ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast43e07 |
|---|---|
| Clone Library Name | barley_pub |
>PHAR3_MOUSE (Q8BYK5) Phosphatase and actin regulator 3 (Scapinin)| (Scaffold-associated PP1-inhibiting protein) Length = 558 Score = 33.1 bits (74), Expect = 0.16 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = -3 Query: 391 PTPSPDPAGQQEA--DEGGQPGPPDAAGSQIWSPD 293 P S PAG+QE EG QPG P A+G+ S D Sbjct: 133 PVQSEPPAGEQETLTSEGAQPGSPSASGTDQVSQD 167
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2157 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPGPPTPSTLSPAVGANPRAVARGGA 129 PPAS P PA PP ST +P V A P V+ GG+ Sbjct: 535 PPASAPTPEKEPEE-PAQAPPAQSTPTPGVAAAPTLVSGGGS 575
>HXD11_MOUSE (P23813) Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5)| Length = 323 Score = 32.0 bits (71), Expect = 0.37 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -3 Query: 388 TPSPDPAGQQEADEGGQPGPPDAAGSQIWSPDVAP 284 TP P+P G E G GPP AG++ VAP Sbjct: 214 TPGPEPKGAAEGGGGEGEGPPGEAGAEKSGGTVAP 248
>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082| Length = 721 Score = 31.6 bits (70), Expect = 0.48 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPGPPTPSTLSPAVGANPRAVARGG 126 P A P G P PGPP P T+SP + + AV GG Sbjct: 251 PTAPTPTSPFGTAPMP-PGPPPPGTVSPPLPPSAPAVGVGG 290
>HXD11_HUMAN (P31277) Homeobox protein Hox-D11 (Hox-4F)| Length = 338 Score = 31.2 bits (69), Expect = 0.63 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -3 Query: 388 TPSPDPAGQQEADEGGQPGPPDAAGSQIWSPDVAP 284 TP +P G E G GPP AG++ S VAP Sbjct: 229 TPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAP 263
>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)| Length = 777 Score = 28.1 bits (61), Expect(2) = 1.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 189 GVSA*AGWPAPTATYGREEEGPSTSHRA 106 G A A P P A +GR+EE PS + A Sbjct: 184 GAHAAAAAPHPAAAHGRDEEAPSAAKSA 211 Score = 20.8 bits (42), Expect(2) = 1.1 Identities = 8/17 (47%), Positives = 9/17 (52%) Frame = -2 Query: 302 VAGRRPETQPPRLGPLP 252 +AG RP PP P P Sbjct: 133 IAGARPVAPPPAPPPAP 149
>COAT_PVSP (P16653) Coat protein (Capsid protein) (CP)| Length = 293 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -3 Query: 385 PSPDPAGQQEADEGGQPGPPDAAGSQIWSPDVAP 284 P PDP+ EA + QP PP A +++ P Sbjct: 3 PKPDPSSSGEAPQAMQPAPPPRAEGHMYAQPEGP 36
>SORC1_MOUSE (Q9JLC4) VPS10 domain-containing receptor SorCS1 precursor (mSorCS)| Length = 1167 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = +1 Query: 7 PASLPRRRLGQRRFPAPGP--PTPSTLSPAVGANPRAVARG 123 P+S PRR L R FP PGP P+T P AVA G Sbjct: 43 PSSTPRRTLTPRGFPHPGPLGRAPATPPPLFMRPLFAVAPG 83
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)| Length = 851 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +1 Query: 37 QRRFPAPGPPTPSTLSPAVGANPRAVARGGA 129 QRR PA P P + PA G P A GGA Sbjct: 782 QRRAPAVPPARPGSRGPAPGPPPAGSALGGA 812
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)| Length = 867 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +1 Query: 37 QRRFPAPGPPTPSTLSPAVGANPRAVARGGA 129 QRR PA P P + PA G P A GGA Sbjct: 782 QRRAPAVPPARPGSRGPAPGPPPAGSALGGA 812
>FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 481 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/50 (32%), Positives = 18/50 (36%) Frame = -3 Query: 391 PTPSPDPAGQQEADEGGQPGPPDAAGSQIWSPDVAPXXXXXXXXRCLDAA 242 P P P P QQ+ P PP A G+ D P LD A Sbjct: 62 PQPPPPPPQQQQQQPPPAPQPPQARGAPAADDDKGPQPLLLPPSTALDGA 111
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +1 Query: 37 QRRFPAPGPPTPSTLSPAVGANPRAVARGGA 129 QRR PA P P + PA G P A GGA Sbjct: 782 QRRAPAVPPARPGSRGPAPGPPPAGSALGGA 812
>CD5R2_MOUSE (O35926) Cyclin-dependent kinase 5 activator 2 precursor (CDK5| activator 2) (Cyclin-dependent kinase 5 regulatory subunit 2) (P39) (P39I) Length = 369 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +1 Query: 10 ASLPRRRLGQRRFPAPGPPTPSTLSPAVGANPRAV 114 A+ P G + P P PP P PA G++PR V Sbjct: 143 AAAPPPGSGGGKPPPPPPPAPQAAPPAPGSSPRRV 177
>DOC2B_MOUSE (P70169) Double C2-like domain-containing protein beta (Doc2-beta)| Length = 412 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 1 MPPASLPRRRLGQRRFPAPGPPTPSTLSPAVGANPRAVARG 123 +PP + PR AP PP SPA A+PR+ + G Sbjct: 44 LPPTAAPR---------APAPPDAPARSPAASASPRSPSDG 75
>BLAC_NOCLA (Q06316) Beta-lactamase precursor (EC 3.5.2.6) (Penicillinase)| Length = 302 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 49 PAPGPPTPSTLSPAVGANPRA 111 P P PPTPS +P+V P A Sbjct: 18 PEPAPPTPSAAAPSVAPGPAA 38
>Y344_MYCPN (P75434) Hypothetical UPF0134 protein MPN344 (H91_orf216)| Length = 216 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -3 Query: 391 PTPSPDPAGQQEADEGGQPGPPDAAGS 311 P P P G + +E GQPG PD S Sbjct: 69 PKPPKPPKGPDQPEEPGQPGGPDDPNS 95
>TNFL6_MACNE (P63306) Tumor necrosis factor ligand superfamily member 6 (Fas| antigen ligand) (Fas ligand) (CD178 antigen) (CD95L protein) [Contains: Tumor necrosis factor ligand superfamily member 6, membrane form; Tumor necrosis factor ligand superfamily Length = 280 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = +1 Query: 7 PASLPRRRLGQRRFPAPGPPTP 72 P S+PRR GQRR P P PP P Sbjct: 33 PTSVPRRP-GQRRPPPPPPPPP 53
>TNFL6_MACMU (P63307) Tumor necrosis factor ligand superfamily member 6 (Fas| antigen ligand) (Fas ligand) (CD178 antigen) (CD95L protein) [Contains: Tumor necrosis factor ligand superfamily member 6, membrane form; Tumor necrosis factor ligand superfamily Length = 280 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = +1 Query: 7 PASLPRRRLGQRRFPAPGPPTP 72 P S+PRR GQRR P P PP P Sbjct: 33 PTSVPRRP-GQRRPPPPPPPPP 53
>TNFL6_MACFA (P63308) Tumor necrosis factor ligand superfamily member 6 (Fas| antigen ligand) (Fas ligand) (CD178 antigen) (CD95L protein) [Contains: Tumor necrosis factor ligand superfamily member 6, membrane form; Tumor necrosis factor ligand superfamily Length = 280 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = +1 Query: 7 PASLPRRRLGQRRFPAPGPPTP 72 P S+PRR GQRR P P PP P Sbjct: 33 PTSVPRRP-GQRRPPPPPPPPP 53
>TNFL6_CERTO (Q9BDN1) Tumor necrosis factor ligand superfamily member 6 (Fas| antigen ligand) (Fas ligand) (CD178 antigen) (Protein CD95L) [Contains: Tumor necrosis factor ligand superfamily member 6, membrane form; Tumor necrosis factor ligand superfamily Length = 280 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = +1 Query: 7 PASLPRRRLGQRRFPAPGPPTP 72 P S+PRR GQRR P P PP P Sbjct: 33 PTSVPRRP-GQRRPPPPPPPPP 53
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +1 Query: 19 PRRR-LGQRRFPAPGPPTPSTLSPAVGANPRAVARGGA 129 PRRR + R P+P P + + A GA R A GGA Sbjct: 43 PRRRSIRLRPLPSPSPSPSAAAAAAGGAESRGAALGGA 80
>TNFL6_HUMAN (P48023) Tumor necrosis factor ligand superfamily member 6 (Fas| antigen ligand) (Fas ligand) (CD178 antigen) (CD95L protein) (Apoptosis antigen ligand) (APTL) [Contains: Tumor necrosis factor ligand superfamily member 6, membrane form; Tumor Length = 281 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = +1 Query: 7 PASLPRRRLGQRRFPAPGPPTP 72 P S+PRR GQRR P P PP P Sbjct: 33 PTSVPRRP-GQRRPPPPPPPPP 53
>DMRT1_MOUSE (Q9QZ59) Doublesex- and mab-3-related transcription factor 1| Length = 374 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -2 Query: 128 APPRATARGFAPTAGERVEGVGGPGAG 48 APP+ A G++ AG GG GAG Sbjct: 22 APPKGKAGGYSKAAGAMAGAAGGSGAG 48
>DYR1B_MOUSE (Q9Z188) Dual specificity tyrosine-phosphorylation-regulated kinase| 1B (EC 2.7.12.1) Length = 589 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPGPPTPSTLSPAVG 96 P AS R R+ R P P P P+TL P +G Sbjct: 547 PAASALRTRMTGGRPPLPPPDDPATLGPRLG 577
>FBXL6_HUMAN (Q8N531) F-box/LRR-repeat protein 6 (F-box and leucine-rich repeat| protein 6) (F-box protein FBL6) (FBL6A) Length = 539 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/42 (33%), Positives = 17/42 (40%) Frame = -2 Query: 131 KAPPRATARGFAPTAGERVEGVGGPGAGKRRCPSRLRGSDAG 6 + PPR + P AG R E P P+ G DAG Sbjct: 69 RQPPRGPSAAAKPKAGLRSEAAAAPAPAPAPTPTPEEGPDAG 110
>TAOK2_HUMAN (Q9UL54) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand| and one amino acid protein 2) (Prostate-derived STE20-like kinase 1) (PSK-1) (Kinase from chicken homolog C) (hKFC-C) Length = 1235 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -3 Query: 391 PTPSPDPAGQQEADEGGQPGPPDAAGSQIWSPDVAP 284 P +P P ++E +EG G P G SPD+ P Sbjct: 893 PALTPVPEEEEEEEEGAPIGTPRDPGDGCPSPDIPP 928
>NEST_HUMAN (P48681) Nestin| Length = 1618 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 4/39 (10%) Frame = +1 Query: 7 PASLPRRRLGQRRFPA----PGPPTPSTLSPAVGANPRA 111 PA L + Q R P P PPTP SPAV A RA Sbjct: 368 PAFLKNQEFLQARTPTLASTPIPPTPQAPSPAVDAEIRA 406
>DYR1B_HUMAN (Q9Y463) Dual specificity tyrosine-phosphorylation-regulated kinase| 1B (EC 2.7.12.1) (Mirk protein kinase) (Minibrain-related kinase) Length = 629 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPGPPTPSTLSPAVG 96 P AS R R+ R P P P P+TL P +G Sbjct: 587 PAASALRTRMTGGRPPLPPPDDPATLGPHLG 617
>CH60_BIFAD (Q9REU4) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat| shock protein 60) Length = 582 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 6/33 (18%) Frame = +1 Query: 4 PPASLP------RRRLGQRRFPAPGPPTPSTLS 84 PPA+ P RR G RRFPAP T + L+ Sbjct: 525 PPAAAPAAVFPLRRNAGTRRFPAPSSTTRAWLT 557
>TRIM9_MOUSE (Q8C7M3) Tripartite motif protein 9| Length = 817 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 34 GQRRFPAPGPPTPSTLSPAVGANPR 108 G R FP PP P+ LSPA+ PR Sbjct: 98 GVRVFPPAMPPPPTHLSPALAPVPR 122
>TNFL6_PIG (Q9BEA8) Tumor necrosis factor ligand superfamily member 6 (Fas| antigen ligand) (Fas ligand) (CD178 antigen) (CD95L protein) [Contains: Tumor necrosis factor ligand superfamily member 6, membrane form; Tumor necrosis factor ligand superfamily m Length = 282 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Frame = +1 Query: 7 PASLPRRRLGQRRFP--APGPPTPSTLSPA 90 PAS+P R GQRR P P PP P TL P+ Sbjct: 33 PASVPGRP-GQRRPPPPPPPPPPPPTLLPS 61
>PALA_NEUCR (Q7S532) pH-response regulator protein palA/rim-20| Length = 886 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = -3 Query: 382 SPDPAGQQEADEGGQPGPPDAAGSQIWSP 296 SP GQQ E GQPGP +A W P Sbjct: 855 SPVAQGQQHQQEQGQPGPVNAT----WDP 879
>Y064_MYCTU (O53609) UPF0182 protein Rv0064/MT0070| Length = 979 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -2 Query: 104 GFAPTAGERVEGVGGPGAGKRRCPSRLRGSDA 9 G+APT E ++ V GPG G+ + RG DA Sbjct: 882 GYAPTLAESLDQVFGPGTGR---VATARGGDA 910
>VASP_HUMAN (P50552) Vasodilator-stimulated phosphoprotein (VASP)| Length = 379 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Frame = +1 Query: 1 MPPASLPRRRLGQRRFPAPGPPTPSTLSP---AVGANPRAVARGGA 129 +PP+ +P G P P PP P+ P GA A A GA Sbjct: 187 LPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLAAAIAGA 232
>TRIM9_RAT (Q91ZY8) Tripartite motif protein 9 (SNAP-25-interacting RING| finger protein) Length = 710 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 34 GQRRFPAPGPPTPSTLSPAVGANPR 108 G R FP PP P+ LSPA+ PR Sbjct: 98 GVRVFPPAMPPPPTHLSPALAPVPR 122
>GP150_HUMAN (Q8NGU9) Probable G-protein coupled receptor 150| Length = 434 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +1 Query: 1 MPPASLPRRRLGQRRFPAPGPPTPSTLSPAVGANPRAVARGG 126 +PPA + R G P P PP P++L P GA P A A G Sbjct: 177 LPPAFVVR---GDSPSPLPPPPPPTSLQP--GAPPAARAWPG 213
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 10 ASLPRRRLGQRRFPAPGPPTPSTLSPAVGANPRAVA 117 A+LP + + P P PP PS SP GA P + A Sbjct: 15 ANLPNGYMTDLQRPQPPPPPPSAASP--GATPGSAA 48
>MUTS_BORBR (Q7WLT5) DNA mismatch repair protein mutS| Length = 876 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 387 PPRQIRQASRRPTRVASQGHPTP 319 P IRQASR R+ +QG PTP Sbjct: 794 PAAVIRQASRELERLEAQGAPTP 816
>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 475 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPG--PPTPSTLSPAVGANPRA 111 PPA + PAPG PPTP PA G +P A Sbjct: 300 PPAPVVHPPTSGVHPPAPGVHPPTPGVHPPAPGVHPPA 337
>RP3A_HUMAN (Q9Y2J0) Rabphilin-3A (Exophilin-1)| Length = 694 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -3 Query: 388 TPSPDPAGQQEADEGGQPGPPDAAGSQIWSPDVAP 284 +P+P GQ G +PGP A P+VAP Sbjct: 285 SPAPPQPGQPGTPGGSRPGPGPAGRFPDQKPEVAP 319
>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) (Fragment) Length = 1499 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPGPPTP-STLSPAVGANPR 108 PP +LP G FP+PGPP P TL+ +PR Sbjct: 887 PPDTLPPHS-GALPFPSPGPPHPHPTLAYGPAPSPR 921
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = -3 Query: 391 PTPSPDPAGQQ-EADEGGQPGPPDAAG 314 P P PAGQ + EGG PG P AG Sbjct: 765 PIGPPGPAGQPGDKGEGGSPGLPGIAG 791
>GCFC_HUMAN (Q9Y5B6) GC-rich sequence DNA-binding factor homolog| Length = 917 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 13/55 (23%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPA-------------PGPPTPSTLSPAVGANPRAVARGGA 129 PP LP G+ P PGP PS L+P +GA GGA Sbjct: 29 PPPLLPPPGTGEEAGPGGGDRAPGGESLLGPGPSPPSALTPGLGAEAGGGFPGGA 83
>PNRC1_HUMAN (Q12796) Proline-rich nuclear receptor coactivator 1 (Proline-rich| protein 2) (B4-2 protein) Length = 327 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Frame = -3 Query: 388 TPSPDPAGQQEADEGGQ---PGPPDAAGSQIWSPDVAP 284 +P+ P+G QE P P AAG++ SPD+AP Sbjct: 129 SPATGPSGAQEVPGPAAALAPSPAAAAGTEGASPDLAP 166
>MUTS_BORPE (Q7VY01) DNA mismatch repair protein mutS| Length = 883 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 387 PPRQIRQASRRPTRVASQGHPTP 319 P IRQASR R+ +QG PTP Sbjct: 801 PAAVIRQASRELERLEAQGAPTP 823
>MUTS_BORPA (Q7W880) DNA mismatch repair protein mutS| Length = 883 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 387 PPRQIRQASRRPTRVASQGHPTP 319 P IRQASR R+ +QG PTP Sbjct: 801 PAAVIRQASRELERLEAQGAPTP 823
>MAZ_MOUSE (P56671) Myc-associated zinc finger protein (MAZI) (Purine-binding| transcription factor) (Pur-1) Length = 477 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 49 PAPGPPTPSTLSPAVGANPRAVA 117 PAP PP P+ +PA A P A A Sbjct: 131 PAPPPPPPAVSAPAAEAAPPAAA 153
>MAZ_MESAU (P56670) Myc-associated zinc finger protein (MAZI) (Purine-binding| transcription factor) (Pur-1) (Fragment) Length = 331 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 49 PAPGPPTPSTLSPAVGANPRAVA 117 PAP PP P+ +PA A P A A Sbjct: 118 PAPPPPPPAVSAPAAEAAPPAAA 140
>LYTS_STAES (Q8CR79) Sensor protein lytS (EC 2.7.13.3) (Autolysin sensor| kinase) Length = 591 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Frame = +2 Query: 317 GGVGWPWLATLVGLLLA-CRIWRGG 388 G +G PW+A +VG++ CR++ GG Sbjct: 94 GLIGGPWVAIIVGIISGLCRLYIGG 118
>LYTS_STAEQ (Q5HLG3) Sensor protein lytS (EC 2.7.13.3) (Autolysin sensor| kinase) Length = 591 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Frame = +2 Query: 317 GGVGWPWLATLVGLLLA-CRIWRGG 388 G +G PW+A +VG++ CR++ GG Sbjct: 94 GLIGGPWVAIIVGIISGLCRLYIGG 118
>HIC1_MOUSE (Q9R1Y5) Hypermethylated in cancer 1 protein (Hic-1)| Length = 892 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPGPPTPSTLSPAVGANP 105 P +S+P R L +R P P P +P PAV P Sbjct: 409 PGSSVPERPLSERELP-PRPDSPPGAGPAVYKEP 441
>FAS2_PENPA (P15368) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1857 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = -3 Query: 391 PTPSPDPAGQQEADEGGQPGPPDAAG 314 P PS PA A G P PP +AG Sbjct: 104 PAPSATPAAPAAAPAAGAPPPPPSAG 129
>CHSS1_MOUSE (Q6ZQ11) Chondroitin sulfate synthase 1 (EC 2.4.1.175)| (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase) (Chondroitin sulfate synthase 1) (N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransf Length = 800 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%) Frame = -3 Query: 391 PTPSPDPAGQQEADEGGQPGPP--DAAGSQIW 302 P P P G + E QPG DA G+Q+W Sbjct: 39 PRRRPSPEGCRPGQEASQPGGARGDARGAQLW 70
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 7/33 (21%) Frame = -3 Query: 391 PTPSPDPAGQQ-------EADEGGQPGPPDAAG 314 P P PAGQ E + GQPGPP +G Sbjct: 1317 PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1349
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Frame = -3 Query: 391 PTPSPDPAG-QQEADEGGQPGPP 326 PTP P PAG + A GG PG P Sbjct: 3861 PTPGPGPAGVKAGARPGGTPGAP 3883
>ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)| (Unc-51-like kinase 1) Length = 1050 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 43 RFPAPGPPTPSTLSPAVGANPRAVARGGA 129 R P+P PP S+ SP+ A P + +R GA Sbjct: 400 RTPSPSPPCSSSPSPSGRAGPFSSSRCGA 428
>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)| Length = 443 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPG-PPTPSTLSPAVGAN 102 PPA P + Q P P PP PS++SP AN Sbjct: 100 PPAPQPPQPPPQPPAPTPAAPPPPSSVSPPQSAN 133
>BCB2_ARATH (O80517) Uclacyanin-2 precursor (Uclacyanin-II) (Blue| copper-binding protein II) (BCB II) (Phytocyanin 2) Length = 202 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPGPPTPSTLSPAVGA 99 PP+S P P+ G PTP+T +P G+ Sbjct: 137 PPSSTPGTPTTPESPPSGGSPTPTTPTPGAGS 168
>ANLN_DROME (Q9V4P1) Actin-binding protein anillin (Actin-binding protein 8)| (ABP8) Length = 1239 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPGPPTPSTLSPAVGANPR 108 PPA P R + R P P PP + LSP + ++ R Sbjct: 508 PPAPAPSRVV--RPMPPPPPPPIAALSPGLASSKR 540
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/41 (39%), Positives = 17/41 (41%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPGPPTPSTLSPAVGANPRAVARGG 126 PP S P R P P PP P P G + R RGG Sbjct: 272 PPPSPPPRP--PPPLPPPPPPPPPPQPPPAGGSARRRRRGG 310
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 4 PPASLPRRRLGQRRFPAPGPPT-PSTLSPA 90 PPASL + ++ Q AP PPT PST S A Sbjct: 473 PPASLGQSQIPQSAPSAPIPPTLPSTTSAA 502
>HNF4A_RAT (P22449) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)| (Transcription factor HNF-4) (Transcription factor 14) Length = 465 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -3 Query: 379 PDPAGQQEADEGGQPGPPDAAGSQ 308 P P GQ E QP PP +GS+ Sbjct: 412 PRPRGQAATPETPQPSPPSGSGSE 435
>HNF4A_MOUSE (P49698) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)| (Transcription factor HNF-4) (Transcription factor 14) Length = 465 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -3 Query: 379 PDPAGQQEADEGGQPGPPDAAGSQ 308 P P GQ E QP PP +GS+ Sbjct: 412 PRPRGQAATPETPQPSPPSGSGSE 435
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = -3 Query: 391 PTPSPDPAGQQ-EADEGGQPGPPDAAG 314 P P PAGQ + EGG PG P AG Sbjct: 766 PIGPPGPAGQPGDKGEGGAPGLPGIAG 792
>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein| dumpy-15) Length = 296 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -3 Query: 391 PTPSPDPAGQQEAD-EGGQPGPPDAAGS 311 P +P P G AD + G PGPP AG+ Sbjct: 244 PKGAPGPDGPPGADGQSGPPGPPGPAGT 271
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = -3 Query: 391 PTPSPDPAGQQ-EADEGGQPGPPDAAG 314 P P PAGQ + EGG PG P AG Sbjct: 765 PIGPPGPAGQPGDKGEGGAPGLPGIAG 791 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,496,976 Number of Sequences: 219361 Number of extensions: 747479 Number of successful extensions: 6611 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 4499 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6464 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
