>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)|
           (Cucumisin-like serine protease)
          Length = 757

 Score =  164 bits (415), Expect = 5e-41
 Identities = 82/122 (67%), Positives = 93/122 (76%)
 Frame = +1

Query: 1   QKGQVVKEAGGIGMILANTAANGEELVADSHLLPXXXXXXXXXXXXKKYTRTAPKPTATL 180
           QKG VVK AGG+GMILANTAANGEELVAD+HLLP            + Y  T P PTA++
Sbjct: 412 QKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASI 471

Query: 181 SFAGTKLGIRPSPVVAAFSSRGPNYLTLEILKPDLIAPGVNILAAWSGDASPSSLASDRR 360
           S  GT +G++PSPVVAAFSSRGPN +T  ILKPDLIAPGVNILAAW+G A P+ LASD R
Sbjct: 472 SILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSR 531

Query: 361 RV 366
           RV
Sbjct: 532 RV 533

>CUCM1_CUCME (Q39547) Cucumisin precursor (EC 3.4.21.25) (Allergen Cuc m 1)|
          Length = 731

 Score = 61.6 bits (148), Expect = 4e-10
 Identities = 35/97 (36%), Positives = 51/97 (52%)
 Frame = +1

Query: 28  GGIGMILANTAANGEELVADSHLLPXXXXXXXXXXXXKKYTRTAPKPTATLSFAGTKLGI 207
           G  G+++ +   +     ADS+ LP             +Y  +   P AT+ F  T +  
Sbjct: 412 GAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATI-FKSTTILN 466

Query: 208 RPSPVVAAFSSRGPNYLTLEILKPDLIAPGVNILAAW 318
             +PVV +FSSRGPN  T +++KPD+  PGV ILAAW
Sbjct: 467 ASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW 503

>XSP1_ARATH (Q9LLL8) Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1)|
           (Cucumisin-like protein)
          Length = 749

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
 Frame = +1

Query: 28  GGIGMILANTAANGEELVADSHL-------LPXXXXXXXXXXXXKKYTRTAPKPTATLSF 186
           GG+   + +    G  +V+D +L        P             +Y  +    +A +  
Sbjct: 410 GGVESTIKSYGGAGAIIVSDQYLDNAQIFMAPATSVNSSVGDIIYRYINSTRSASAVIQ- 468

Query: 187 AGTKLGIRPSPVVAAFSSRGPNYLTLEILKPDLIAPGVNILAAWSGDASPSSLASD 354
             T+    P+P VA+FSSRGPN  ++ +LKPD+ APG++ILAA++   S + L  D
Sbjct: 469 -KTRQVTIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGD 523

>SUBV_BACSU (P29141) Minor extracellular protease vpr precursor (EC 3.4.21.-)|
          Length = 806

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 30/103 (29%), Positives = 43/103 (41%)
 Frame = +1

Query: 4   KGQVVKEAGGIGMILANTAANGEELVADSHLLPXXXXXXXXXXXXKKYTRTAPKPTATLS 183
           K    K+AG IGM++ N  +   E       +P                +     T    
Sbjct: 417 KADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVSALKAGETKTTFKL 476

Query: 184 FAGTKLGIRPSPVVAAFSSRGPNYLTLEILKPDLIAPGVNILA 312
                LG +    VA FSSRGP  +   ++KPD+ APGVNI++
Sbjct: 477 TVSKALGEQ----VADFSSRGP-VMDTWMIKPDISAPGVNIVS 514

>ALP_TRIHA (Q03420) Alkaline proteinase precursor (EC 3.4.21.-) (ALP)|
          Length = 409

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
 Frame = +1

Query: 190 GTKLGIRPSPVVAAFSSRGPNYLTLEILK--------------PDLIAPGVNILAAWSGD 327
           G  LG  P PV     +  PN +T+  L                D+ APGVNIL++W G 
Sbjct: 284 GDSLG-NPQPVSGTSPANVPNAITVAALDINWRTASFTNYGAGVDVFAPGVNILSSWIGS 342

Query: 328 ASPSSLAS 351
            + ++  S
Sbjct: 343 NTATNTIS 350

>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 150 QDGPKADGDTQLRRNQARDPAVAGGRRVLLPGPKLPDSGDPQAG 281
           +  P A G   L+     +PAV G     LPG  LP +G P AG
Sbjct: 628 EKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGAG 671

>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 150 QDGPKADGDTQLRRNQARDPAVAGGRRVLLPGPKLPDSGDPQAG 281
           +  P A G   L+     +PAV G     LPG  LP +G P AG
Sbjct: 628 EKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGAG 671

>UBQL3_MOUSE (Q8C5U9) Ubiquilin-3|
          Length = 658

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 151 RTAPKPTATLSFAGTKLGIRPSP---VVAAFSSRGPNYLTLE 267
           R  P P  +L+   T+LGI  SP   V+ A +S  P  L LE
Sbjct: 575 RPTPTPQISLAQGSTELGIHSSPFLQVLQALASTNPQQLQLE 616

>TAGB_DICDI (P54683) Prestalk-specific protein tagB precursor (EC 3.4.21.-)|
          Length = 1905

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 223 VAAFSSRGPNYLTLEILKPDLIAPGVNILAAWSGDASPSSLASD 354
           + +FSS+GP +     LKPD++APG  I +A S   + +    D
Sbjct: 638 MGSFSSKGPTHDGR--LKPDIVAPGEYITSARSNGENSTDQCGD 679

>LARP1_MOUSE (Q6ZQ58) La-related protein 1 (La ribonucleoprotein domain family|
           member 1) (Fragment)
          Length = 364

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -2

Query: 279 RLEDLQSQVVWAPGGERGDHRRRPDPELGSGEAECR 172
           RLED +   V  P GE G+H+R P    GSGE   R
Sbjct: 289 RLEDFR---VDPPMGEEGNHKRHPVVAGGSGEGRKR 321

>TAGC_DICDI (Q23868) Prestalk-specific protein tagC precursor (EC 3.4.21.-)|
          Length = 1743

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 223 VAAFSSRGPNYLTLEILKPDLIAPGVNILAAWSGDASPSSLASD 354
           + +FSS+GP +     +KP L+APG  I +A S  A+ +    D
Sbjct: 580 ICSFSSKGPTHDGR--MKPALVAPGEYITSARSNGANTTDQCGD 621

>CD2A2_RAT (Q8QZZ9) Cyclin-dependent kinase inhibitor 2A, isoform 2 (p19ARF)|
          Length = 160

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 219 RRRPDPELGSGEAECRRRLWGRPGVLLCRHAFRFPN 112
           RR P P  G G+ + +R+    P +L CR   R P+
Sbjct: 54  RRGPQPHPGPGDDDGQRQSGSSPALLWCRFELRGPH 89

>ITPL_SCHGR (Q26492) Ion transport peptide-like precursor|
          Length = 134

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 222 HRRRPDPELGSGEAECRRRLWGRPGVLLC 136
           H+++   +   GEA CR   W   GV+LC
Sbjct: 3   HQKQQQQQKQQGEAPCRHLQWRLSGVVLC 31

>ITP_SCHGR (Q26491) Ion transport peptide precursor (ITP)|
          Length = 130

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 222 HRRRPDPELGSGEAECRRRLWGRPGVLLC 136
           H+++   +   GEA CR   W   GV+LC
Sbjct: 3   HQKQQQQQKQQGEAPCRHLQWRLSGVVLC 31

>RNZ_METMA (Q8Q032) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 305

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +1

Query: 160 PKPTATLSFAGTKLGIRPSPVVAAFSSRGPNYLTLEILKPDLI--APGVNILAAWSGDAS 333
           P+P         +LG+ P P+ A      P  +  +++KP+ +  AP       +SGD  
Sbjct: 151 PRPGRFNREKAVELGVLPGPLFAKLQKGNPVEVNGKLVKPEEVVGAPRPGRTVVYSGDTR 210

Query: 334 PSSLASDRRR 363
           P     +  R
Sbjct: 211 PCEAVLEASR 220

>PDE3A_HUMAN (Q14432) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A)
           (CGI-PDE A)
          Length = 1141

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
 Frame = -2

Query: 246 APGGERGDHRRRPDPELGSGEAECRRRLWGRP--------------GVLLCRHAFRFPNG 109
           APG E G     P P  G+     R   W +P              G+ L R   R P  
Sbjct: 104 APGAEGGVF---PGPRGGAPGGGARLSPWLQPSALLFSLLCAFFWMGLYLLRAGVRLPLA 160

Query: 108 HGWQEVAVGDE-LLAVGRGVGEDH 40
                   G E L+ +G GVGEDH
Sbjct: 161 VALLAACCGGEALVQIGLGVGEDH 184

>NIFD_FRAAL (Q02452) Nitrogenase molybdenum-iron protein alpha chain (EC|
           1.18.6.1) (Nitrogenase component I) (Dinitrogenase)
          Length = 473

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 285 EVRLEDLQSQVVWAPGGERGDHRRRPDPELGSGEAECRRRLWGRPGVLLCR 133
           E  + ++ SQ        R  H +  DPE GS E E +  +  RPGV+  R
Sbjct: 13  EAMIAEVLSQYPKKAAKFRAKHLKANDPE-GSKECEVKSNIKSRPGVMTIR 62

>WDR74_BOVIN (Q58D06) WD-repeat protein 74|
          Length = 385

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 288 DEVRLEDLQSQVVWAPGGERGDHRRRPDPELGSGEAECRRRLWGRPG 148
           ++V  ED ++  +WA   E    R+ PD E   G  + RRR   RPG
Sbjct: 336 NKVPSEDTETDELWA-SLEAAAKRKLPDWEQTQGALQARRRKKKRPG 381

>PRP2_RAT (P10164) Acidic proline-rich protein PRP25 precursor (Fragment)|
          Length = 172

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
 Frame = +3

Query: 150 QDGPKADGDTQ---LRRNQARDPAVAGGRRVLLPGPKLPDSGDPQAGPHXXXXXXXXXXX 320
           Q GP   G  Q   L+  + +DP   G  +   P P  P    P  GP            
Sbjct: 49  QQGPPPQGGPQQSPLQPGKPQDPPPQGSPQQKPPQPGKPQGPPPPGGPQ----------- 97

Query: 321 XXXQPVEPG--QRPPP 362
              +P +PG  Q PPP
Sbjct: 98  --KKPPQPGKPQGPPP 111

>UPPP2_STRCO (Q9K407) Undecaprenyl-diphosphatase 2 (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase 2) (Bacitracin resistance
           protein 2)
          Length = 291

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -3

Query: 368 PTRRRSLARL---DGLASPLHAARMFTPGAMRSGLRISRVR*FGPREENAA 225
           P +R+ L  L   DGL   L  A    PG  RSG  IS     G R E AA
Sbjct: 149 PQQRKELENLGVRDGLIYGLCQAAALIPGVSRSGATISGGLFMGYRREAAA 199

>VASP_CANFA (P50551) Vasodilator-stimulated phosphoprotein (VASP)|
          Length = 383

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/71 (28%), Positives = 25/71 (35%)
 Frame = +3

Query: 150 QDGPKADGDTQLRRNQARDPAVAGGRRVLLPGPKLPDSGDPQAGPHXXXXXXXXXXXXXX 329
           Q+GP ++   Q +R Q   P     R     GP  P +G P   P               
Sbjct: 132 QNGPASEEVEQQKRQQPGPPEHLERRVSNAGGPPAPPAGGPPPPP--------------G 177

Query: 330 QPVEPGQRPPP 362
            P  PG  PPP
Sbjct: 178 PPPPPGPPPPP 188

>SUBF_BACSU (P16397) Bacillopeptidase F precursor (EC 3.4.21.-) (Esterase)|
           (RP-I protease) (90 kDa serine proteinase)
          Length = 1433

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 223 VAAFSSRGPNYLTLEILKPDLIAPGVNILAAWSG 324
           +A FS +GP+    + +KP++ APGVNI ++  G
Sbjct: 410 LADFSLQGPS--PYDEIKPEISAPGVNIRSSVPG 441

>ORYZ_ASPOR (P12547) Oryzin precursor (EC 3.4.21.63) (Alkaline proteinase)|
           (ALP) (Aspergillus proteinase B) (Aspergillopeptidase B)
          Length = 403

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 280 DLIAPGVNILAAWSGDASPSSLAS 351
           D+ APG +IL+AW G +S ++  S
Sbjct: 323 DVFAPGQDILSAWIGSSSATNTIS 346

>ORYZ_ASPFL (P35211) Oryzin precursor (EC 3.4.21.63) (Alkaline proteinase)|
           (ALP) (Elastase) (Elastinolytic serine proteinase)
          Length = 403

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 280 DLIAPGVNILAAWSGDASPSSLAS 351
           D+ APG NIL+AW G  + ++  S
Sbjct: 323 DIFAPGQNILSAWIGSNTATNTIS 346

>ATU_DROME (Q94546) Another transcription unit protein|
          Length = 725

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 159 PKADGDTQLRRNQARDPAVAGGRRVLLPGPKLPDSGDPQAG 281
           P  D  TQLR  +A+       +   LP  K P +G+P  G
Sbjct: 550 PTTDRPTQLREEEAKLRQAMRNQHKSLPKKKKPGAGEPLIG 590


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,035,979
Number of Sequences: 219361
Number of extensions: 977379
Number of successful extensions: 2265
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2251
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)