ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast43h08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 103 bits (52), Expect = 4e-19 Identities = 61/64 (95%) Strand = Plus / Minus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccggcgccgg 241 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct: 23332587 tgtacgtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgccgg 23332528 Query: 242 cgcc 245 |||| Sbjct: 23332527 cgcc 23332524 Score = 69.9 bits (35), Expect = 5e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 292 ggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||||||||||| ||||||||||||||||||| Sbjct: 23332453 ggccgcttcaccaacggcttcaacctcgccgacgtcatc 23332415 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 190 ttcggcgactcgcaggtggacgtcggcaacaac 222 ||||||||||||| ||||||| |||||||||| Sbjct: 10070980 ttcggcgactcgctggtggacagcggcaacaac 10070948
>dbj|AK071697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108M03, full insert sequence Length = 1582 Score = 103 bits (52), Expect = 4e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccggcgccgg 241 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct: 167 tgtacgtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgccgg 226 Query: 242 cgcc 245 |||| Sbjct: 227 cgcc 230 Score = 69.9 bits (35), Expect = 5e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 292 ggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||||||||||| ||||||||||||||||||| Sbjct: 301 ggccgcttcaccaacggcttcaacctcgccgacgtcatc 339
>dbj|AK070277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050D08, full insert sequence Length = 1741 Score = 103 bits (52), Expect = 4e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccggcgccgg 241 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct: 167 tgtacgtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgccgg 226 Query: 242 cgcc 245 |||| Sbjct: 227 cgcc 230 Score = 69.9 bits (35), Expect = 5e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 292 ggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||||||||||| ||||||||||||||||||| Sbjct: 301 ggccgcttcaccaacggcttcaacctcgccgacgtcatc 339
>dbj|AK060201.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-G04, full insert sequence Length = 1637 Score = 103 bits (52), Expect = 4e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccggcgccgg 241 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct: 241 tgtacgtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgccgg 300 Query: 242 cgcc 245 |||| Sbjct: 301 cgcc 304 Score = 69.9 bits (35), Expect = 5e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 292 ggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||||||||||| ||||||||||||||||||| Sbjct: 375 ggccgcttcaccaacggcttcaacctcgccgacgtcatc 413
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 103 bits (52), Expect = 4e-19 Identities = 61/64 (95%) Strand = Plus / Minus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccggcgccgg 241 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct: 23260778 tgtacgtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgccgg 23260719 Query: 242 cgcc 245 |||| Sbjct: 23260718 cgcc 23260715 Score = 69.9 bits (35), Expect = 5e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 292 ggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||||||||||| ||||||||||||||||||| Sbjct: 23260644 ggccgcttcaccaacggcttcaacctcgccgacgtcatc 23260606 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 190 ttcggcgactcgcaggtggacgtcggcaacaac 222 ||||||||||||| ||||||| |||||||||| Sbjct: 10070865 ttcggcgactcgctggtggacagcggcaacaac 10070833
>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 168063 Score = 103 bits (52), Expect = 4e-19 Identities = 61/64 (95%) Strand = Plus / Minus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccggcgccgg 241 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct: 145705 tgtacgtgttcggcgactcgctggtggacgtcggcaacaacgacttcctgccgccgccgg 145646 Query: 242 cgcc 245 |||| Sbjct: 145645 cgcc 145642 Score = 69.9 bits (35), Expect = 5e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 292 ggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||||||||||| ||||||||||||||||||| Sbjct: 145571 ggccgcttcaccaacggcttcaacctcgccgacgtcatc 145533
>ref|XM_467708.1| Oryza sativa (japonica cultivar-group), mRNA Length = 872 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||||||||||||| |||||||||||| |||||| | |||||||||| Sbjct: 357 gtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacctgccgg 411 Score = 40.1 bits (20), Expect = 4.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 283 aggcccaccggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||| | |||| ||| ||||||||| |||||||| ||||| Sbjct: 459 aggcccaccggaaggttcagcaatggctacaacgtcgccgacttcatc 506
>ref|XM_506961.1| PREDICTED Oryza sativa (japonica cultivar-group), P0516G10.12-1 mRNA Length = 1637 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||||||||||||| |||||||||||| |||||| | |||||||||| Sbjct: 354 gtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacctgccgg 408 Score = 40.1 bits (20), Expect = 4.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 283 aggcccaccggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||| | |||| ||| ||||||||| |||||||| ||||| Sbjct: 456 aggcccaccggaaggttcagcaatggctacaacgtcgccgacttcatc 503
>ref|XM_467707.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1637 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||||||||||||| |||||||||||| |||||| | |||||||||| Sbjct: 353 gtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacctgccgg 407 Score = 40.1 bits (20), Expect = 4.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 283 aggcccaccggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||| | |||| ||| ||||||||| |||||||| ||||| Sbjct: 455 aggcccaccggaaggttcagcaatggctacaacgtcgccgacttcatc 502
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||||||||||||| |||||||||||| |||||| | |||||||||| Sbjct: 30985736 gtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacctgccgg 30985682 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg 231 |||||||||||||||| ||| ||||| ||||||||| |||||||| Sbjct: 27176385 cgtgttcggcgactcgacggttgacgtgggcaacaacaactacctg 27176340 Score = 46.1 bits (23), Expect = 0.080 Identities = 29/31 (93%) Strand = Plus / Minus Query: 279 cggcaggcccaccggccgcttcaccaacggc 309 |||||||||||||||||| |||| ||||||| Sbjct: 547505 cggcaggcccaccggccggttcagcaacggc 547475 Score = 44.1 bits (22), Expect = 0.31 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Minus Query: 184 tacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg-ccggcgccg 240 ||||||||||||||||| || || |||||||||||| |||||||| ||||||||| Sbjct: 27181085 tacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccg 27181028 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaac 222 |||||||||||||||| |||||||| ||| |||||| Sbjct: 15410481 cgtgttcggcgactcgacggtggacgccgggaacaac 15410517 Score = 40.1 bits (20), Expect = 4.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 283 aggcccaccggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||| | |||| ||| ||||||||| |||||||| ||||| Sbjct: 30985634 aggcccaccggaaggttcagcaatggctacaacgtcgccgacttcatc 30985587 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 284 ggcccaccggccgcttcaccaacggctacaac 315 ||||||||||||| |||| |||||| |||||| Sbjct: 27180976 ggcccaccggccggttcagcaacgggtacaac 27180945
>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516G10 Length = 148937 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||||||||||||| |||||||||||| |||||| | |||||||||| Sbjct: 40692 gtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacctgccgg 40638 Score = 40.1 bits (20), Expect = 4.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 283 aggcccaccggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||| | |||| ||| ||||||||| |||||||| ||||| Sbjct: 40590 aggcccaccggaaggttcagcaatggctacaacgtcgccgacttcatc 40543
>dbj|AK111360.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H05, full insert sequence Length = 888 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||||||||||||| |||||||||||| |||||| | |||||||||| Sbjct: 357 gtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacctgccgg 411 Score = 40.1 bits (20), Expect = 4.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 283 aggcccaccggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||| | |||| ||| ||||||||| |||||||| ||||| Sbjct: 459 aggcccaccggaaggttcagcaatggctacaacgtcgccgacttcatc 506
>dbj|AK099325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033016K19, full insert sequence Length = 1637 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||||||||||||| |||||||||||| |||||| | |||||||||| Sbjct: 353 gtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacctgccgg 407 Score = 40.1 bits (20), Expect = 4.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 283 aggcccaccggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||| | |||| ||| ||||||||| |||||||| ||||| Sbjct: 455 aggcccaccggaaggttcagcaatggctacaacgtcgccgacttcatc 502
>ref|XM_463033.1| Oryza sativa (japonica cultivar-group), mRNA Length = 342 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccggcg 237 |||||||| | ||||||||||||| |||||| || |||||| |||||||||||||| Sbjct: 119 tgtacgtgctgggcgactcgcaggcggacgtagggaacaacaactacctgccggcg 174
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccggcg 237 |||||||| | ||||||||||||| |||||| || |||||| |||||||||||||| Sbjct: 21123519 tgtacgtgctgggcgactcgcaggcggacgtagggaacaacaactacctgccggcg 21123464 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 193 ggcgactcgcaggtggacgtcggcaacaacgactacctgcc 233 ||||||||||||| ||||||||| |||||| |||||||||| Sbjct: 21161524 ggcgactcgcaggcggacgtcgggaacaacaactacctgcc 21161564 Score = 48.1 bits (24), Expect = 0.020 Identities = 45/52 (86%) Strand = Plus / Minus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgc 232 ||||||||| |||||||||||| || |||||| || |||||| || |||||| Sbjct: 21089760 gtgtacgtgctcggcgactcgctggcggacgtggggaacaacaaccacctgc 21089709 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 280 ggcaggcccaccggccgcttcaccaacggctacaacctcgccgac 324 |||| |||||||||| | |||| ||||||||||||| ||| |||| Sbjct: 21161623 ggcaagcccaccggcaggttcagcaacggctacaacttcgtcgac 21161667 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 gacgtcggcaacaacgactacctgc 232 ||||||||||||||| ||||||||| Sbjct: 15819033 gacgtcggcaacaacaactacctgc 15819057
>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete sequence Length = 131250 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccggcg 237 |||||||| | ||||||||||||| |||||| || |||||| |||||||||||||| Sbjct: 101275 tgtacgtgctgggcgactcgcaggcggacgtagggaacaacaactacctgccggcg 101220 Score = 48.1 bits (24), Expect = 0.020 Identities = 45/52 (86%) Strand = Plus / Minus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgc 232 ||||||||| |||||||||||| || |||||| || |||||| || |||||| Sbjct: 67516 gtgtacgtgctcggcgactcgctggcggacgtggggaacaacaaccacctgc 67465
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccggcg 237 |||||||| | ||||||||||||| |||||| || |||||| |||||||||||||| Sbjct: 21116548 tgtacgtgctgggcgactcgcaggcggacgtagggaacaacaactacctgccggcg 21116493 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 193 ggcgactcgcaggtggacgtcggcaacaacgactacctgcc 233 ||||||||||||| ||||||||| |||||| |||||||||| Sbjct: 21154553 ggcgactcgcaggcggacgtcgggaacaacaactacctgcc 21154593 Score = 48.1 bits (24), Expect = 0.020 Identities = 45/52 (86%) Strand = Plus / Minus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgc 232 ||||||||| |||||||||||| || |||||| || |||||| || |||||| Sbjct: 21082789 gtgtacgtgctcggcgactcgctggcggacgtggggaacaacaaccacctgc 21082738 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 280 ggcaggcccaccggccgcttcaccaacggctacaacctcgccgac 324 |||| |||||||||| | |||| ||||||||||||| ||| |||| Sbjct: 21154652 ggcaagcccaccggcaggttcagcaacggctacaacttcgtcgac 21154696 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 gacgtcggcaacaacgactacctgc 232 ||||||||||||||| ||||||||| Sbjct: 15813567 gacgtcggcaacaacaactacctgc 15813591
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||| ||||||||| | ||||||||||||||||| || ||||||||| Sbjct: 30314196 gtgtacgtgttgggcgactcgacgctggacgtcggcaacaacaaccacctgccgg 30314142 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 190 ttcggcgactcgcaggtggacgtcggcaacaacgactacctg 231 ||||||||||||| | |||||| |||||||||||||||||| Sbjct: 6747010 ttcggcgactcgctgtcggacgtgggcaacaacgactacctg 6747051 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 206 tggacgtcggcaacaacgactacct 230 ||||||||||||||||| ||||||| Sbjct: 30323847 tggacgtcggcaacaacaactacct 30323823
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548E04 Length = 138037 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||| ||||||||| | ||||||||||||||||| || ||||||||| Sbjct: 60791 gtgtacgtgttgggcgactcgacgctggacgtcggcaacaacaaccacctgccgg 60737 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 206 tggacgtcggcaacaacgactacct 230 ||||||||||||||||| ||||||| Sbjct: 70442 tggacgtcggcaacaacaactacct 70418
>dbj|AK110292.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-G01, full insert sequence Length = 1588 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||| ||||||||| | ||||||||||||||||| || ||||||||| Sbjct: 301 gtgtacgtgttgggcgactcgacgctggacgtcggcaacaacaaccacctgccgg 355
>dbj|AK070261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042P13, full insert sequence Length = 1637 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 185 acgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||||||||| |||||||||||| |||||| | |||||||||| Sbjct: 358 acgtgttcggcgactcgacggtggacgtcgggaacaaccagtacctgccgg 408 Score = 40.1 bits (20), Expect = 4.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 283 aggcccaccggccgcttcaccaacggctacaacctcgccgacgtcatc 330 ||||||||||| | |||| ||| ||||||||| |||||||| ||||| Sbjct: 456 aggcccaccggaaggttcagcaatggctacaacgtcgccgacttcatc 503
>ref|XM_463040.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1104 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 193 ggcgactcgcaggtggacgtcggcaacaacgactacctgcc 233 ||||||||||||| ||||||||| |||||| |||||||||| Sbjct: 133 ggcgactcgcaggcggacgtcgggaacaacaactacctgcc 173 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 280 ggcaggcccaccggccgcttcaccaacggctacaacctcgccgac 324 |||| |||||||||| | |||| ||||||||||||| ||| |||| Sbjct: 232 ggcaagcccaccggcaggttcagcaacggctacaacttcgtcgac 276
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence Length = 174910 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 193 ggcgactcgcaggtggacgtcggcaacaacgactacctgcc 233 ||||||||||||| ||||||||| |||||| |||||||||| Sbjct: 17439 ggcgactcgcaggcggacgtcgggaacaacaactacctgcc 17479 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 280 ggcaggcccaccggccgcttcaccaacggctacaacctcgccgac 324 |||| |||||||||| | |||| ||||||||||||| ||| |||| Sbjct: 17538 ggcaagcccaccggcaggttcagcaacggctacaacttcgtcgac 17582
>gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence Length = 1302 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 262 tacggcatggacctccccggcaggcccaccggccgcttcaccaacggctaca 313 |||||||| ||| || ||||| | ||||||||||||||| |||||||||||| Sbjct: 129 tacggcatcgacttcgccggcggccccaccggccgcttctccaacggctaca 180
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 279 cggcaggcccaccggccgcttcaccaacggc 309 ||||| ||||||||||||||||||||||||| Sbjct: 28170954 cggcatgcccaccggccgcttcaccaacggc 28170924 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 ctgccggcgccggcgcccagggcg 252 ||||||||||||||||||| |||| Sbjct: 7306790 ctgccggcgccggcgcccatggcg 7306767
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 279 cggcaggcccaccggccgcttcaccaacggc 309 ||||| ||||||||||||||||||||||||| Sbjct: 26499 cggcatgcccaccggccgcttcaccaacggc 26469
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 279 cggcaggcccaccggccgcttcaccaacggc 309 ||||| ||||||||||||||||||||||||| Sbjct: 154250 cggcatgcccaccggccgcttcaccaacggc 154220
>dbj|AK061122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G04, full insert sequence Length = 1666 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 279 cggcaggcccaccggccgcttcaccaacggc 309 ||||| ||||||||||||||||||||||||| Sbjct: 366 cggcatgcccaccggccgcttcaccaacggc 396
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg 231 |||||||||||||||| ||| ||||| ||||||||| |||||||| Sbjct: 72834 cgtgttcggcgactcgacggttgacgtgggcaacaacaactacctg 72789 Score = 44.1 bits (22), Expect = 0.31 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Minus Query: 184 tacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg-ccggcgccg 240 ||||||||||||||||| || || |||||||||||| |||||||| ||||||||| Sbjct: 77534 tacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccg 77477 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 284 ggcccaccggccgcttcaccaacggctacaac 315 ||||||||||||| |||| |||||| |||||| Sbjct: 77425 ggcccaccggccggttcagcaacgggtacaac 77394
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg 231 |||||||||||||||| ||| ||||| ||||||||| |||||||| Sbjct: 27056 cgtgttcggcgactcgacggttgacgtgggcaacaacaactacctg 27011 Score = 44.1 bits (22), Expect = 0.31 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Minus Query: 184 tacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg-ccggcgccg 240 ||||||||||||||||| || || |||||||||||| |||||||| ||||||||| Sbjct: 31756 tacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccg 31699 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 284 ggcccaccggccgcttcaccaacggctacaac 315 ||||||||||||| |||| |||||| |||||| Sbjct: 31647 ggcccaccggccggttcagcaacgggtacaac 31616
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 190 ttcggcgactcgcaggtggacgtcggcaacaacgactacctg 231 ||||||||||||| | |||||| |||||||||||||||||| Sbjct: 76689 ttcggcgactcgctgtcggacgtgggcaacaacgactacctg 76730
>ref|NM_196893.1| Oryza sativa (japonica cultivar-group) putative early nodulin gene (Enod) related protein (OSJNBa0071K18.9), mRNA Length = 1384 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacct 230 ||||||||||||||||| ||||||| |||||| ||| ||||||| Sbjct: 122 cgtgttcggcgactcgctggtggacaacggcaataacaactacct 166
>ref|XM_463381.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1275 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 102 cttcgtcctcgtcggcgccgtgtgc 126 ||||||||||||||||||||||||| Sbjct: 216 cttcgtcctcgtcggcgccgtgtgc 240
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Minus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacct 230 ||||||||||||||||| ||||||| |||||| ||| ||||||| Sbjct: 103351 cgtgttcggcgactcgctggtggacaacggcaataacaactacct 103307
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacct 230 ||||||||||||||||| ||||||| |||||| ||| ||||||| Sbjct: 16556891 cgtgttcggcgactcgctggtggacaacggcaataacaactacct 16556935
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 102 cttcgtcctcgtcggcgccgtgtgc 126 ||||||||||||||||||||||||| Sbjct: 23443586 cttcgtcctcgtcggcgccgtgtgc 23443610 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 187 gtgttcggcgactcgcaggtggacgtcggcaa 218 |||||||||||||||| ||| |||| |||||| Sbjct: 42249475 gtgttcggcgactcgccggttgacgacggcaa 42249444 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||| |||||||||| Sbjct: 6266764 cccaccggccgctgcaccaacggc 6266787
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 102 cttcgtcctcgtcggcgccgtgtgc 126 ||||||||||||||||||||||||| Sbjct: 6891 cttcgtcctcgtcggcgccgtgtgc 6915
>dbj|AK108201.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C12, full insert sequence Length = 1375 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacct 230 ||||||||||||||||| ||||||| |||||| ||| ||||||| Sbjct: 134 cgtgttcggcgactcgctggtggacaacggcaataacaactacct 178
>dbj|AK059954.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-C12, full insert sequence Length = 1328 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Plus Query: 302 ccaacggctacaacctcgccgacgtcatc 330 ||||||||| ||||||||||||||||||| Sbjct: 76 ccaacggcttcaacctcgccgacgtcatc 104
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacct 230 ||||||||||||||||| ||||||| |||||| ||| ||||||| Sbjct: 16565132 cgtgttcggcgactcgctggtggacaacggcaataacaactacct 16565176
>ref|XM_463028.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 48.1 bits (24), Expect = 0.020 Identities = 45/52 (86%) Strand = Plus / Plus Query: 181 gtgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgc 232 ||||||||| |||||||||||| || |||||| || |||||| || |||||| Sbjct: 97 gtgtacgtgctcggcgactcgctggcggacgtggggaacaacaaccacctgc 148
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01, complete sequence Length = 173074 Score = 48.1 bits (24), Expect = 0.020 Identities = 45/52 (86%) Strand = Plus / Plus Query: 262 tacggcatggacctccccggcaggcccaccggccgcttcaccaacggctaca 313 |||||||| ||| || ||||| | || |||||||||||| |||||||||||| Sbjct: 114050 tacggcatcgacttcgccggcggcccaaccggccgcttctccaacggctaca 114101
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.020 Identities = 45/52 (86%) Strand = Plus / Plus Query: 262 tacggcatggacctccccggcaggcccaccggccgcttcaccaacggctaca 313 |||||||| ||| || ||||| | || |||||||||||| |||||||||||| Sbjct: 20442305 tacggcatcgacttcgccggcggcccaaccggccgcttctccaacggctaca 20442356 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 tcgtcggcgccgtgtgcgcctcga 133 ||||||||| |||||||||||||| Sbjct: 21103901 tcgtcggcgtcgtgtgcgcctcga 21103924
>dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140K23, full insert sequence Length = 1556 Score = 48.1 bits (24), Expect = 0.020 Identities = 45/52 (86%) Strand = Plus / Plus Query: 262 tacggcatggacctccccggcaggcccaccggccgcttcaccaacggctaca 313 |||||||| ||| || ||||| | || |||||||||||| |||||||||||| Sbjct: 296 tacggcatcgacttcgccggcggcccaaccggccgcttctccaacggctaca 347
>ref|XM_463819.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1742 Score = 46.1 bits (23), Expect = 0.080 Identities = 29/31 (93%) Strand = Plus / Plus Query: 279 cggcaggcccaccggccgcttcaccaacggc 309 |||||||||||||||||| |||| ||||||| Sbjct: 551 cggcaggcccaccggccggttcagcaacggc 581
>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0501G04 Length = 156603 Score = 46.1 bits (23), Expect = 0.080 Identities = 29/31 (93%) Strand = Plus / Minus Query: 279 cggcaggcccaccggccgcttcaccaacggc 309 |||||||||||||||||| |||| ||||||| Sbjct: 25558 cggcaggcccaccggccggttcagcaacggc 25528
>dbj|AK106946.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-D11, full insert sequence Length = 1742 Score = 46.1 bits (23), Expect = 0.080 Identities = 29/31 (93%) Strand = Plus / Plus Query: 279 cggcaggcccaccggccgcttcaccaacggc 309 |||||||||||||||||| |||| ||||||| Sbjct: 551 cggcaggcccaccggccggttcagcaacggc 581
>dbj|AK103614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133K20, full insert sequence Length = 1416 Score = 46.1 bits (23), Expect = 0.080 Identities = 29/31 (93%) Strand = Plus / Plus Query: 279 cggcaggcccaccggccgcttcaccaacggc 309 |||||| ||||||||||||| |||||||||| Sbjct: 320 cggcagccccaccggccgctgcaccaacggc 350
>ref|XM_473495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 44.1 bits (22), Expect = 0.31 Identities = 40/46 (86%) Strand = Plus / Plus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg 231 ||||||||| ||||| ||||||||||||||||||| ||| |||| Sbjct: 102 cgtgttcggggactccacggtggacgtcggcaacaacaacttcctg 147
>gb|BT018454.1| Zea mays clone EL01N0408D11.d mRNA sequence Length = 1429 Score = 44.1 bits (22), Expect = 0.31 Identities = 46/54 (85%) Strand = Plus / Plus Query: 182 tgtacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctgccgg 235 ||||||||||||||||||| || |||||| |||| |||| ||||| |||||| Sbjct: 219 tgtacgtgttcggcgactccacggcggacgtgggcaccaacaactacttgccgg 272
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 44.1 bits (22), Expect = 0.31 Identities = 40/46 (86%) Strand = Plus / Minus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg 231 ||||||||| ||||| ||||||||||||||||||| ||| |||| Sbjct: 105499 cgtgttcggggactccacggtggacgtcggcaacaacaacttcctg 105454
>gb|AC154602.3| Mus musculus BAC clone RP23-343M11 from chromosome 17, complete sequence Length = 196564 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 46 cagccacagtgagagcttgcag 67 |||||||||||||||||||||| Sbjct: 120242 cagccacagtgagagcttgcag 120221
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.31 Identities = 40/46 (86%) Strand = Plus / Minus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg 231 ||||||||| ||||| ||||||||||||||||||| ||| |||| Sbjct: 28098274 cgtgttcggggactccacggtggacgtcggcaacaacaacttcctg 28098229
>dbj|AK103585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B12, full insert sequence Length = 1312 Score = 44.1 bits (22), Expect = 0.31 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 184 tacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg-ccggcgccg 240 ||||||||||||||||| || || |||||||||||| |||||||| ||||||||| Sbjct: 111 tacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccg 168 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 284 ggcccaccggccgcttcaccaacggctacaac 315 ||||||||||||| |||| |||||| |||||| Sbjct: 220 ggcccaccggccggttcagcaacgggtacaac 251
>dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121E13, full insert sequence Length = 2958 Score = 44.1 bits (22), Expect = 0.31 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 184 tacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg-ccggcgccg 240 ||||||||||||||||| || || |||||||||||| |||||||| ||||||||| Sbjct: 130 tacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccg 187 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 284 ggcccaccggccgcttcaccaacggctacaac 315 ||||||||||||| |||| |||||| |||||| Sbjct: 239 ggcccaccggccggttcagcaacgggtacaac 270
>dbj|AK059531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D08, full insert sequence Length = 1451 Score = 44.1 bits (22), Expect = 0.31 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 184 tacgtgttcggcgactcgcaggtggacgtcggcaacaacgactacctg-ccggcgccg 240 ||||||||||||||||| || || |||||||||||| |||||||| ||||||||| Sbjct: 130 tacgtgttcggcgactccacggccgatgtcggcaacaacaactacctgaccggcgccg 187 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 284 ggcccaccggccgcttcaccaacggctacaac 315 ||||||||||||| |||| |||||| |||||| Sbjct: 239 ggcccaccggccggttcagcaacgggtacaac 270
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 cggcgccggcgcccagggcga 253 ||||||||||||||||||||| Sbjct: 349627 cggcgccggcgcccagggcga 349647
>ref|XM_465469.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1014 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaac 222 |||||||||||||||| |||||||| ||| |||||| Sbjct: 114 cgtgttcggcgactcgacggtggacgccgggaacaac 150
>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0004M10, complete sequence Length = 152423 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 gacgtcggcaacaacgactacctgc 232 ||||||||||||||| ||||||||| Sbjct: 80833 gacgtcggcaacaacaactacctgc 80857
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 103 ttcgtcctcgtcggcgccgtgtgcg 127 ||||| ||||||||||||||||||| Sbjct: 168321 ttcgtgctcgtcggcgccgtgtgcg 168345
>emb|AJ720475.1| Gallus gallus mRNA for hypothetical protein, clone 18i2 Length = 3781 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gcagcggccatggcgaggagc 87 ||||||||||||||||||||| Sbjct: 12 gcagcggccatggcgaggagc 32
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 caccaacggctacaacctcgc 320 ||||||||||||||||||||| Sbjct: 2840073 caccaacggctacaacctcgc 2840053
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 216 caacaacgactacctgccggcgccggcgc 244 ||||||||| ||||||||||||| ||||| Sbjct: 1616244 caacaacgagtacctgccggcgctggcgc 1616216
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 gacgtcggcaacaacgactacctgc 232 ||||||||||||||| ||||||||| Sbjct: 21912164 gacgtcggcaacaacaactacctgc 21912188
>dbj|AP005650.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078K05 Length = 162901 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 186 cgtgttcggcgactcgcaggtggacgtcggcaacaac 222 |||||||||||||||| |||||||| ||| |||||| Sbjct: 81263 cgtgttcggcgactcgacggtggacgccgggaacaac 81299
>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0409A07 Length = 146663 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 gacgtcggcaacaacgactacctgc 232 ||||||||||||||| ||||||||| Sbjct: 112833 gacgtcggcaacaacaactacctgc 112857
>dbj|AK063071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H02, full insert sequence Length = 987 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 190 ttcggcgactcgcaggtggacgtcggcaacaac 222 ||||||||||||| ||||||| |||||||||| Sbjct: 176 ttcggcgactcgctggtggacagcggcaacaac 208
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 cggcgccggcgcccagggcga 253 ||||||||||||||||||||| Sbjct: 1137797 cggcgccggcgcccagggcga 1137817
>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145890 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 190 ttcggcgactcgcaggtggacgtcggcaacaac 222 ||||||||||||| ||||||| |||||||||| Sbjct: 91641 ttcggcgactcgctggtggacagcggcaacaac 91673
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 ccggcgccggcgcccagggcgaac 255 ||||||||||||||| |||||||| Sbjct: 51137 ccggcgccggcgcccggggcgaac 51160
>ref|NM_188436.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1095 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||| |||||||||| Sbjct: 205 cccaccggccgctgcaccaacggc 228
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 cggcgcccagggcgaaccgg 258 |||||||||||||||||||| Sbjct: 1769884 cggcgcccagggcgaaccgg 1769903
>ref|XM_475287.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 771 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 tcgtcggcgccgtgtgcgcctcga 133 ||||||||| |||||||||||||| Sbjct: 314 tcgtcggcgtcgtgtgcgcctcga 337
>ref|XM_477181.1| Oryza sativa (japonica cultivar-group), mRNA Length = 971 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 ctgccggcgccggcgcccagggcg 252 ||||||||||||||||||| |||| Sbjct: 89 ctgccggcgccggcgcccatggcg 112
>ref|XM_363147.1| Magnaporthe grisea 70-15 hypothetical protein (MG08731.4) partial cds Length = 2499 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gccggcgccggcgcccaggg 250 |||||||||||||||||||| Sbjct: 1083 gccggcgccggcgcccaggg 1102
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07, complete sequence Length = 106166 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 tcgtcggcgccgtgtgcgcctcga 133 ||||||||| |||||||||||||| Sbjct: 82766 tcgtcggcgtcgtgtgcgcctcga 82789
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 288 caccggccgcttcaccaacggctacaac 315 |||| |||||||||||| |||||||||| Sbjct: 5722588 caccagccgcttcaccagcggctacaac 5722561
>gb|AC147618.3| Mus musculus chromosome 19 clone RP24-245M20, complete sequence Length = 172863 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 aggagcattgctctgctctgcttc 105 |||||||||| ||||||||||||| Sbjct: 114308 aggagcattggtctgctctgcttc 114285
>gb|AC128739.4| Mus musculus BAC clone RP24-168G14 from chromosome 19, complete sequence Length = 195342 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 aggagcattgctctgctctgcttc 105 |||||||||| ||||||||||||| Sbjct: 14216 aggagcattggtctgctctgcttc 14193
>emb|AL162754.2|NMA3Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 3/7 Length = 311321 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 caacggctacaacctcgccg 322 |||||||||||||||||||| Sbjct: 310045 caacggctacaacctcgccg 310064
>emb|CR932808.1| Mus musculus chromosome 2, clone RPCI-21-370D12 strain 129/Sv, complete sequence Length = 163435 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 agcattgctctgctctgctt 104 |||||||||||||||||||| Sbjct: 95307 agcattgctctgctctgctt 95288
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cgccggcgcccagggcgaac 255 |||||||||||||||||||| Sbjct: 1728765 cgccggcgcccagggcgaac 1728784
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 caacggctacaacctcgccg 322 |||||||||||||||||||| Sbjct: 853752 caacggctacaacctcgccg 853771
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||||| |||||||| Sbjct: 20970919 cccaccggccgcttctccaacggc 20970896 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||||| |||||||| Sbjct: 2448642 cccaccggccgcttctccaacggc 2448665
>gb|AC010148.13| Homo sapiens BAC clone RP11-367B19 from 2, complete sequence Length = 231562 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 cttgcctcttgctagctacc 44 |||||||||||||||||||| Sbjct: 199940 cttgcctcttgctagctacc 199959
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0401G10 Length = 160704 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 187 gtgttcggcgactcgcaggtggacgtcggcaa 218 |||||||||||||||| ||| |||| |||||| Sbjct: 21432 gtgttcggcgactcgccggttgacgacggcaa 21401
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ccagggcgaaccggccgtac 264 |||||||||||||||||||| Sbjct: 7136365 ccagggcgaaccggccgtac 7136384 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cttcgtcctcgtcggcgccg 121 |||||||||||||||||||| Sbjct: 2382461 cttcgtcctcgtcggcgccg 2382442
>gb|AE004746.1| Pseudomonas aeruginosa PAO1, section 307 of 529 of the complete genome Length = 10596 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cgccggcgcccagggcgaac 255 |||||||||||||||||||| Sbjct: 654 cgccggcgcccagggcgaac 635
>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17 Length = 180186 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||| |||||||||| Sbjct: 128962 cccaccggccgctgcaccaacggc 128985
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||| |||||||||| Sbjct: 37830 cccaccggccgctgcaccaacggc 37853
>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0095O23 Length = 159792 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||||| |||||||| Sbjct: 127052 cccaccggccgcttctccaacggc 127075
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0406E03 Length = 201069 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||||| |||||||| Sbjct: 35232 cccaccggccgcttctccaacggc 35255
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ggcgccggcgcccagggcga 253 |||||||||||||||||||| Sbjct: 3601659 ggcgccggcgcccagggcga 3601640
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1274F11 Length = 171257 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||||| |||||||| Sbjct: 63008 cccaccggccgcttctccaacggc 62985
>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0086N05 Length = 163670 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 ctgccggcgccggcgcccagggcg 252 ||||||||||||||||||| |||| Sbjct: 33471 ctgccggcgccggcgcccatggcg 33448
>dbj|AK112006.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B09, full insert sequence Length = 1300 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||||| |||||||| Sbjct: 253 cccaccggccgcttctccaacggc 276
>dbj|AK111927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-C10, full insert sequence Length = 1463 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||||| |||||||| Sbjct: 277 cccaccggccgcttctccaacggc 300
>dbj|AK105422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B12, full insert sequence Length = 1772 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||| |||||||||| Sbjct: 632 cccaccggccgctgcaccaacggc 655
>dbj|AK069953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037H24, full insert sequence Length = 970 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 ctgccggcgccggcgcccagggcg 252 ||||||||||||||||||| |||| Sbjct: 88 ctgccggcgccggcgcccatggcg 111
>dbj|AK059766.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G04, full insert sequence Length = 1134 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||||| |||||||| Sbjct: 253 cccaccggccgcttctccaacggc 276
>dbj|AK059484.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F09, full insert sequence Length = 1326 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cccaccggccgcttcaccaacggc 309 ||||||||||||||| |||||||| Sbjct: 256 cccaccggccgcttctccaacggc 279
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 caacggctacaacctcgccg 322 |||||||||||||||||||| Sbjct: 397963 caacggctacaacctcgccg 397982
>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete sequence Length = 207901 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 ctgggtttcgagatgagccccaag 363 |||||||||||||| ||||||||| Sbjct: 173276 ctgggtttcgagatcagccccaag 173253
>emb|AL844538.9| Mouse DNA sequence from clone RP23-289K19 on chromosome 2, complete sequence Length = 180252 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 agcattgctctgctctgctt 104 |||||||||||||||||||| Sbjct: 26586 agcattgctctgctctgctt 26605 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,065,533 Number of Sequences: 3902068 Number of extensions: 2065533 Number of successful extensions: 55959 Number of sequences better than 10.0: 104 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53736 Number of HSP's gapped (non-prelim): 2217 length of query: 369 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 347 effective length of database: 17,147,199,772 effective search space: 5950078320884 effective search space used: 5950078320884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
