ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast43f01 |
|---|---|
| Clone Library Name | barley_pub |
>Y1903_CORGL (Q6M4B7) Hypothetical RNA methyltransferase Cgl1903/cg2084 (EC| 2.1.1.-) Length = 412 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 82 IGAKDGKVSHVRASAPASMCDLQIGARNHRWAAGE 186 IG DG+V V+ P + D++I +WA GE Sbjct: 27 IGHHDGRVIFVKGGIPGDVVDVEIAQLKKKWARGE 61
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 30.8 bits (68), Expect = 0.82 Identities = 26/91 (28%), Positives = 39/91 (42%) Frame = -2 Query: 384 RCAMDASLPRRTA*APSGTTSTMSPCLCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCG 205 R M +PR + P + P G+ P +H+ + A R+ DG Sbjct: 2507 RRPMSMEMPRPSNNPPLNNPVGLPQHFPPQGL----PVQQHNILGQAFIELRHRAPDG-- 2560 Query: 204 PRSKLPFASSPSVIPSANLQVAHGSRSTSPD 112 RS+LPFA+SPS + + HG+ PD Sbjct: 2561 -RSRLPFAASPSSVIESPSHPRHGNFLPRPD 2590
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like| protein) Length = 349 Score = 30.0 bits (66), Expect = 1.4 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 3/96 (3%) Frame = -2 Query: 360 PRRTA*APSGTTSTMSPCLCPDGMYSTNPDVRHDGIDDAPTTCVPRSCD--GCGPRSKLP 187 P + AP +TS +SP P M S + P + P + P+S P Sbjct: 213 PTTSPPAPPKSTSPVSPSSAP--MTSPPAPMAPKSSSTIPPSSAPMTSPPGSMAPKSSSP 270 Query: 186 FASSPSVIPSANLQVAHGSRSTSP-DMADLAIFGPN 82 ++SP+V PS GS S+SP D + GP+ Sbjct: 271 VSNSPTVSPSL---APGGSTSSSPSDSPSGSAMGPS 303
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 29.6 bits (65), Expect = 1.8 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%) Frame = -2 Query: 360 PRRTA*APSGTTSTMSPCLCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFA 181 P+ T+ A T+ S P+ + T P+++ D P T P S G +S+ Sbjct: 1139 PKPTSQATRSRTNRSS-VKTPEPVVPTAPELQPSTSTDQPVTSEPTSQVTRGRKSRSSVK 1197 Query: 180 SSPSVIPSANLQVAHGSRSTSPDMADLAIFGPNVQETRTRLIRR--RAPDPV 31 + +V+P+A L++ + + P ++ P Q TR R R + P+PV Sbjct: 1198 TPETVVPTA-LELQPSTSTDRPVTSE-----PTSQATRGRKNRSSVKTPEPV 1243
>UN13D_HUMAN (Q70J99) Unc-13 homolog D (Munc13-4)| Length = 1090 Score = 29.6 bits (65), Expect = 1.8 Identities = 24/90 (26%), Positives = 35/90 (38%) Frame = +2 Query: 71 VSCTLGPKMARSAMSGLVLLLPCATCRLALGITDGLLANGNFERGPQPSQLRGTQVVGAS 250 V + P+M S + L R++ DG+LA NF R QP Sbjct: 544 VGDVVSPEMGESLFQLYISLKELCQLRMSSSERDGVLALDNFHRWFQP------------ 591 Query: 251 SIPSWRTSGFVEYIPSGHKQGDMVLVVPEG 340 +IPSW + E + + M +VP G Sbjct: 592 AIPSWLQKTYNEALARVQRAVQMDELVPLG 621
>GNTP_ECOLI (P0AC94) High-affinity gluconate transporter (Gluconate permease 3)| (Gnt-III system) Length = 447 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = +2 Query: 86 GPKMARSAMSGLVLLLPCATCRLALGITDGLLAN---GNFERGPQPSQLRGTQVVGASSI 256 G M + G+++ +P C GL+ GN ER P PS L+ Q V +++ Sbjct: 171 GADMGMVYIYGVLVTIPSVICA-------GLILPKFLGNLER-PTPSFLKADQPVDMNNL 222 Query: 257 PSWRTSGFVEYIPS 298 PS+ S V IP+ Sbjct: 223 PSFGVSILVPLIPA 236
>GNTP_ECO57 (P0AC95) High-affinity gluconate transporter (Gluconate permease 3)| (Gnt-III system) Length = 447 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = +2 Query: 86 GPKMARSAMSGLVLLLPCATCRLALGITDGLLAN---GNFERGPQPSQLRGTQVVGASSI 256 G M + G+++ +P C GL+ GN ER P PS L+ Q V +++ Sbjct: 171 GADMGMVYIYGVLVTIPSVICA-------GLILPKFLGNLER-PTPSFLKADQPVDMNNL 222 Query: 257 PSWRTSGFVEYIPS 298 PS+ S V IP+ Sbjct: 223 PSFGVSILVPLIPA 236
>ERYA1_SACER (Q03131) Erythronolide synthase, modules 1 and 2 (EC 2.3.1.94) (ORF| 1) (6-deoxyerythronolide B synthase I) (DEBS 1) Length = 3491 Score = 29.6 bits (65), Expect = 1.8 Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 7/106 (6%) Frame = +2 Query: 95 MARSAMSGLVLLLPCATCRLALGITDGLLANGNFERGPQPSQLRGTQVVG-------ASS 253 MAR + V A C L G + E P L VV S Sbjct: 2521 MARELLPVPVFAESIAECDAVLSEVAGFSVSEVLEPRPDAPSLERVDVVQPVLFAVMVSL 2580 Query: 254 IPSWRTSGFVEYIPSGHKQGDMVLVVPEGAYAVRLGNEASIAQRLR 391 WR G V GH QG++ V GA ++ G +A+R R Sbjct: 2581 ARLWRACGAVPSAVIGHSQGEIAAAVVAGALSLEDGMRV-VARRSR 2625
>ENO_THEVO (Q979Z9) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 401 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = -2 Query: 297 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHGSRSTS 118 D +Y+TNPD GI+ T V + G +K A+S + V+H S T+ Sbjct: 301 DDLYTTNPDRIRKGIELGSTNAVLIKVNQIGTLTKAQEAASLASSAGLKNVVSHRSGETT 360 Query: 117 PD-MADLAI 94 D +A L++ Sbjct: 361 DDFLAHLSV 369
>VLPE_MYCHR (Q49537) Variant surface antigen E precursor (VLPE prolipoprotein)| Length = 243 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/75 (30%), Positives = 35/75 (46%) Frame = -2 Query: 336 SGTTSTMSPCLCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPS 157 SG S+ S PDG +S NP PTT P+ + P + P S+PS + Sbjct: 81 SGNGSSNSSVSTPDGQHS-NPS--------NPTTSDPKESNPSNPTTSDPKESNPSNPTT 131 Query: 156 ANLQVAHGSRSTSPD 112 ++ Q ++ S T+ D Sbjct: 132 SDGQHSNPSNPTTSD 146
>NAS9_HORVU (Q9XFB7) Nicotianamine synthase 9 (EC 2.5.1.43)| (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S- adenosyl-methionine 3-amino-3-carboxypropyltransferase 9) Length = 340 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -2 Query: 174 PSVIPSANLQVAHGSRSTS---PDMADLAIFGPNVQETRTRLIR 52 PS+ PS + TS P D+ GP+ QE R RLIR Sbjct: 33 PSLSPSPEVNALFTELVTSCIPPSTVDVDALGPDAQEMRARLIR 76
>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein| pam/highwire/rpm-1) Length = 5233 Score = 28.9 bits (63), Expect = 3.1 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 12/88 (13%) Frame = -2 Query: 246 APTTCVPRSCDGCGPRSKLP-----------FASSPSVIPSANLQVAHGSRSTSPDMADL 100 AP SC+ RS+ P A S SV+ + L HG D+ L Sbjct: 4495 APALAASASCESTPERSRAPDTYCFEMLSMVLALSGSVVGRSYLSQQHGLLR---DLLGL 4551 Query: 99 AIFGPN-VQETRTRLIRRRAPDPVPESW 19 G + VQ T L+RR P+ PES+ Sbjct: 4552 LHTGSDRVQRQVTALLRRILPEITPESF 4579
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Frame = +2 Query: 14 NYHDSGTGSGALRL-------INLVRVSCTLGPKMARSAMSGLVLLLPCATCRLALGIT 169 NYHDS +G L L + ++R C G + A G+ L A R L +T Sbjct: 206 NYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHIDFRARDGMTALHKAACARHCLALT 264
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Frame = +2 Query: 14 NYHDSGTGSGALRL-------INLVRVSCTLGPKMARSAMSGLVLLLPCATCRLALGIT 169 NYHDS +G L L + ++R C G + A G+ L A R L +T Sbjct: 206 NYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHIDFRARDGMTALHKAACARHCLALT 264
>DNA2_SCHPO (Q9URU2) DNA replication ATP-dependent helicase dna2 (EC 3.6.1.-)| Length = 1398 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -2 Query: 306 LCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVI 163 L D ++ PD+ D IDD SCDGC P F+S +V+ Sbjct: 322 LALDKACNSLPDINSDFIDDWDD-----SCDGCTPGELCEFSSEYTVL 364
>COBQ_PSEAE (Q9I467) Cobyric acid synthase| Length = 490 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 204 PRSKLPFASSPSVIPSANLQVAHGSRSTSPDMADL 100 P+ +L F +PSA+L V GS+S D+A L Sbjct: 276 PQVELSFVGPGQALPSADLIVLPGSKSVRADLAAL 310
>ENO_THEAC (Q9HJT1) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 401 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = -2 Query: 297 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHGSRSTS 118 D +Y+TNPD G++ T V + G S A + + V+H S T+ Sbjct: 301 DDLYTTNPDRIRKGVEKKSTNAVLIKVNQIGTLSAAREAVAVATFAGMKNIVSHRSGETT 360 Query: 117 PD-MADLAI-FGPNVQET 70 D +A L++ FG +T Sbjct: 361 DDFLAHLSVAFGSTFVKT 378
>COBQ_NOCFA (Q5YSA4) Cobyric acid synthase| Length = 520 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 210 CGPRSKLPFASSPSVIPSANLQVAHGSRSTSPDMA 106 C P + + S PS + A+L V GS+ST D+A Sbjct: 279 CEPGVAVRWVSEPSRLADADLVVVPGSKSTVSDLA 313
>TAR1_KLULA (Q6CQE5) Protein TAR1| Length = 109 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = -2 Query: 288 YSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQV 142 ++ N D RH G + T+C GP +KLP ++ S + A Q+ Sbjct: 63 FTNNWDPRHTGFSPSMTSCSKEHRQ--GPATKLPSSNYNSDVEDARFQI 109
>HIPK3_HUMAN (Q9H422) Homeodomain-interacting protein kinase 3 (EC 2.7.11.1)| (Homolog of protein kinase YAK1) (Fas-interacting serine/threonine-protein kinase) (FIST) (Androgen receptor-interacting nuclear protein kinase) (ANPK) Length = 1215 Score = 28.1 bits (61), Expect = 5.3 Identities = 24/74 (32%), Positives = 32/74 (43%) Frame = -2 Query: 387 RRCAMDASLPRRTA*APSGTTSTMSPCLCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGC 208 R C++ S P T S S+ SPC P+ M + D +D +PT+ D Sbjct: 907 RMCSL--SSPDSTLSTSSSGQSSPSPCKRPNSMSDEEQESSCDTVDGSPTS------DSS 958 Query: 207 GPRSKLPFASSPSV 166 G S PFA S V Sbjct: 959 GHDS--PFAESTFV 970
>SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)| Length = 1137 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = -2 Query: 336 SGTTSTMSPCLCPD--GMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVI 163 S + + +SP + P +YS +G +P+ +P S D P S+ P +S+PS + Sbjct: 960 SSSKAELSPSMAPQETSLYSL-----FEGTPWSPS--LPASSDHSTPASQSPHSSNPSSL 1012 Query: 162 PSANLQVAHGS 130 PS+ H S Sbjct: 1013 PSSPPTHNHNS 1023
>CRTX_ENTAG (Q01330) Zeaxanthin glucosyl transferase (EC 2.4.1.-)| Length = 413 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/46 (30%), Positives = 18/46 (39%) Frame = -2 Query: 249 DAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHGSRSTSPD 112 D T S CG + F P + ANL + HG +T D Sbjct: 278 DGLTPAQADSLYACGATEVVSFVDQPRYVAEANLVITHGGLNTVLD 323
>UNC52_CAEEL (Q06561) Basement membrane proteoglycan precursor (Perlecan| homolog) (Uncoordinated protein 52) Length = 3375 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 7/60 (11%) Frame = -2 Query: 339 PSGTTSTMSPCLCPDGMYSTN-----PDVRHDGIDDAPTTCVP--RSCDGCGPRSKLPFA 181 P G + C+CP G T+ P G TCVP CGP + P A Sbjct: 624 PDGLALEVEQCVCPPGYLGTSCEDCAPGYERSGYGPYLGTCVPIQPRHQQCGPGAVAPTA 683
>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Frame = +3 Query: 78 VHWGQRWQ-GQPCPG*CSCFH 137 V W Q WQ PCPG C C++ Sbjct: 15 VLWLQAWQVAAPCPGACVCYN 35
>IL3B2_MOUSE (P26954) Interleukin-3 receptor class 2 beta chain precursor| (Interleukin-3 receptor class II beta chain) (Colony-stimulating factor 2 receptor, beta 2 chain) Length = 878 Score = 27.3 bits (59), Expect = 9.1 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Frame = -2 Query: 360 PRRTA*APS-GTTSTMSPCLC------PDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGP 202 P T+ PS G S SP LC P G + P D ++ P+ + P Sbjct: 724 PLSTSLGPSLGLPSAQSPSLCLKLPRVPSGSPALGPPGFEDYVELPPSVSQAATSPPGHP 783 Query: 201 RSKLPFASSPSVIP 160 P ASSP+VIP Sbjct: 784 AP--PVASSPTVIP 795
>ERYA3_SACER (Q03133) Erythronolide synthase, modules 5 and 6 (EC 2.3.1.94) (ORF| 3) (6-deoxyerythronolide B synthase III) (DEBS 3) Length = 3171 Score = 27.3 bits (59), Expect = 9.1 Identities = 25/96 (26%), Positives = 32/96 (33%), Gaps = 7/96 (7%) Frame = +2 Query: 95 MARSAMSGLVLLLPCATCRLALGITDGLLANGNFERGPQPSQLRGTQVVG-------ASS 253 MAR +S V A C L G A+ E+ P L VV S Sbjct: 2034 MARGLLSVPVFAESIAECDAVLSEVAGFSASEVLEQRPDAPSLERVDVVQPVLFSVMVSL 2093 Query: 254 IPSWRTSGFVEYIPSGHKQGDMVLVVPEGAYAVRLG 361 W G GH QG++ V G ++ G Sbjct: 2094 ARLWGACGVSPSAVIGHSQGEIAAAVVAGVLSLEDG 2129
>ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G)| Length = 4377 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/47 (29%), Positives = 19/47 (40%) Frame = -2 Query: 240 TTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHGSRSTSPDMADL 100 T P+S + GP+ P VI +V H RS P D+ Sbjct: 2137 TPSAPQSAETTGPKPLFHEVPIPPVITETRTEVVHVIRSYDPSAGDV 2183
>QID3_TRIHA (P52755) Cell wall protein qid3 precursor| Length = 143 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = -2 Query: 336 SGTTSTMSPCLCPDGMYSTNPDVRHDGIDDAPTTC-VPRSCDGCGP 202 +G T+T LCP G+YS D + A C VP + GP Sbjct: 63 NGNTNTGGSALCPAGLYSNPQSCATDVLGLADLDCAVPSTTPHDGP 108
>PDE3A_RAT (Q62865) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A) (CGI-PDE A) Length = 1141 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 9/50 (18%) Frame = -3 Query: 146 RSHMEAGALAR---TWLT------LPSLAPMYKKRGRD*SDEEHRTPSPS 24 R + G L R TW T LP+L P +R R S + H PSPS Sbjct: 423 RRSLPPGLLRRVSSTWTTTTSATGLPTLEPAPVRRDRSASIKPHEAPSPS 472
>PDE3A_MOUSE (Q9Z0X4) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A) (CGI-PDE A) Length = 1141 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 9/50 (18%) Frame = -3 Query: 146 RSHMEAGALAR---TWLT------LPSLAPMYKKRGRD*SDEEHRTPSPS 24 R + G L R TW T LP+L P +R R S + H PSPS Sbjct: 423 RRSLPPGLLRRVSSTWTTTTSATGLPTLEPAPVRRDRSASIKPHEAPSPS 472
>CYAA_PODAN (Q01513) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 2145 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = -2 Query: 291 MYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHGSRSTSP 115 M ++ D I P +P S S PFA+S + +A+ +HGSR +P Sbjct: 13 MTGSSTDSARSNITVKPLPSLPPSAS-----SSSPFAASSNQTSNASRSASHGSRRAAP 66
>EFG2_HUMAN (Q969S9) Elongation factor G 2, mitochondrial precursor (mEF-G 2)| (Elongation factor G2) Length = 779 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/60 (33%), Positives = 28/60 (46%) Frame = -2 Query: 240 TTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHGSRSTSPDMADLAIFGPNVQETRTR 61 TT + C ++ L A + P NL+V SP +ADLA N+QE +TR Sbjct: 663 TTMISACVSRCVQKA-LKKADKQVLEPLMNLEVTVARDYLSPVLADLAQRRGNIQEIQTR 721
>SLIK1_MOUSE (Q810C1) SLIT and NTRK-like protein 1 precursor| Length = 696 Score = 27.3 bits (59), Expect = 9.1 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = +3 Query: 102 GQPCPG*CSCFHV 140 G PCPG CSC H+ Sbjct: 338 GLPCPGGCSCDHI 350
>NTRB_AZOBR (P45670) Nitrogen regulation protein ntrB (EC 2.7.13.3)| Length = 400 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -2 Query: 384 RCAMDASLPRRTA*--APSGTTSTMSPCLCPDGMYSTNPD 271 R + A LPRR A APS + + PC+ P M + PD Sbjct: 3 RASAAAPLPRRPARPRAPSSSYRPVRPCIDPSVMLNALPD 42
>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%) Frame = -2 Query: 339 PSGTTSTMSPCLCPDGMYSTNPDVRHDGI--DDAPTTC 232 PSG T C+CP+G Y N D + D TC Sbjct: 4189 PSGAT-----CICPEGKYMMNGTCHDDSLLDDSCKLTC 4221
>IGW2_HETFR (P83743) IgW chain C region, secreted form 2 (Fragment)| Length = 133 Score = 27.3 bits (59), Expect = 9.1 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -2 Query: 249 DAPTTCVPRSCDGCGPR 199 + P TC P SC GC P+ Sbjct: 88 NTPCTCPPSSCSGCMPK 104
>IL3RB_MOUSE (P26955) Cytokine receptor common beta chain precursor| (GM-CSF/IL-3/IL-5 receptor common beta-chain) (CD131 antigen) Length = 896 Score = 27.3 bits (59), Expect = 9.1 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Frame = -2 Query: 360 PRRTA*APS-GTTSTMSPCLC------PDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGP 202 P T+ PS G S SP LC P G + P D ++ P+ V ++ Sbjct: 724 PLSTSLGPSLGLPSAQSPSLCLKLPRVPSGSPALGPPGFEDYVELPPS--VSQAAKSPPG 781 Query: 201 RSKLPFASSPSVIP 160 P ASSP+VIP Sbjct: 782 HPAPPVASSPTVIP 795
>COBQ_MYCTU (P0A532) Cobyric acid synthase| Length = 494 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -2 Query: 213 GCGPRSKLPFASSPSVIPSANLQVAHGSRSTSPDMA 106 G P + FAS P + A+L V G+R+T D+A Sbjct: 274 GLEPDLDVVFASDPRALDDADLIVLPGTRATIADLA 309
>COBQ_MYCBO (P0A533) Cobyric acid synthase| Length = 494 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -2 Query: 213 GCGPRSKLPFASSPSVIPSANLQVAHGSRSTSPDMA 106 G P + FAS P + A+L V G+R+T D+A Sbjct: 274 GLEPDLDVVFASDPRALDDADLIVLPGTRATIADLA 309
>CARB_ZYMMO (O50236) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1112 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = -2 Query: 123 TSPDMADLAIFGPNVQETRTRLIRRRAPD 37 T PDMAD P E R+I + PD Sbjct: 56 TDPDMADATYIEPITPEVVARIIEKERPD 84
>LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin| heavy chain) Length = 3110 Score = 27.3 bits (59), Expect = 9.1 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%) Frame = -2 Query: 372 DASLPRRTA*APSGTTSTMSPCLCPDGMYSTNPDVRHDGIDDAPTTCVPRS----CDGC- 208 D LP GT+ PC CP + S N +PT + RS CDGC Sbjct: 786 DKCLPGFYGEPTKGTSEDCQPCACPLNIPSNN---------FSPTCHLDRSLGLICDGCP 836 Query: 207 ----GPR 199 GPR Sbjct: 837 VGYTGPR 843
>CARB_HAEDU (Q7VP67) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1075 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -2 Query: 123 TSPDMADLAIFGPNVQETRTRLIRRRAPDPV 31 T PDMAD+ P +T ++I + PD + Sbjct: 56 TDPDMADVTYIEPIQWQTLEKIIEKERPDAI 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,679,787 Number of Sequences: 219361 Number of extensions: 1013524 Number of successful extensions: 3632 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 3491 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3626 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
