ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast43g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466191.1| Oryza sativa (japonica cultivar-group), mRNA 92 1e-15
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
3dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
4dbj|AK101886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
5gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome... 64 2e-07
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
7dbj|AK111831.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
8dbj|AK100761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
9dbj|AK100215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 64 2e-07
11gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156... 54 2e-04
12gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14... 48 0.015
13gb|AC157604.2| Ornithorhynchus anatinus chromosome UNK clone OAB... 46 0.058
14dbj|AK125865.1| Homo sapiens cDNA FLJ43877 fis, clone TESTI4008840 42 0.91
15gb|AC115108.2| Homo sapiens PAC clone RP5-1188A4 from 7, complet... 42 0.91
16gb|AC006014.3| Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21... 42 0.91
17gb|AC115106.2| Homo sapiens PAC clone RP5-864I6 from 7, complete... 42 0.91
18gb|AY919562.1| Human echovirus 12 isolate 10571 VP1 gene, partia... 42 0.91
19emb|X14112.1|HE1CG Human herpesvirus 1 complete genome 40 3.6
20gb|AY043329.1| Streptomyces lividans ethidium bromide resistance... 40 3.6
21emb|AL389916.15| Human DNA sequence from clone RP11-470J18 on ch... 40 3.6
22emb|BX294147.1| Pirellula sp. strain 1 complete genome; segment ... 40 3.6
23emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 40 3.6
24emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chr... 40 3.6
25dbj|AB252708.1| Human herpesvirus 1 UL17 gene for tegument prote... 40 3.6
26dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
27dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
28dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
29emb|BX649570.7| Zebrafish DNA sequence from clone CH211-13L22 in... 40 3.6
30emb|BX548076.6| Zebrafish DNA sequence from clone CH211-154A22 i... 40 3.6
31emb|BX004995.15| Zebrafish DNA sequence from clone CH211-179G4 i... 40 3.6
32gb|AY105253.1| Zea mays PCO131351 mRNA sequence 40 3.6 
>ref|XM_466191.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2423

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 79/90 (87%)
 Strand = Plus / Plus

                                                                       
Query: 187 taaactccacacaagactgagactctgggagtttgcagaccgatatatatttgaaccaac 246
           |||||| ||||||||||||||||| ||||||||  ||||||| ||| ||||||| || | 
Sbjct: 266 taaacttcacacaagactgagactatgggagttcccagaccgctatgtatttgagccgat 325

                                         
Query: 247 tgatggtcttgctgacttatatttgtcagc 276
           |||||||||||||||||| ||| |||||||
Sbjct: 326 tgatggtcttgctgacttgtatctgtcagc 355
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                            
Query: 187      taaactccacacaagactgagactctgggagtttgcagaccgatatatatttgaaccaac 246
                |||||| ||||||||||||||||| ||||||||  ||||||| ||| ||||||| || | 
Sbjct: 20950950 taaacttcacacaagactgagactatgggagttcccagaccgctatgtatttgagccgat 20950891

                                              
Query: 247      tgatggtcttgctgacttatatttgtcagc 276
                |||||||||||||||||| ||| |||||||
Sbjct: 20950890 tgatggtcttgctgacttgtatctgtcagc 20950861
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>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0470G10
          Length = 145419

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                         
Query: 187   taaactccacacaagactgagactctgggagtttgcagaccgatatatatttgaaccaac 246
             |||||| ||||||||||||||||| ||||||||  ||||||| ||| ||||||| || | 
Sbjct: 74422 taaacttcacacaagactgagactatgggagttcccagaccgctatgtatttgagccgat 74363

                                           
Query: 247   tgatggtcttgctgacttatatttgtcagc 276
             |||||||||||||||||| ||| |||||||
Sbjct: 74362 tgatggtcttgctgacttgtatctgtcagc 74333
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>dbj|AK101886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070L24, full
           insert sequence
          Length = 2423

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 79/90 (87%)
 Strand = Plus / Plus

                                                                       
Query: 187 taaactccacacaagactgagactctgggagtttgcagaccgatatatatttgaaccaac 246
           |||||| ||||||||||||||||| ||||||||  ||||||| ||| ||||||| || | 
Sbjct: 266 taaacttcacacaagactgagactatgggagttcccagaccgctatgtatttgagccgat 325

                                         
Query: 247 tgatggtcttgctgacttatatttgtcagc 276
           |||||||||||||||||| ||| |||||||
Sbjct: 326 tgatggtcttgctgacttgtatctgtcagc 355
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>gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0066C04, complete sequence
          Length = 133944

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                         
Query: 194   cacacaagactgagactctgggagtttgcagaccgatatatatttgaaccaactgatggt 253
             ||||||||||| || || ||||||||||||||||| ||  |||||||||||  ||| |||
Sbjct: 48267 cacacaagactaaggctgtgggagtttgcagaccgttacgtatttgaaccagttgacggt 48326

                     
Query: 254   cttgctga 261
             ||||||||
Sbjct: 48327 cttgctga 48334
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 194      cacacaagactgagactctgggagtttgcagaccgatatatatttgaaccaactgatggt 253
                ||||||||||| || || ||||||||||||||||| ||  |||||||||||  ||| |||
Sbjct: 11699459 cacacaagactaaggctgtgggagtttgcagaccgttacgtatttgaaccagttgacggt 11699400

                        
Query: 254      cttgctga 261
                ||||||||
Sbjct: 11699399 cttgctga 11699392
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>dbj|AK111831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128H24, full
           insert sequence
          Length = 1342

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                       
Query: 194 cacacaagactgagactctgggagtttgcagaccgatatatatttgaaccaactgatggt 253
           ||||||||||| || || ||||||||||||||||| ||  |||||||||||  ||| |||
Sbjct: 140 cacacaagactaaggctgtgggagtttgcagaccgttacgtatttgaaccagttgacggt 199

                   
Query: 254 cttgctga 261
           ||||||||
Sbjct: 200 cttgctga 207
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>dbj|AK100761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119H14, full
           insert sequence
          Length = 2184

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                       
Query: 194 cacacaagactgagactctgggagtttgcagaccgatatatatttgaaccaactgatggt 253
           ||||||||||| || || ||||||||||||||||| ||  |||||||||||  ||| |||
Sbjct: 140 cacacaagactaaggctgtgggagtttgcagaccgttacgtatttgaaccagttgacggt 199

                   
Query: 254 cttgctga 261
           ||||||||
Sbjct: 200 cttgctga 207
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>dbj|AK100215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044O16, full
           insert sequence
          Length = 2174

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                       
Query: 194 cacacaagactgagactctgggagtttgcagaccgatatatatttgaaccaactgatggt 253
           ||||||||||| || || ||||||||||||||||| ||  |||||||||||  ||| |||
Sbjct: 199 cacacaagactaaggctgtgggagtttgcagaccgttacgtatttgaaccagttgacggt 258

                   
Query: 254 cttgctga 261
           ||||||||
Sbjct: 259 cttgctga 266
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 194      cacacaagactgagactctgggagtttgcagaccgatatatatttgaaccaactgatggt 253
                ||||||||||| || || ||||||||||||||||| ||  |||||||||||  ||| |||
Sbjct: 11778648 cacacaagactaaggctgtgggagtttgcagaccgttacgtatttgaaccagttgacggt 11778589

                        
Query: 254      cttgctga 261
                ||||||||
Sbjct: 11778588 cttgctga 11778581
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>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete
           sequence
          Length = 187012

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 212 tgggagtttgcagaccgatatatatttgaaccaactgatggtcttgctgac 262
           ||||||||||||||||| ||| ||||||||||   |||||| |||||||||
Sbjct: 167 tgggagtttgcagaccgttatgtatttgaaccggttgatggccttgctgac 117
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>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 212  tgggagtttgcagaccgatatatatttgaacc 243
            ||||||||||||||||| ||| ||||||||||
Sbjct: 3054 tgggagtttgcagaccgttatgtatttgaacc 3023
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>gb|AC157604.2| Ornithorhynchus anatinus chromosome UNK clone OABb-185A1, complete
             sequence
          Length = 136586

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 109   ctccgcccacgactctctcccccgccg 135
             |||||||| ||||||||||||||||||
Sbjct: 18906 ctccgccctcgactctctcccccgccg 18880
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>dbj|AK125865.1| Homo sapiens cDNA FLJ43877 fis, clone TESTI4008840
          Length = 3721

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 203  ctgagactctgggagtttgca 223
            |||||||||||||||||||||
Sbjct: 1428 ctgagactctgggagtttgca 1448
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>gb|AC115108.2| Homo sapiens PAC clone RP5-1188A4 from 7, complete sequence
          Length = 108048

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 203   ctgagactctgggagtttgca 223
             |||||||||||||||||||||
Sbjct: 94987 ctgagactctgggagtttgca 94967
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>gb|AC006014.3| Homo sapiens PAC clone RP5-953A4 from 7q11.23-q21.1, complete sequence
          Length = 127761

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 203    ctgagactctgggagtttgca 223
              |||||||||||||||||||||
Sbjct: 101537 ctgagactctgggagtttgca 101517
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>gb|AC115106.2| Homo sapiens PAC clone RP5-864I6 from 7, complete sequence
          Length = 117051

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 203   ctgagactctgggagtttgca 223
             |||||||||||||||||||||
Sbjct: 98908 ctgagactctgggagtttgca 98888
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>gb|AY919562.1| Human echovirus 12 isolate 10571 VP1 gene, partial cds
          Length = 325

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 170 gatgcaaacccgtcatgtaaa 190
           |||||||||||||||||||||
Sbjct: 37  gatgcaaacccgtcatgtaaa 57
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>emb|X14112.1|HE1CG Human herpesvirus 1 complete genome
          Length = 152261

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    catcgccgccgaggtcgcct 78
             ||||||||||||||||||||
Sbjct: 32085 catcgccgccgaggtcgcct 32066
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>gb|AY043329.1| Streptomyces lividans ethidium bromide resistance operon, commplete
           sequence
          Length = 1792

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  ccatcgccgccgaggtcgcc 77
           ||||||||||||||||||||
Sbjct: 409 ccatcgccgccgaggtcgcc 428
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>emb|AL389916.15| Human DNA sequence from clone RP11-470J18 on chromosome 10, complete
             sequence
          Length = 68567

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   agactctgggagtttgcaga 225
             ||||||||||||||||||||
Sbjct: 54195 agactctgggagtttgcaga 54214
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>emb|BX294147.1| Pirellula sp. strain 1 complete genome; segment 15/24
          Length = 314450

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     caccttccgccgctccggcg 105
              ||||||||||||||||||||
Sbjct: 300565 caccttccgccgctccggcg 300584
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>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     ccatcgccgccgaggtcgcc 77
              ||||||||||||||||||||
Sbjct: 233461 ccatcgccgccgaggtcgcc 233442
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>emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chromosome 11 Contains three
              novel genes, a ribosomal protein L9 (Rpl9) pseudogene, a
              transcription elongation factor A (SII) 3 (Tcea3)
              pseudogene and the 3' end of the Fbxw1b gene for F-box and
              WD-40 domain protein 1B, complete sequence
          Length = 251085

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    gccaaaagggtatcccatca 155
              ||||||||||||||||||||
Sbjct: 218349 gccaaaagggtatcccatca 218330
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>dbj|AB252708.1| Human herpesvirus 1 UL17 gene for tegument protein, complete cds
          Length = 2112

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   catcgccgccgaggtcgcct 78
            ||||||||||||||||||||
Sbjct: 1413 catcgccgccgaggtcgcct 1432
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 177      acccgtcatgtaaactccacacaa 200
                ||||||||||||| ||||||||||
Sbjct: 36589316 acccgtcatgtaacctccacacaa 36589339
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>dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0414E03
          Length = 139598

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 177    acccgtcatgtaaactccacacaa 200
              ||||||||||||| ||||||||||
Sbjct: 102691 acccgtcatgtaacctccacacaa 102714
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>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0529H11
          Length = 165969

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 177   acccgtcatgtaaactccacacaa 200
             ||||||||||||| ||||||||||
Sbjct: 62582 acccgtcatgtaacctccacacaa 62605
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>emb|BX649570.7| Zebrafish DNA sequence from clone CH211-13L22 in linkage group 21,
             complete sequence
          Length = 157398

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   catgtaaactccacacaaga 202
             ||||||||||||||||||||
Sbjct: 70324 catgtaaactccacacaaga 70305
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>emb|BX548076.6| Zebrafish DNA sequence from clone CH211-154A22 in linkage group 15,
             complete sequence
          Length = 175161

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   catgtaaactccacacaaga 202
             ||||||||||||||||||||
Sbjct: 81870 catgtaaactccacacaaga 81851
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>emb|BX004995.15| Zebrafish DNA sequence from clone CH211-179G4 in linkage group 20,
              complete sequence
          Length = 156160

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    catgtaaactccacacaaga 202
              ||||||||||||||||||||
Sbjct: 127386 catgtaaactccacacaaga 127405
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>gb|AY105253.1| Zea mays PCO131351 mRNA sequence
          Length = 808

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  cgccgccgaggtcgcctgcg 81
           ||||||||||||||||||||
Sbjct: 144 cgccgccgaggtcgcctgcg 125


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,263,999
Number of Sequences: 3902068
Number of extensions: 2263999
Number of successful extensions: 41020
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40906
Number of HSP's gapped (non-prelim): 114
length of query: 276
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 254
effective length of database: 17,147,199,772
effective search space: 4355388742088
effective search space used: 4355388742088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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