>gb|AC156036.4| Mus musculus BAC clone RP23-341B16 from chromosome 12, complete sequence
          Length = 211424

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 185    ccaacaccaacaccagccacagctgca 211
              ||||||||||||||| |||||||||||
Sbjct: 177949 ccaacaccaacaccacccacagctgca 177923

>gb|AC165350.3| Mus musculus BAC clone RP23-249A17 from chromosome 12, complete sequence
          Length = 227048

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 185    ccaacaccaacaccagccacagctgca 211
              ||||||||||||||| |||||||||||
Sbjct: 115800 ccaacaccaacaccacccacagctgca 115774

>gb|AC154636.2| Mus musculus BAC clone RP23-302E1 from chromosome 12, complete sequence
          Length = 179631

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 185   ccaacaccaacaccagccacagctgca 211
             ||||||||||||||| |||||||||||
Sbjct: 11095 ccaacaccaacaccacccacagctgca 11121

>gb|AC122327.5| Mus musculus BAC clone RP23-339D20 from chromosome 12, complete sequence
          Length = 217167

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 185    ccaacaccaacaccagccacagctgca 211
              ||||||||||||||| |||||||||||
Sbjct: 196861 ccaacaccaacaccacccacagctgca 196835

>emb|CT572990.6| Mouse DNA sequence from clone RP24-393N9 on chromosome 12, complete
             sequence
          Length = 90243

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 185   ccaacaccaacaccagccacagctgca 211
             ||||||||||||||| |||||||||||
Sbjct: 77155 ccaacaccaacaccacccacagctgca 77129

>gb|AC163633.4| Mus musculus BAC clone RP24-177N8 from chromosome 12, complete sequence
          Length = 178326

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 185    ccaacaccaacaccagccacagctgca 211
              ||||||||||||||| |||||||||||
Sbjct: 116391 ccaacaccaacaccacccacagctgca 116365

>ref|XM_467393.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 905

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 183 caccaacaccaacaccagccacagctgcat 212
           ||||||||||||||||| ||||||| ||||
Sbjct: 541 caccaacaccaacaccatccacagcagcat 570

>ref|XM_467392.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 898

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 183 caccaacaccaacaccagccacagctgcat 212
           ||||||||||||||||| ||||||| ||||
Sbjct: 354 caccaacaccaacaccatccacagcagcat 325

>gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, complete sequence
          Length = 236143

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 149    ctatatacctctccttgccctc 170
              ||||||||||||||||||||||
Sbjct: 183972 ctatatacctctccttgccctc 183951

>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 183   caccaacaccaacaccagccacagctgcat 212
             ||||||||||||||||| ||||||| ||||
Sbjct: 84210 caccaacaccaacaccatccacagcagcat 84181

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 183      caccaacaccaacaccagccacagctgcat 212
                ||||||||||||||||| ||||||| ||||
Sbjct: 29278420 caccaacaccaacaccatccacagcagcat 29278449

>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0060O16
          Length = 164373

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 183   caccaacaccaacaccagccacagctgcat 212
             ||||||||||||||||| ||||||| ||||
Sbjct: 75765 caccaacaccaacaccatccacagcagcat 75794

>dbj|AK109110.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-B12, full
           insert sequence
          Length = 905

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 183 caccaacaccaacaccagccacagctgcat 212
           ||||||||||||||||| ||||||| ||||
Sbjct: 541 caccaacaccaacaccatccacagcagcat 570

>dbj|AK064638.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A10, full
           insert sequence
          Length = 1495

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 183 caccaacaccaacaccagccacagctgcat 212
           ||||||||||||||||| ||||||| ||||
Sbjct: 354 caccaacaccaacaccatccacagcagcat 325

>gb|AC126045.3| Mus musculus BAC clone RP23-71I22 from 12, complete sequence
          Length = 224725

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 186    caacaccaacaccagccacagctgca 211
              |||||||||||||| |||||||||||
Sbjct: 159984 caacaccaacaccacccacagctgca 159959

>emb|AL672200.10| Mouse DNA sequence from clone RP23-37G19 on chromosome 3, complete
             sequence
          Length = 89129

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 149   ctatatacctctccttgccctc 170
             ||||||||||||||||||||||
Sbjct: 24830 ctatatacctctccttgccctc 24809

>ref|XM_756804.1| Ustilago maydis 521 hypothetical protein (UM05750.1) partial mRNA
          Length = 1608

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  accaccaacaccaacaccagc 201
            |||||||||||||||||||||
Sbjct: 1173 accaccaacaccaacaccagc 1153

>emb|AL138702.8| Human DNA sequence from clone RP11-407E23 on chromosome 13, complete
              sequence
          Length = 191567

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 207    ctgcattgcttcaagaacaga 227
              |||||||||||||||||||||
Sbjct: 138770 ctgcattgcttcaagaacaga 138750

>gb|AC013714.8| Homo sapiens chromosome , clone RP11-22P4, complete sequence
          Length = 140009

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 205   agctgcattgcttcaagaaca 225
             |||||||||||||||||||||
Sbjct: 52426 agctgcattgcttcaagaaca 52446

>gb|AC102443.11| Mus musculus chromosome 3, clone RP24-191D1, complete sequence
          Length = 147088

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  actgccagtactgatactgac 121
            |||||||||||||||||||||
Sbjct: 5094 actgccagtactgatactgac 5074

>gb|AC142115.3| Mus musculus BAC clone RP23-327M1 from 3, complete sequence
          Length = 174667

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 101    actgccagtactgatactgac 121
              |||||||||||||||||||||
Sbjct: 164897 actgccagtactgatactgac 164877

>dbj|AP006863.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT08G16, TM0934,
             complete sequence
          Length = 104894

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   accaccaacaccaacaccagc 201
             |||||||||||||||||||||
Sbjct: 18614 accaccaacaccaacaccagc 18634

>ref|NM_001035676.1| Arabidopsis thaliana nucleic acid binding AT3G23900 transcript
           variant AT3G23900.2 mRNA, complete cds
          Length = 3024

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 181 accaccaacaccaacaccag 200
           ||||||||||||||||||||
Sbjct: 622 accaccaacaccaacaccag 603

>ref|NM_113295.2| Arabidopsis thaliana nucleic acid binding AT3G23900 transcript
           variant AT3G23900.1 mRNA, complete cds
          Length = 3417

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 181 accaccaacaccaacaccag 200
           ||||||||||||||||||||
Sbjct: 622 accaccaacaccaacaccag 603

>ref|XM_642150.1| Dictyostelium discoideum hypothetical protein (DDB0189480), partial
           mRNA
          Length = 903

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 ccaccaacaccaacaccagc 201
           ||||||||||||||||||||
Sbjct: 28  ccaccaacaccaacaccagc 47

>ref|XM_798004.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
           (MASP) (Tc00.1047053510915.10) partial mRNA
          Length = 993

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 183 caccaacaccaacaccagccacag 206
           ||||||||||||||||||| ||||
Sbjct: 836 caccaacaccaacaccagcaacag 859

>emb|CR361559.12| Zebrafish DNA sequence from clone DKEY-3P10 in linkage group 23,
             complete sequence
          Length = 246041

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   gctgtaatgtgacactatat 154
             ||||||||||||||||||||
Sbjct: 88754 gctgtaatgtgacactatat 88773

>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 179     tgaccaccaacaccaacacc 198
               ||||||||||||||||||||
Sbjct: 1469915 tgaccaccaacaccaacacc 1469896

>emb|AL157414.19| Human DNA sequence from clone RP11-560A15 on chromosome 20 Contains two
             novel genes, the 3' part of the BMP7 for bone
             morphogenetic protein 7 and a CpG island, complete
             sequence
          Length = 124849

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   accaccaacaccaacaccag 200
             ||||||||||||||||||||
Sbjct: 47093 accaccaacaccaacaccag 47074

>emb|CR388122.9| Zebrafish DNA sequence from clone CH211-261F7 in linkage group 20
             Contains the 5' end of the gene for a novel protein
             similar to vertebrate ectonucleotide
             pyrophosphatase/phosphodiesterase 5 (putative function)
             (ENPP5), a novel gene, the 3' end of the ccm2 gene for
             cerebral cavernous malformation 2 and a CpG island,
             complete sequence
          Length = 55981

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   caccaacaccaacaccagcc 202
             ||||||||||||||||||||
Sbjct: 31373 caccaacaccaacaccagcc 31354

>gb|AC011496.7| Homo sapiens chromosome 19 clone CTB-3M11, complete sequence
          Length = 98069

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ttgcttcaagaacagaacat 231
             ||||||||||||||||||||
Sbjct: 57853 ttgcttcaagaacagaacat 57834

>gb|DQ190053.1| Cystobacter fuscus MmxC (mmxC) and MmxB (mmxB) genes, partial cds
          Length = 12757

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    ctgcggccggagttgctgga 101
             ||||||||||||||||||||
Sbjct: 12103 ctgcggccggagttgctgga 12122

>gb|AC055732.16| Homo sapiens 3 BAC RP11-39E4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 176459

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   gactgccagtactgatactg 119
             ||||||||||||||||||||
Sbjct: 99877 gactgccagtactgatactg 99896

>gb|AC027277.5| Homo sapiens chromosome 16 clone RP11-27M24, complete sequence
          Length = 163735

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    cctccctgtactgtctccca 62
             ||||||||||||||||||||
Sbjct: 12180 cctccctgtactgtctccca 12161

>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 186     caacaccaacaccagccaca 205
               ||||||||||||||||||||
Sbjct: 6125072 caacaccaacaccagccaca 6125053

>dbj|AP001297.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13
          Length = 106203

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   accaccaacaccaacaccag 200
             ||||||||||||||||||||
Sbjct: 38268 accaccaacaccaacaccag 38287

>emb|BX957271.6| Zebrafish DNA sequence from clone CH211-130N22 in linkage group 10,
             complete sequence
          Length = 161165

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   caccaacaccaacaccagcc 202
             ||||||||||||||||||||
Sbjct: 97313 caccaacaccaacaccagcc 97332

>emb|AL845455.7| Mouse DNA sequence from clone RP23-325E4 on chromosome 2, complete
              sequence
          Length = 143689

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    ccaccaacaccaacaccagc 201
              ||||||||||||||||||||
Sbjct: 119402 ccaccaacaccaacaccagc 119421


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,025,639
Number of Sequences: 3902068
Number of extensions: 2025639
Number of successful extensions: 46156
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46056
Number of HSP's gapped (non-prelim): 100
length of query: 243
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 221
effective length of database: 17,147,199,772
effective search space: 3789531149612
effective search space used: 3789531149612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)