgtc 127
           ||||||||||||||||||||
Sbjct: 137 agtaccacatgggccccgtc 156
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 163     cggcgcctggccggccgacc 182
               ||||||||||||||||||||
Sbjct: 3408867 cggcgcctggccggccgacc 3408848
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>gb|AY662783.1| Pterophyllum scalare cytochrome oxidase subunit I gene, partial
           cds; mitochondrial
          Length = 649

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 121 ccccgtcctcgccgccgacatcac 144
           ||||||||||||||||| ||||||
Sbjct: 547 ccccgtcctcgccgccggcatcac 570


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 707,231
Number of Sequences: 3902068
Number of extensions: 707231
Number of successful extensions: 54954
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54070
Number of HSP's gapped (non-prelim): 884
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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