| Clone Name | bast43h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188014.1| Oryza sativa (japonica cultivar-group), Ozsa8434 predicted mRNA Length = 930 Score = 97.6 bits (49), Expect = 2e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 171 gccatccgatacgccgtggtggatgccttcgcggctgagccgttcaagggcaaccccgcc 230 ||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct: 13 gccatccagtacgccgtggtggacgcgttcgcggccgagccgttcaagggcaaccccgcc 72 Query: 231 gcggtatgcctcc 243 || |||||||||| Sbjct: 73 gccgtatgcctcc 85
>dbj|AK101084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I08, full insert sequence Length = 1161 Score = 97.6 bits (49), Expect = 2e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 171 gccatccgatacgccgtggtggatgccttcgcggctgagccgttcaagggcaaccccgcc 230 ||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct: 95 gccatccagtacgccgtggtggacgcgttcgcggccgagccgttcaagggcaaccccgcc 154 Query: 231 gcggtatgcctcc 243 || |||||||||| Sbjct: 155 gccgtatgcctcc 167
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 79.8 bits (40), Expect = 4e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 188 ggtggatgccttcgcggctgagccgttcaagggcaaccccgccgcggtatgcctcc 243 |||||| || |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 9116217 ggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgccgtatgcctcc 9116162
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0499C11 Length = 151369 Score = 79.8 bits (40), Expect = 4e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 188 ggtggatgccttcgcggctgagccgttcaagggcaaccccgccgcggtatgcctcc 243 |||||| || |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 145224 ggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgccgtatgcctcc 145169
>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01 Length = 168655 Score = 79.8 bits (40), Expect = 4e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 188 ggtggatgccttcgcggctgagccgttcaagggcaaccccgccgcggtatgcctcc 243 |||||| || |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 16599 ggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgccgtatgcctcc 16544
>gb|AC104741.2| Homo sapiens chromosome 3 clone RP11-228H5, complete sequence Length = 168433 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 aaatgggcaaaagggccatcc 177 ||||||||||||||||||||| Sbjct: 94651 aaatgggcaaaagggccatcc 94631
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 aagggcaaccccgccgcggtatgc 239 ||||||||||||||||||| |||| Sbjct: 157225 aagggcaaccccgccgcggaatgc 157202 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 752,227 Number of Sequences: 3902068 Number of extensions: 752227 Number of successful extensions: 12314 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12300 Number of HSP's gapped (non-prelim): 14 length of query: 243 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 221 effective length of database: 17,147,199,772 effective search space: 3789531149612 effective search space used: 3789531149612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)