ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast43g01 |
|---|---|
| Clone Library Name | barley_pub |
>COPE_ARATH (O64748) Probable coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 293 Score = 186 bits (473), Expect = 9e-48 Identities = 95/128 (74%), Positives = 108/128 (84%), Gaps = 2/128 (1%) Frame = +3 Query: 3 LRNLFYLGAYQSAINNSDVPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSSAATSLQ 182 LRN FYLGAYQ+AINNS++ L + A ERD +VFRSYIALGSYQLVISEID SAAT LQ Sbjct: 14 LRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVISEIDESAATPLQ 73 Query: 183 AVKLLALYLT--GDKEGAISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTHT 356 AVKLLA+YL+ +KE ISSLKEWL+DS IG+N LRLIAGIIFMHE+DYNE LKHTH Sbjct: 74 AVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHA 133 Query: 357 GGTLDLHA 380 GGT+DL+A Sbjct: 134 GGTMDLYA 141
>COPE_CRIGR (Q60445) Coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) (LDLF) Length = 307 Score = 79.0 bits (193), Expect = 3e-15 Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 3/129 (2%) Frame = +3 Query: 3 LRNLFYLGAYQSAINNSDVPGLDA-DAAAERDVIVFRSYIALGSYQLVISEIDSSAATSL 179 ++N FY+G+YQ IN + L + D ERDV ++R+YIA Y +V+ EI S+A L Sbjct: 21 VKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGVVLDEIKPSSAPEL 80 Query: 180 QAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTH 353 QAV++ A YL + ++ + L +S S +N L+A ++ H+Q+ + AL+ H Sbjct: 81 QAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAALRTLH 140 Query: 354 TGGTLDLHA 380 G +L+ A Sbjct: 141 QGDSLECMA 149
>COPE_MOUSE (O89079) Coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 307 Score = 77.0 bits (188), Expect = 1e-14 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%) Frame = +3 Query: 3 LRNLFYLGAYQSAINNSDVPGLDA-DAAAERDVIVFRSYIALGSYQLVISEIDSSAATSL 179 ++N FY+G+YQ IN + L + + ERDV ++R+Y+A Y +V+ EI S+A L Sbjct: 21 VKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPSSAPEL 80 Query: 180 QAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTH 353 QAV++ A YL + ++ + L +S S +N L+A I+ H+Q+ + AL+ H Sbjct: 81 QAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLH 140 Query: 354 TGGTLDLHA 380 G L+ A Sbjct: 141 QGDGLECMA 149
>COPE_HUMAN (O14579) Coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 307 Score = 77.0 bits (188), Expect = 1e-14 Identities = 43/129 (33%), Positives = 76/129 (58%), Gaps = 3/129 (2%) Frame = +3 Query: 3 LRNLFYLGAYQSAINNSDVPGLDA-DAAAERDVIVFRSYIALGSYQLVISEIDSSAATSL 179 ++N FY+G+YQ IN + L + + ERDV ++R+Y+A + +V+ EI S+A L Sbjct: 21 VKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPEL 80 Query: 180 QAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTH 353 QAV++ A YL + ++ ++ L +S S +N L+A I++H+Q+ + AL+ H Sbjct: 81 QAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALH 140 Query: 354 TGGTLDLHA 380 G +L+ A Sbjct: 141 QGDSLECTA 149
>COPE_BOVIN (Q28104) Coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 307 Score = 75.5 bits (184), Expect = 3e-14 Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 3/129 (2%) Frame = +3 Query: 3 LRNLFYLGAYQSAINNSD-VPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSSAATSL 179 ++N FY+G+YQ IN + V + ERDV ++R+Y+A Y +V+ EI S+A L Sbjct: 21 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPEL 80 Query: 180 QAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTH 353 QAV++ A YL ++ ++ L +S S +N L+A I+ ++Q+ + AL+ H Sbjct: 81 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 140 Query: 354 TGGTLDLHA 380 G +L+ A Sbjct: 141 QGDSLECMA 149
>COPE_CAEEL (O62246) Probable coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 292 Score = 41.6 bits (96), Expect = 5e-04 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 4/106 (3%) Frame = +3 Query: 3 LRNLFYLGAYQSAINNS-DVPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSSA-ATS 176 +RN F+LG+YQS I + + + E+DV ++RSYIA G + + EI ++ + Sbjct: 8 IRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAATKSAD 67 Query: 177 LQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIAGII 308 L AV+ A + K+ ++ ++E ++ I S L A I+ Sbjct: 68 LAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATIL 113
>Y447_TREPA (O83461) Hypothetical protein TP0447 precursor| Length = 374 Score = 33.9 bits (76), Expect = 0.098 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = +3 Query: 132 YQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKEWLSDSAIGSNPVLRLIAGIIF 311 Y L+ S ++ A L A+ L + + ++S L +WL DSA + P L+ G +F Sbjct: 98 YALLKSRGETDACEVLDAIFLT--HAPHVFQNSVSKLLQWLKDSA--AFPEAELLLGKVF 153 Query: 312 MHEQDYNEALKH 347 E +Y +AL+H Sbjct: 154 EGEGEYAQALQH 165
>YIT4_YEAST (P40570) Hypothetical protein YIR014W| Length = 242 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/37 (45%), Positives = 26/37 (70%) Frame = +3 Query: 135 QLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLK 245 Q+VI I+ S ++SLQ VKL+ L ++EGA++ LK Sbjct: 165 QIVI--INGSLSSSLQNVKLIVKELNAEEEGALNILK 199
>TTC5_RAT (Q5BK48) Tetratricopeptide repeat protein 5 (TPR repeat protein 5)| Length = 440 Score = 30.0 bits (66), Expect = 1.4 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 1/101 (0%) Frame = +3 Query: 72 ADAAAERDVIVFRSYIALGS-YQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKE 248 A A + DV+ RS+ LG+ Y + + S QA L+ Y +K Sbjct: 168 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA---LSAYAQAEKV-------- 216 Query: 249 WLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTHTGGTLD 371 D SNP L L + +E+ Y EAL+ TLD Sbjct: 217 ---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAATLD 254
>GP6D_CHLPS (Q46264) Virulence plasmid protein pGP6-D| Length = 246 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = +3 Query: 99 IVFRS----YIALGSYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAI 233 +VFR+ Y ALG Y+L IS D + + Q++ YL ++G++ Sbjct: 112 LVFRTKSSAYNALGYYELFISLPDKNTKSLFQSIPYKTAYLLASRKGSV 160
>DPO3A_MYCLE (Q9X7F0) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1177 Score = 29.3 bits (64), Expect = 2.4 Identities = 26/78 (33%), Positives = 37/78 (47%) Frame = +3 Query: 69 DADAAAERDVIVFRSYIALGSYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKE 248 DA V+V IAL + QLV+ + + AV LL T DK +++LK+ Sbjct: 1068 DAVVLVNAKVVVRDDRIALIANQLVVPDFSNVQEDRPLAVSLLTRQCTFDK---VNALKQ 1124 Query: 249 WLSDSAIGSNPVLRLIAG 302 L+ S LRLI+G Sbjct: 1125 VLARHPGTSQVHLRLISG 1142
>DXS_BUCAI (P57536) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 608 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Frame = +3 Query: 78 AAAERDVIVFRSYIALGSYQLVISEIDSSAATSLQ------AVKLLALYLTGDKEGAISS 239 A AE+ + F + +A+ Y+ V+S + + A++ L++ D+ G + + Sbjct: 354 AIAEQHAVTFAAGLAISGYKPVVSIYSTFFQRAYDQLIHDIALQKLSVLFAVDRAGIVGN 413 Query: 240 LKEWLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTHTG 359 + + + LR I GI+ M + NE + +TG Sbjct: 414 --DGQTHQGVFDLAYLRCIPGIVIMTPSNENECRQMLYTG 451
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/76 (27%), Positives = 37/76 (48%) Frame = +3 Query: 69 DADAAAERDVIVFRSYIALGSYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKE 248 D +A +R+ + RS ++ + ++DS+ L+ L L L GD G + +L+E Sbjct: 667 DRRSARKRNALAARS-----RKRISLEDLDSA----LKETSQLNLILKGDNAGTVEALEE 717 Query: 249 WLSDSAIGSNPVLRLI 296 L + VLR+I Sbjct: 718 ALMGIQVDDEVVLRVI 733
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/76 (27%), Positives = 37/76 (48%) Frame = +3 Query: 69 DADAAAERDVIVFRSYIALGSYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKE 248 D +A +R+ + RS ++ + ++DS+ L+ L L L GD G + +L+E Sbjct: 667 DRRSARKRNALAARS-----RKRISLEDLDSA----LKETSQLNLILKGDNAGTVEALEE 717 Query: 249 WLSDSAIGSNPVLRLI 296 L + VLR+I Sbjct: 718 ALMGIQVDDEVVLRVI 733
>YKR5_YEAST (P34240) Hypothetical 55.4 kDa protein in STE3-GIN10 intergenic| region Length = 503 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 Query: 362 SPSMCVLESLVVVLLMHKYNSSNQSQNRIASYG 264 S +C+L +L V LL ++S SQ+++ +YG Sbjct: 14 SSVLCILGALCVPLLSVAFDSKRNSQSKLVNYG 46
>MOAA_METAC (Q8TUG2) Probable molybdenum cofactor biosynthesis protein A| Length = 334 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = +3 Query: 126 GSYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKEWLSDSAIGSNPVLRLI 296 G+ + VI IDS+ L VKL + L G + I ++ E++ G +L+LI Sbjct: 155 GTLEKVIKGIDSAVEAGLTPVKLNMVLLKGVNDNEIDAMMEFI--RPYGGKVILQLI 209
>TTC5_MOUSE (Q99LG4) Tetratricopeptide repeat protein 5 (TPR repeat protein 5)| Length = 440 Score = 28.1 bits (61), Expect = 5.4 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Frame = +3 Query: 72 ADAAAERDVIVFRSYIALGS-YQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKE 248 A A + DV+ RS+ LG+ Y + + S QA L+ Y +K Sbjct: 168 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA---LSAYAQAEKV-------- 216 Query: 249 WLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTHTGGTLD 371 D SNP L L + +E+ Y EAL+ LD Sbjct: 217 ---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 254
>PHOL_MYCLE (Q49751) PhoH-like protein| Length = 349 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = -3 Query: 284 NRIASYG*ITQPFLQAGDRTFLVSGEVEREQLDGLQXXXXXRVDLADHQLVGSEGDVGAE 105 +++ G +TQ L G R+ L + E +D + VD+ H+LV D AE Sbjct: 268 SKVVVTGDVTQIDLPGGARSGLRAAVDILEHIDDIYVAELASVDVVRHRLVSEIVDAYAE 327 Query: 104 DDDVALG 84 ++ LG Sbjct: 328 YEEHDLG 334
>BIGA_SALTY (P25927) Putative surface-exposed virulence protein bigA precursor| Length = 1953 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +3 Query: 153 IDSSAATSLQAVKLLALYLTGDKEGAISSLKEWLSDSAIGS 275 ID++ +T++ ALY+ GD I+ + +S A+G+ Sbjct: 501 IDNAGSTTVSGADATALYIEGDNALVINEGNQTISGGAVGT 541
>SSY3_SOLTU (Q43846) Soluble starch synthase 3, chloroplast precursor (EC| 2.4.1.21) (SS III) (Soluble starch synthase III) Length = 1230 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 328 TTRLSSTHILGELWTC 375 TTRL+ TH+ G+ W+C Sbjct: 380 TTRLTETHLNGDWWSC 395
>TTC5_HUMAN (Q8N0Z6) Tetratricopeptide repeat protein 5 (TPR repeat protein 5)| Length = 440 Score = 27.3 bits (59), Expect = 9.2 Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Frame = +3 Query: 72 ADAAAERDVIVFRSYIALG-SYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKE 248 A A + DV RS+ LG SY + + S QA L+ Y +K Sbjct: 168 AKLAVQMDVHDGRSWYILGNSYLSLYFSTGQNPKISQQA---LSAYAQAEKV-------- 216 Query: 249 WLSDSAIGSNPVLRLIAGIIFMHEQDYNEALKHTHTGGTLD 371 D SNP L L + +E+ Y EAL+ LD Sbjct: 217 ---DRKASSNPDLHLNRATLHKYEESYGEALEGFSRAAALD 254
>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E receptor) (APOER) (CD91 antigen) Length = 4544 Score = 27.3 bits (59), Expect = 9.2 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%) Frame = +3 Query: 114 YIALGSYQLVISEIDSSAATSLQAV-----KLLALYLTGDKEGAISSLKEWLS--DSAIG 272 +I+ G++ + +D S + A+ K AL + GDK + E + A G Sbjct: 1758 WISSGNHTINRCNLDGSGLEVIDAMRSQLGKATALAIMGDKLWWADQVSEKMGTCSKADG 1817 Query: 273 SNPVLRLIAGIIFMHEQDYNEALKHTHTG 359 S V+ + + MH + Y+E+++ H G Sbjct: 1818 SGSVVLRNSTTLVMHMKVYDESIQLDHKG 1846 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,383,519 Number of Sequences: 219361 Number of extensions: 735817 Number of successful extensions: 2258 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2245 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
