ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast43h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 55 4e-08
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 50 1e-06
3FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 39 0.004
4EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 33 0.17
5STK36_MOUSE (Q69ZM6) Serine/threonine-protein kinase 36 (EC 2.7.... 33 0.22
6IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2 29 3.2
7PIAS4_HUMAN (Q8N2W9) Protein inhibitor of activated STAT protein... 28 5.5
8SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB s... 28 7.1
9AROE_NEIMU (P95389) Shikimate dehydrogenase (EC 1.1.1.25) 28 7.1
10LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 27 9.3

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +1

Query: 166 RLVNAVYVFGDSQVDVGNNDYLPAPAPRANRPYGMDLP-GRPTGRFTNGYNLADVISQRL 342
           + + AV+ FGDS  D GNN+ L        RPYGMD P G  TGRF+NG   +D IS+ L
Sbjct: 121 KTIPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYL 180

Query: 343 G 345
           G
Sbjct: 181 G 181



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 166 RLVNAVYVFGDSQVDVGNNDYLPAPAPRANRPYGMDLPGR-PTGRFTNGYNLADVISQRL 342
           + + AV+ FGDS  D GNN+ L        RPYGMD   R  TGRF+NG   +D +++ +
Sbjct: 200 KTIPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYM 259

Query: 343 G 345
           G
Sbjct: 260 G 260



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +1

Query: 178 AVYVFGDSQVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRLG 345
           A++ FGDS  D G    L A   +A  P+G    G P GR+ +G  + D I++ LG
Sbjct: 30  AIFNFGDSNSDTGG---LSAAFGQAGPPHGSSFFGSPAGRYCDGRLVIDFIAESLG 82



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +1

Query: 178 AVYVFGDSQVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQ 336
           A++ FGDS  D G       P    N PYG     R TGR+++G  + D I++
Sbjct: 34  AIFNFGDSNSDTGGKAAAFYPL---NPPYGETFFHRSTGRYSDGRLIIDFIAE 83



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>STK36_MOUSE (Q69ZM6) Serine/threonine-protein kinase 36 (EC 2.7.11.1) (Fused|
           homolog)
          Length = 1268

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 23  PLPLASYHSHSESLQQRPWRGALL 94
           PL L  Y   S S+QQ+PW GALL
Sbjct: 470 PLSLLRYSQESSSIQQQPWYGALL 493



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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 211 VGNNDYLPAPAPRANRPYGMDLPGRP 288
           VGNN Y   PAP   RP     PG P
Sbjct: 178 VGNNPYSSQPAPERERPAARPGPGGP 203



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>PIAS4_HUMAN (Q8N2W9) Protein inhibitor of activated STAT protein 4 (Protein|
           inhibitor of activated STAT protein gamma) (PIAS-gamma)
           (PIASy)
          Length = 510

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +1

Query: 178 AVYVFGDSQVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRL 342
           A+ V G S      N  LPAP+   +   G    G P G   NG   ADV+   L
Sbjct: 420 AILVLGPSDA----NGLLPAPSVNGSGALGSTGGGGPVGSMENGKPGADVVDLTL 470



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>SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit) (Protein foggy)
          Length = 1084

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 226  YLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRLGFEMSPKP 366
            Y   P+P+ N  Y    PG P    T+ Y+     S +  ++ SP P
Sbjct: 860  YPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQPSPSP 906



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>AROE_NEIMU (P95389) Shikimate dehydrogenase (EC 1.1.1.25)|
          Length = 269

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 280 GRPTGRFTNGYNLADVISQRLGFEMSPK 363
           G+  G  T+G  L D IS+RLG E+S K
Sbjct: 97  GKIRGDNTDGIGLTDDISKRLGVELSGK 124



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 199 SQVDVGNNDYLPAPAPRANRPYGMD 273
           +++   NN YLP+  P A RPY  D
Sbjct: 153 NRIFFANNSYLPSQMPEALRPYRED 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,850,529
Number of Sequences: 219361
Number of extensions: 492248
Number of successful extensions: 1417
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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