ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast43e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
3dbj|AP004261.3| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
4ref|XM_550396.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
6dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
7dbj|AK108226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
8tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 44 0.38
9gb|M34651.1|SH1PROIE Pseudorabies virus with upstream and downst... 44 0.38
10ref|XM_480930.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
11gb|M87280.1|ERWCRTS Pantoea agglomerans pyrophosphate synthase (... 42 1.5
12gb|M38423.1|ERWCRTIB Pantoea agglomerans phytoene dehydrogenase ... 42 1.5
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AK120890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
17dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
18dbj|AK106413.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
19gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.9
20ref|NM_193019.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
21ref|XM_477178.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
22ref|XM_364614.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.9
23ref|XM_584085.2| PREDICTED: Bos taurus similar to Protein C2orf1... 40 5.9
24gb|AF007792.2| Bacteriophage Mu late morphogenetic region 40 5.9
25gb|AF352564.2| Pseudorabies virus immediate-early protein IE180 ... 40 5.9
26emb|AL133545.10| Human DNA sequence from clone RP11-386N14 on ch... 40 5.9
27emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
28gb|AF083977.1| Bacteriophage Mu, complete genome 40 5.9
29dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
32dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
34gb|AY860420.1| Cloning vector MuNXKan, complete sequence 40 5.9
35gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster 40 5.9
36gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete ... 40 5.9
37gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequ... 40 5.9
38dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
39dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
40dbj|AP005932.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
41dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
42dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
43dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
44dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
45dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
46emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306... 40 5.9
47emb|X15120.1|HEPVIE Pseudorabies virus immediate-early gene 40 5.9
48dbj|AK121642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
49dbj|AK119323.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
50dbj|AK101560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
51dbj|AK100889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
52dbj|AK073705.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
53dbj|AK064376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
54dbj|AK058914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
55dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
56gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
57emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.9
58emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 5.9
59dbj|AB208795.1| Homo sapiens mRNA for ubiquitously transcribed t... 40 5.9
60gb|M57505.1|SH1LLT Pseudorabies virus ORF1, ORF2, and ORF3 mRNA,... 40 5.9 
>dbj|AK070185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045K20, full
           insert sequence
          Length = 2495

 Score =  188 bits (95), Expect = 1e-44
 Identities = 135/147 (91%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                       
Query: 289 gaggaggcgtgcagaggatgtgggagggggacgtggtgattgattgcttggaggaccgcc 348
           ||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||| | |
Sbjct: 259 gaggaggggtgcagaggatgtgggaaggggacgtggtgctggattgcttggaggacaggc 318

                                                                       
Query: 349 gaatcgcgctcgaggccgcctgttgcccatgctataggtttggcaag-acatgcggagag 407
           ||||||||||||||||||| || ||||||||||| ||||| |||||| ||||||||||||
Sbjct: 319 gaatcgcgctcgaggccgcgtgctgcccatgctacaggttcggcaagaacatgcggagag 378

                                      
Query: 408 ccaatctcggatcttgcttccttcagg 434
           ||||||| |||||||||||||||||||
Sbjct: 379 ccaatcttggatcttgcttccttcagg 405



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 167 gatggcggtgctggacttcgacatgctctgcgcgtccgtcgccatgtcggcggagagg 224
           ||||||||||||||||||||||||||| ||||| || || ||  || |||||||||||
Sbjct: 134 gatggcggtgctggacttcgacatgctgtgcgcctcggtggcgctggcggcggagagg 191
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  109 bits (55), Expect = 8e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                            
Query: 289      gaggaggcgtgcagaggatgtgggagggggacgtggtgattgattgcttggaggaccgcc 348
                ||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||| | |
Sbjct: 22005866 gaggaggggtgcagaggatgtgggaaggggacgtggtgctggattgcttggaggacaggc 22005807

                                   
Query: 349      gaatcgcgctcgaggccgc 367
                |||||||||||||||||||
Sbjct: 22005806 gaatcgcgctcgaggccgc 22005788



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 60/64 (93%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                            
Query: 372      tgcccatgctataggtttggcaaga-catgcggagagccaatctcggatcttgcttcctt 430
                ||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 22005127 tgcccatgctacaggttcggcaagaacatgcggagagccaatcttggatcttgcttcctt 22005068

                    
Query: 431      cagg 434
                ||||
Sbjct: 22005067 cagg 22005064



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                          
Query: 167      gatggcggtgctggacttcgacatgctctgcgcgtccgtcgccatgtcggcggagagg 224
                ||||||||||||||||||||||||||| ||||| || || ||  || |||||||||||
Sbjct: 22005991 gatggcggtgctggacttcgacatgctgtgcgcctcggtggcgctggcggcggagagg 22005934



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 95       ggccgcggcggaggaggagg 114
                ||||||||||||||||||||
Sbjct: 25864822 ggccgcggcggaggaggagg 25864841



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 95      ggccgcggcggaggaggagg 114
               ||||||||||||||||||||
Sbjct: 7292426 ggccgcggcggaggaggagg 7292407
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>dbj|AP004261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0013G11
          Length = 151405

 Score =  109 bits (55), Expect = 8e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                         
Query: 289   gaggaggcgtgcagaggatgtgggagggggacgtggtgattgattgcttggaggaccgcc 348
             ||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||| | |
Sbjct: 97910 gaggaggggtgcagaggatgtgggaaggggacgtggtgctggattgcttggaggacaggc 97851

                                
Query: 349   gaatcgcgctcgaggccgc 367
             |||||||||||||||||||
Sbjct: 97850 gaatcgcgctcgaggccgc 97832



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 60/64 (93%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                         
Query: 372   tgcccatgctataggtttggcaaga-catgcggagagccaatctcggatcttgcttcctt 430
             ||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 97171 tgcccatgctacaggttcggcaagaacatgcggagagccaatcttggatcttgcttcctt 97112

                 
Query: 431   cagg 434
             ||||
Sbjct: 97111 cagg 97108



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 167   gatggcggtgctggacttcgacatgctctgcgcgtccgtcgccatgtcggcggagagg 224
             ||||||||||||||||||||||||||| ||||| || || ||  || |||||||||||
Sbjct: 98035 gatggcggtgctggacttcgacatgctgtgcgcctcggtggcgctggcggcggagagg 97978
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>ref|XM_550396.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1090

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 88  catccatggccgcggcggaggaggaggcgtcca 120
           |||||||||| |||||||||| |||||||||||
Sbjct: 319 catccatggcggcggcggaggcggaggcgtcca 287
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 88      catccatggccgcggcggaggaggaggcgtcca 120
               |||||||||| |||||||||| |||||||||||
Sbjct: 4215221 catccatggcggcggcggaggcggaggcgtcca 4215253



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 92       catggccgcggcggaggaggaggcg 116
                |||||| ||||||||||||||||||
Sbjct: 30662912 catggcggcggcggaggaggaggcg 30662888
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>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1174_D05
          Length = 128525

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 88    catccatggccgcggcggaggaggaggcgtcca 120
             |||||||||| |||||||||| |||||||||||
Sbjct: 53188 catccatggcggcggcggaggcggaggcgtcca 53220
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>dbj|AK108226.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F04, full
           insert sequence
          Length = 1089

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 88  catccatggccgcggcggaggaggaggcgtcca 120
           |||||||||| |||||||||| |||||||||||
Sbjct: 318 catccatggcggcggcggaggcggaggcgtcca 286
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 95     ggccgcggcggaggaggaggcg 116
              ||||||||||||||||||||||
Sbjct: 138410 ggccgcggcggaggaggaggcg 138389



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 95     ggccgcggcggaggaggaggcg 116
              ||||||||||||||||||||||
Sbjct: 106192 ggccgcggcggaggaggaggcg 106213
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>gb|M34651.1|SH1PROIE Pseudorabies virus with upstream and downsteam sequences
          Length = 15141

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 95   ggccgcggcggaggaggaggcg 116
            ||||||||||||||||||||||
Sbjct: 6834 ggccgcggcggaggaggaggcg 6813
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>ref|XM_480930.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1516

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 96  gccgcggcggaggaggaggcg 116
           |||||||||||||||||||||
Sbjct: 32  gccgcggcggaggaggaggcg 12
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>gb|M87280.1|ERWCRTS Pantoea agglomerans pyrophosphate synthase (crtE), zeaxanthin
            glucosyl transferase (crtX), and lycopene cyclase (crtY)
            genes, complete cds; phytoene dehydrogenase (crtI) gene,
            partial cds; phytoene synthase (crtB) and beta-carotene
            hydroxylase (crtZ) genes, complete cds; and unknown genes
          Length = 12753

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 95   ggccgcggcggaggaggaggc 115
            |||||||||||||||||||||
Sbjct: 9610 ggccgcggcggaggaggaggc 9630
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>gb|M38423.1|ERWCRTIB Pantoea agglomerans phytoene dehydrogenase (crtI) and prephytoene
            pyrophosphate synthase (crtB) genes, complete cds
          Length = 2415

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 95   ggccgcggcggaggaggaggc 115
            |||||||||||||||||||||
Sbjct: 1665 ggccgcggcggaggaggaggc 1685
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 96       gccgcggcggaggaggaggcg 116
                |||||||||||||||||||||
Sbjct: 19669255 gccgcggcggaggaggaggcg 19669275



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 96      gccgcggcggaggaggaggcg 116
               |||||||||||||||||||||
Sbjct: 8697487 gccgcggcggaggaggaggcg 8697467
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>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1060H01
          Length = 157987

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 92     catggccgcggcggaggaggaggcg 116
              |||||| ||||||||||||||||||
Sbjct: 105189 catggcggcggcggaggaggaggcg 105165
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>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0070J06
          Length = 142303

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 96    gccgcggcggaggaggaggcg 116
             |||||||||||||||||||||
Sbjct: 40466 gccgcggcggaggaggaggcg 40446
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>dbj|AK120890.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029G09, full
           insert sequence
          Length = 1575

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 96  gccgcggcggaggaggaggcg 116
           |||||||||||||||||||||
Sbjct: 134 gccgcggcggaggaggaggcg 114
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>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0042B03
          Length = 167669

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 96     gccgcggcggaggaggaggcg 116
              |||||||||||||||||||||
Sbjct: 144815 gccgcggcggaggaggaggcg 144835
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>dbj|AK106413.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A03, full
           insert sequence
          Length = 1516

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 96  gccgcggcggaggaggaggcg 116
           |||||||||||||||||||||
Sbjct: 32  gccgcggcggaggaggaggcg 12
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 193     tctgcgcgtccgtcgccatgtcgg 216
               ||||||||||| ||||||||||||
Sbjct: 3819290 tctgcgcgtccatcgccatgtcgg 3819267
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>ref|NM_193019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 741

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ggccgcggcggaggaggagg 114
           ||||||||||||||||||||
Sbjct: 18  ggccgcggcggaggaggagg 37
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>ref|XM_477178.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1326

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ggccgcggcggaggaggagg 114
           ||||||||||||||||||||
Sbjct: 160 ggccgcggcggaggaggagg 179
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>ref|XM_364614.1| Magnaporthe grisea 70-15 hypothetical protein (MG09459.4) partial
            mRNA
          Length = 1377

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 92   catggccgcggcggaggaggaggc 115
            |||| |||||||||||||||||||
Sbjct: 1149 catgtccgcggcggaggaggaggc 1172
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>ref|XM_584085.2| PREDICTED: Bos taurus similar to Protein C2orf17 homolog
           (LOC507475), mRNA
          Length = 3465

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 101 ggcggaggaggaggcgtccacggc 124
           |||||||||||||||| |||||||
Sbjct: 810 ggcggaggaggaggcggccacggc 833
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>gb|AF007792.2| Bacteriophage Mu late morphogenetic region
          Length = 4349

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 313  agggggacgtggtgattgat 332
            ||||||||||||||||||||
Sbjct: 3099 agggggacgtggtgattgat 3118
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>gb|AF352564.2| Pseudorabies virus immediate-early protein IE180 gene, complete cds
          Length = 6281

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   ggccgcggcggaggaggagg 114
            ||||||||||||||||||||
Sbjct: 2638 ggccgcggcggaggaggagg 2619
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>emb|AL133545.10| Human DNA sequence from clone RP11-386N14 on chromosome X Contains the
             DUSP21 gene for dual specificity phosphatase 21, the 5'
             end of the UTX gene for ubiquitously transcribed
             tetratricopeptide repeat gene X chromosome and 3 CpG
             islands, complete sequence
          Length = 140717

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    ccgcggcggaggaggaggcg 116
             ||||||||||||||||||||
Sbjct: 69780 ccgcggcggaggaggaggcg 69799
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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
              complete sequence
          Length = 185211

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ggccgcggcggaggaggagg 114
              ||||||||||||||||||||
Sbjct: 119787 ggccgcggcggaggaggagg 119768
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>gb|AF083977.1| Bacteriophage Mu, complete genome
          Length = 36717

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   agggggacgtggtgattgat 332
             ||||||||||||||||||||
Sbjct: 13398 agggggacgtggtgattgat 13417
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 95       ggccgcggcggaggaggagg 114
                ||||||||||||||||||||
Sbjct: 12294903 ggccgcggcggaggaggagg 12294884
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 98       cgcggcggaggaggaggcgt 117
                ||||||||||||||||||||
Sbjct: 25030031 cgcggcggaggaggaggcgt 25030050
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 95      ggccgcggcggaggaggagg 114
               ||||||||||||||||||||
Sbjct: 7246129 ggccgcggcggaggaggagg 7246110
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 96       gccgcggcggaggaggaggc 115
                ||||||||||||||||||||
Sbjct: 23688551 gccgcggcggaggaggaggc 23688570



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 96       gccgcggcggaggaggaggc 115
                ||||||||||||||||||||
Sbjct: 18399557 gccgcggcggaggaggaggc 18399538



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 101     ggcggaggaggaggcgtcca 120
               ||||||||||||||||||||
Sbjct: 2029517 ggcggaggaggaggcgtcca 2029498
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 95       ggccgcggcggaggaggagg 114
                ||||||||||||||||||||
Sbjct: 26499495 ggccgcggcggaggaggagg 26499476
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>gb|AY860420.1| Cloning vector MuNXKan, complete sequence
          Length = 37199

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   agggggacgtggtgattgat 332
             ||||||||||||||||||||
Sbjct: 13398 agggggacgtggtgattgat 13417
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>gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster
          Length = 152740

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    ccatggccgcggcggaggaggagg 114
             ||||||| ||||||||||||||||
Sbjct: 54277 ccatggcagcggcggaggaggagg 54300
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>gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete sequence
          Length = 171949

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 91     ccatggccgcggcggaggaggagg 114
              ||||||| ||||||||||||||||
Sbjct: 114083 ccatggcagcggcggaggaggagg 114106
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>gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequence
          Length = 208592

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 91     ccatggccgcggcggaggaggagg 114
              ||||||| ||||||||||||||||
Sbjct: 124123 ccatggcggcggcggaggaggagg 124146
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>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_B06
          Length = 131956

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ggccgcggcggaggaggagg 114
             ||||||||||||||||||||
Sbjct: 99411 ggccgcggcggaggaggagg 99392
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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   ggcggaggaggaggcgtcca 120
             ||||||||||||||||||||
Sbjct: 50379 ggcggaggaggaggcgtcca 50360
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>dbj|AP005932.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0597A07
          Length = 149682

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     gccgcggcggaggaggaggc 115
              ||||||||||||||||||||
Sbjct: 123717 gccgcggcggaggaggaggc 123698
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>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ggccgcggcggaggaggagg 114
             ||||||||||||||||||||
Sbjct: 41876 ggccgcggcggaggaggagg 41857
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>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0029C06
          Length = 156500

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gccgcggcggaggaggaggc 115
             ||||||||||||||||||||
Sbjct: 36627 gccgcggcggaggaggaggc 36646
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>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1381_H04
          Length = 130961

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ggccgcggcggaggaggagg 114
             ||||||||||||||||||||
Sbjct: 98234 ggccgcggcggaggaggagg 98215
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>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0086N05
          Length = 163670

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ggccgcggcggaggaggagg 114
             ||||||||||||||||||||
Sbjct: 19107 ggccgcggcggaggaggagg 19088
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>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0016A21
          Length = 144076

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ggccgcggcggaggaggagg 114
              ||||||||||||||||||||
Sbjct: 132910 ggccgcggcggaggaggagg 132891
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>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 121563

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     cgcggcggaggaggaggcgt 117
              ||||||||||||||||||||
Sbjct: 101448 cgcggcggaggaggaggcgt 101429
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>emb|X15120.1|HEPVIE Pseudorabies virus immediate-early gene
          Length = 5123

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   ggccgcggcggaggaggagg 114
            ||||||||||||||||||||
Sbjct: 1612 ggccgcggcggaggaggagg 1593
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>dbj|AK121642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055N21, full
           insert sequence
          Length = 2246

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  gccgcggcggaggaggaggc 115
           ||||||||||||||||||||
Sbjct: 100 gccgcggcggaggaggaggc 81
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>dbj|AK119323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-A07, full
           insert sequence
          Length = 3743

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  ggccgcggcggaggaggagg 114
           ||||||||||||||||||||
Sbjct: 38  ggccgcggcggaggaggagg 19
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>dbj|AK101560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050D01, full
           insert sequence
          Length = 1750

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ggccgcggcggaggaggagg 114
           ||||||||||||||||||||
Sbjct: 238 ggccgcggcggaggaggagg 257
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>dbj|AK100889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023129A05, full
           insert sequence
          Length = 3455

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ggccgcggcggaggaggagg 114
           ||||||||||||||||||||
Sbjct: 119 ggccgcggcggaggaggagg 138
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>dbj|AK073705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058M24, full
           insert sequence
          Length = 2221

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 101 ggcggaggaggaggcgtcca 120
           ||||||||||||||||||||
Sbjct: 57  ggcggaggaggaggcgtcca 38
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>dbj|AK064376.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-D07, full
           insert sequence
          Length = 1727

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  ggccgcggcggaggaggagg 114
           ||||||||||||||||||||
Sbjct: 70  ggccgcggcggaggaggagg 51
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>dbj|AK058914.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-A02, full
           insert sequence
          Length = 1050

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 101 ggcggaggaggaggcgtcca 120
           ||||||||||||||||||||
Sbjct: 44  ggcggaggaggaggcgtcca 25
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>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1339_F05
          Length = 132708

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ggccgcggcggaggaggagg 114
             ||||||||||||||||||||
Sbjct: 35270 ggccgcggcggaggaggagg 35289
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 98       cgcggcggaggaggaggcgt 117
                ||||||||||||||||||||
Sbjct: 24958237 cgcggcggaggaggaggcgt 24958256
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>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146686

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    cgcggcggaggaggaggcgt 117
             ||||||||||||||||||||
Sbjct: 77136 cgcggcggaggaggaggcgt 77117
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ggccgcggcggaggaggagg 114
              ||||||||||||||||||||
Sbjct: 205187 ggccgcggcggaggaggagg 205168
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>dbj|AB208795.1| Homo sapiens mRNA for ubiquitously transcribed tetratricopeptide
           repeat variant protein
          Length = 5372

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  ccgcggcggaggaggaggcg 116
           ||||||||||||||||||||
Sbjct: 205 ccgcggcggaggaggaggcg 224
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>gb|M57505.1|SH1LLT Pseudorabies virus ORF1, ORF2, and ORF3 mRNA, complete cds
          Length = 8438

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   ggccgcggcggaggaggagg 114
            ||||||||||||||||||||
Sbjct: 5452 ggccgcggcggaggaggagg 5471


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,387,824
Number of Sequences: 3902068
Number of extensions: 2387824
Number of successful extensions: 51169
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50115
Number of HSP's gapped (non-prelim): 1051
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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