Clone Name	bast43d11
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	emb|Z18804.1|TATFIIDMR T.aestivum TFIID mRNA encoding DNA bindin...	357	2e-95
2	gb|L07604.1|WHTTFIIDA Triticum aestivum DNA-binding protein (TFI...	357	2e-95
3	dbj|AK102871.1| Oryza sativa (japonica cultivar-group) cDNA clon...	204	2e-49
4	ref|XM_469080.1| Oryza sativa (japonica cultivar-group), mRNA	198	1e-47
5	gb|AF464907.1| Oryza sativa TATA-binding protein TBP2 (TBP2) mRN...	198	1e-47
6	dbj|AK099162.1| Oryza sativa (japonica cultivar-group) cDNA clon...	198	1e-47
7	dbj|AK061103.1| Oryza sativa (japonica cultivar-group) cDNA clon...	198	1e-47
8	gb|L13302.1|MZETBPB Zea mays TATA-binding protein mRNA, complete...	196	4e-47
9	gb|L13301.1|MZETBPA Zea mays TATA-binding protein mRNA, complete...	196	4e-47
10	gb|BT023969.1| Zea mays clone EL01N0404F02 mRNA sequence	196	4e-47
11	gb|AY109414.1| Zea mays CL2004_1 mRNA sequence	196	4e-47
12	gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cyto...	127	3e-26
13	ref|NM_196637.1| Oryza sativa (japonica cultivar-group) putative...	111	2e-21
14	emb|X90652.1|ZMDNATBP1 Z.mays DNA for tbp1 gene	111	2e-21
15	dbj|AK108240.1| Oryza sativa (japonica cultivar-group) cDNA clon...	111	2e-21
16	emb|X62494.1|STTATABP S.tuberosum mRNA for TATA-binding protein	109	7e-21
17	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	98	3e-17
18	gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genom...	98	3e-17
19	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	98	3e-17
20	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
21	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	96	1e-16
22	emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa...	96	1e-16
23	gb|AF015785.1|AF015785 Phaseolus vulgaris TATA-box binding prote...	92	2e-15
24	gb|L28002.1|SOYSTBP Glycine max TATA-box binding protein (STBP1)...	92	2e-15
25	emb|X59874.1|TATFIID T.aestivum L. mRNA for TATA binding protein...	88	3e-14
26	gb|U25275.1|MCU25275 Mesembryanthemum crystallinum TATA-binding ...	86	1e-13
27	gb|AF015784.1|AF015784 Phaseolus vulgaris TATA-box binding prote...	84	4e-13
28	ref|XM_324126.1| Neurospora crassa OR74A hypothetical protein ( ...	76	1e-10
29	ref|XM_955126.1| Neurospora crassa OR74A hypothetical protein ( ...	76	1e-10
30	emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone...	74	4e-10
31	ref|NM_001016339.2| Xenopus tropicalis hypothetical protein LOC5...	70	6e-09
32	emb|CR761393.2| Xenopus tropicalis finished cDNA, clone TEgg042d23	70	6e-09
33	dbj|D86722.1| Nicotiana tabacum mRNA for TATA binding protein (T...	70	6e-09
34	gb|U18917.1|SCE8229 Saccharomyces cerevisiae chromosome V cosmid...	68	2e-08
35	emb|X16860.1|SCTFIID Yeast gene for transcription initiation fac...	68	2e-08
36	gb|DQ332231.1| Synthetic construct Saccharomyces cerevisiae clon...	68	2e-08
37	gb|M27135.1|YSCTFIIDA Yeast (S.cerevisiae) TATA-binding protein ...	68	2e-08
38	gb|M26403.1|YSCTFIID S.cerevisiae TATA-box factor (TFIID) gene, ...	68	2e-08
39	gb|M29459.1|YSCBTF1Y Yeast (S.cerevisiae) TATA box factor (BTF1Y...	68	2e-08
40	ref|NM_112190.3| Arabidopsis thaliana TBP1 (TRANSCRIPTION FACTOR...	64	4e-07
41	ref|NM_001035611.1| Arabidopsis thaliana TBP1 (TRANSCRIPTION FAC...	64	4e-07
42	gb|AY463625.1| Arabidopsis thaliana TBP1 (At3g13445) mRNA, parti...	64	4e-07
43	gb|AF349523.1| Arabidopsis thaliana putative TATA sequence-bindi...	64	4e-07
44	gb|AF327429.1| Arabidopsis thaliana putative transcription initi...	64	4e-07
45	ref|NM_205103.1| Gallus gallus TATA box binding protein (TBP), mRNA	64	4e-07
46	gb|AY072455.1| Arabidopsis thaliana transcription initiation fac...	64	4e-07
47	gb|AY054608.1| Arabidopsis thaliana transcription initiation fac...	64	4e-07
48	gb|AF221564.1|AF221564 Gallus gallus TA-TA binding protein 1 mRN...	64	4e-07
49	gb|AF221563.1|AF221563 Gallus gallus TA-TA binding protein 1 mRN...	64	4e-07
50	gb|AF324696.2|AF324696 Arabidopsis thaliana AT3g13445 (AT3g13445...	64	4e-07
51	emb|BX825143.1|CNS0A4SJ Arabidopsis thaliana Full-length cDNA Co...	64	4e-07
52	emb|BX825833.1|CNS0A4OL Arabidopsis thaliana Full-length cDNA Co...	64	4e-07
53	gb|AY084881.1| Arabidopsis thaliana clone 120126 mRNA, complete ...	64	4e-07
54	emb|X54996.1|ATTFIIDB A.thaliana (clone At-2) TFIID mRNA for tra...	64	4e-07
55	dbj|D83127.1|CHKTBPOB Chicken TBP1 mRNA, complete cds	64	4e-07
56	dbj|D83126.1|CHKTBPO Chicken TBP0 mRNA, complete cds	64	4e-07
57	gb|BC106644.1| Xenopus laevis transcription factor, mRNA (cDNA c...	62	2e-06
58	ref|XM_447540.1| Candida glabrata CBS138 hypothetical protein (C...	62	2e-06
59	emb|X66033.1|XLTRAF X.laevis mRNA for transcription factor	62	2e-06
60	emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp...	62	2e-06
61	gb|BC088819.1| Xenopus laevis hypothetical LOC503680, mRNA (cDNA...	62	2e-06
62	ref|XM_623085.1| PREDICTED: Apis mellifera similar to TBP (LOC55...	60	6e-06
63	emb|BX816719.1|CNS0AD78 Arabidopsis thaliana Full-length cDNA Co...	60	6e-06
64	gb|BT019657.1| Homo sapiens TATA box binding protein mRNA, compl...	56	9e-05
65	gb|BT019656.1| Synthetic construct Homo sapiens TATA box binding...	56	9e-05
66	emb|CR618783.1| full-length cDNA clone CS0DC029YI14 of Neuroblas...	56	9e-05
67	emb|CR612496.1| full-length cDNA clone CS0DI033YH14 of Placenta ...	56	9e-05
68	emb|CR590323.1| full-length cDNA clone CS0DI037YI01 of Placenta ...	56	9e-05
69	emb|CR456776.1| Homo sapiens full open reading frame cDNA clone ...	56	9e-05
70	ref|NM_003194.3| Homo sapiens TATA box binding protein (TBP), mRNA	56	9e-05
71	gb|AY158633.1| Passer domesticus TATA-box binding protein mRNA, ...	56	9e-05
72	gb|M34960.1|HUMTFIIDA Homo sapiens transcription factor IID mRNA...	56	9e-05
73	gb|BC109053.1| Homo sapiens TATA box binding protein, mRNA (cDNA...	56	9e-05
74	gb|BC109054.1| Homo sapiens TATA box binding protein, mRNA (cDNA...	56	9e-05
75	gb|BC110341.1| Homo sapiens cDNA clone MGC:117320 IMAGE:5761426,...	56	9e-05
76	emb|Z22828.1|HSTFIIDAA H.sapiens transcription factor TFIID mRNA	56	9e-05
77	emb|X54993.1|HSTFIIDX H.sapiens TFIID mRNA	56	9e-05
78	gb|M55654.1|HUMTFIID Human TATA-binding protein mRNA, complete cds	56	9e-05
79	dbj|D83135.2| Gallus gallus TBP gene, complete cds	54	4e-04
80	ref|NM_104427.2| Arabidopsis thaliana TBP2; DNA binding / RNA po...	52	0.001
81	ref|NM_179481.1| Arabidopsis thaliana TBP2; DNA binding / RNA po...	52	0.001
82	gb|AY376311.1| Gallus gallus proteasome subunit beta-type (PSMB1...	52	0.001
83	gb|AY389957.1| Latimeria chalumnae TATA box binding protein (TBP...	52	0.001
84	gb|AY463626.1| Arabidopsis thaliana TBP2 (TBP2) mRNA, partial cds	52	0.001
85	emb|X54995.1|ATTFIIDA A.thaliana (clone At-1) TFIID mRNA for tra...	52	0.001
86	gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome...	52	0.001
87	gb|BT006488.1| Arabidopsis thaliana At1g55520 gene, complete cds	52	0.001
88	dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...	52	0.001
89	dbj|AK111369.1| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.001
90	gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...	52	0.001
91	gb|AC155338.1| Brassica rapa subsp. pekinensis chromosome Cytoge...	52	0.001
92	ref|XM_749515.1| Aspergillus fumigatus Af293 hypothetical protei...	50	0.006
93	emb|BX824252.1|CNS0A5S4 Arabidopsis thaliana Full-length cDNA Co...	50	0.006
94	ref|XM_594733.2| PREDICTED: Bos taurus similar to TATA-box bindi...	48	0.023
95	gb|BC113308.1| Bos taurus cDNA clone MGC:138100 IMAGE:8089033, c...	48	0.023
96	dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, ...	48	0.023
97	emb|AJ315564.1|RCA315564 Rhodobacter capsulatus pha1 gene, pha2 ...	48	0.023
98	gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g...	46	0.090
99	ref|XM_426476.1| PREDICTED: Gallus gallus similar to DNA segment...	46	0.090
100	gb|AY389958.1| Protopterus dolloi TATA box binding protein (TBP)...	46	0.090
101	ref|XM_501249.1| Yarrowia lipolytica CLIB122, YALI0B23056g predi...	46	0.090
102	gb|AF069526.1|AF069526 Aplysia californica Shaw potassium channe...	46	0.090
103	emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1...	46	0.090
104	ref|XM_470232.1| Oryza sativa (japonica cultivar-group), predic...	44	0.36
105	ref|XM_364033.1| Magnaporthe grisea 70-15 hypothetical protein (...	44	0.36
106	ref|XM_753448.1| Ustilago maydis 521 transcription initiation fa...	44	0.36
107	gb|AY168630.1| Eptatretus stoutii TATA-binding protein (TBP) mRN...	44	0.36
108	emb|CR731077.1|CNS0GR1M Tetraodon nigroviridis full-length cDNA	44	0.36
109	emb|AL031259.1|HS191N21 Human DNA sequence from clone RP1-191N21...	44	0.36
110	dbj|AB035828.1| Coturnix coturnix japonica DNA, microsatellite G...	44	0.36
111	emb|AL113773.1|CNS01B4L Botrytis cinerea strain T4 cDNA library	44	0.36
112	emb|AL111132.1|CNS01939 Botrytis cinerea strain T4 cDNA library	44	0.36
113	gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome...	44	0.36
114	emb|Z96662.1|HS6QT056 H.sapiens telomeric DNA sequence, clone 6Q...	44	0.36
115	dbj|AK068803.1| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.36
116	emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa...	44	0.36
117	gb|L13731.1|ONGTBP Onchocerca volvulus TATA box-binding protein ...	44	0.36
118	gb|AY425965.1| Pongo pygmaeus lymphocryptovirus 1 DNA polymerase...	42	1.4
119	gb|AY191465.1| Pongine herpesvirus 2 DNA polymerase-like gene, p...	42	1.4
120	gb|AY129398.1| Pongo pygmaeus lymphocryptovirus 1 DNA polymerase...	42	1.4
121	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	42	1.4
122	gb|AC079378.2| Rattus norvegicus strain Brown Norway chromosome ...	42	1.4
123	dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic D...	42	1.4
124	gb|L22538.1|SPFDNABIND Spodoptera frugiperda DNA binding protein...	42	1.4
125	dbj|D28600.1|CHKMAFBBZI Chicken gene for bZip nuclear protein Ma...	42	1.4
126	dbj|AB051823.1| Ephydatia fluviatilis TBP mRNA for TATA-box bind...	42	1.4
127	ref|XM_482967.1| Oryza sativa (japonica cultivar-group), mRNA	40	5.6
128	ref|XM_482224.1| Oryza sativa (japonica cultivar-group), mRNA	40	5.6
129	gb|AY753184.1| Xenopus laevis TATA-binding protein 2 mRNA, compl...	40	5.6
130	gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c...	40	5.6
131	gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome...	40	5.6
132	emb|X63133.1|ACTFIID A.castellanii mRNA for TFIID	40	5.6
133	emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segmen...	40	5.6
134	emb|AL669990.1|NCB8J24 Neurospora crassa DNA linkage group II BA...	40	5.6
135	gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, comple...	40	5.6
136	gb|AC103702.3| Homo sapiens chromosome 17, clone RP11-357H14, co...	40	5.6
137	gb|AC008737.11| Homo sapiens chromosome 19 clone CTD-2538G9, com...	40	5.6
138	gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome	40	5.6
139	ref|NM_170536.2| Drosophila melanogaster discs overgrown CG2048-...	40	5.6
140	ref|NM_170535.1| Drosophila melanogaster discs overgrown CG2048-...	40	5.6
141	dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103	40	5.6
142	ref|NM_079863.2| Drosophila melanogaster discs overgrown CG2048-...	40	5.6
143	gb|AE009866.1|AE009866 Pyrobaculum aerophilum strain IM2 section...	40	5.6
144	gb|M93340.2|ACATFIIDB Acanthamoeba castellanii transcription fac...	40	5.6
145	gb|AC008680.5|AC008680 Homo sapiens chromosome 5 clone CTB-53I9,...	40	5.6
146	tpg|BK001774.1| TPA: TPA_exp: Xenopus laevis TBP-related factor ...	40	5.6
147	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
148	dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
149	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
150	gb|AC004847.3|AC004847 Homo sapiens clone RP4-647J21, complete s...	40	5.6
151	gb|AC008220.5|AC008220 Drosophila melanogaster, chromosome 3R, r...	40	5.6
152	gb|AC007975.7|AC007975 Drosophila melanogaster, chromosome 3R, r...	40	5.6
153	gb|AC009789.21|AC009789 Homo sapiens chromosome 17, clone RP11-3...	40	5.6
154	gb|M87493.1|ACATFIIDX Acanthamoeba castellanii transcription fac...	40	5.6
155	gb|AF245690.1|AF245690 Streptomyces verticillus putative N-acety...	40	5.6
156	dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
157	dbj|AP004643.3| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
158	dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
159	dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
160	emb|AJ243806.1|CRE243806 Chlamydomonas reinhardtii dhc1 gene for...	40	5.6
161	dbj|AK099704.1| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.6
162	gb|AF192484.1|AF192484 Drosophila melanogaster discs overgrown (...	40	5.6
163	dbj|AK066733.1| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.6
164	gb|CP000009.1| Gluconobacter oxydans 621H, complete genome	40	5.6
165	gb|AE003776.2| Drosophila melanogaster chromosome 3R, section 11...	40	5.6
166	gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence	40	5.6
167	gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence	40	5.6
168	gb|AF055583.1|AF055583 Drosophila melanogaster casein kinase I h...	40	5.6
169	gb|AF132558.1| Drosophila melanogaster double-time (dbt) mRNA, c...	40	5.6
170	dbj|AK074135.1| Homo sapiens mRNA for FLJ00208 protein	40	5.6

---

>emb|Z18804.1|TATFIIDMR T.aestivum TFIID mRNA encoding DNA binding protein
          Length = 1154

 Score =  357 bits (180), Expect = 2e-95
 Identities = 221/233 (94%), Gaps = 4/233 (1%)
 Strand = Plus / Plus

                                                                       
Query: 184 cggtggatggcggaggcggcg---ctggaggggagccagccggtggatctgtccaagcac 240
           |||||||||||||||||||||   |||||||||||| |||||||||||||| ||||||||
Sbjct: 98  cggtggatggcggaggcggcggcgctggaggggagcgagccggtggatctgaccaagcac 157

                                                                       
Query: 241 ccctccggcatcgtccccacgctccagaatattgtgtcgacggtcaacctggactgtaaa 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 158 ccctccggcatcatccccacgctccagaatattgtgtcgacggtcaacctggactgtaag 217

                                                                       
Query: 301 ttggacctcaaagctatagctctccaggcacgcantgcagagtataaccccaagcgtttt 360
           |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 218 ttggacctgaaagcaatagctctccaggcacgcaatgcagagtataaccccaagcgtttt 277

                                                                
Query: 361 gctgcggttatcatgcggataagagaacc-aaaactaccgcattgatatttgc 412
           ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 278 gctgcagttatcatgcggataagagaaccaaaaactaccgcattgatatttgc 330

---

>gb|L07604.1|WHTTFIIDA Triticum aestivum DNA-binding protein (TFIID) mRNA, complete cds
          Length = 1154

 Score =  357 bits (180), Expect = 2e-95
 Identities = 221/233 (94%), Gaps = 4/233 (1%)
 Strand = Plus / Plus

                                                                       
Query: 184 cggtggatggcggaggcggcg---ctggaggggagccagccggtggatctgtccaagcac 240
           |||||||||||||||||||||   |||||||||||| |||||||||||||| ||||||||
Sbjct: 98  cggtggatggcggaggcggcggcgctggaggggagcgagccggtggatctgaccaagcac 157

                                                                       
Query: 241 ccctccggcatcgtccccacgctccagaatattgtgtcgacggtcaacctggactgtaaa 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 158 ccctccggcatcatccccacgctccagaatattgtgtcgacggtcaacctggactgtaag 217

                                                                       
Query: 301 ttggacctcaaagctatagctctccaggcacgcantgcagagtataaccccaagcgtttt 360
           |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 218 ttggacctgaaagcaatagctctccaggcacgcaatgcagagtataaccccaagcgtttt 277

                                                                
Query: 361 gctgcggttatcatgcggataagagaacc-aaaactaccgcattgatatttgc 412
           ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 278 gctgcagttatcatgcggataagagaaccaaaaactaccgcattgatatttgc 330

---

>dbj|AK102871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112A19, full
           insert sequence
          Length = 1135

 Score =  204 bits (103), Expect = 2e-49
 Identities = 193/222 (86%), Gaps = 1/222 (0%)
 Strand = Plus / Plus

                                                                       
Query: 192 ggcggaggcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcat 251
           ||||| ||||||||||||||||||| |||| ||||| |||  ||||||||||||||||||
Sbjct: 183 ggcggcggcggcgctggaggggagcgagcccgtggacctggtcaagcacccctccggcat 242

                                                                       
Query: 252 cgtccccacgctccagaatattgtgtcgacggtcaacctggactgtaaattggacctcaa 311
           | ||||||||||||| || || ||||||||||||||  |||| || ||||| ||||||||
Sbjct: 243 catccccacgctccaaaacatcgtgtcgacggtcaatttggattgcaaattagacctcaa 302

                                                                       
Query: 312 agctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggttat 371
           |||||||||| | || ||||||| |||||| ||||| || |||||||||||||| |||||
Sbjct: 303 agctatagctttgcaagcacgcaatgcagaatataatccaaagcgttttgctgcagttat 362

                                                     
Query: 372 catgcggataagagaacc-aaaactaccgcattgatatttgc 412
           |||| | ||||||||||| |||||||| ||  ||||||||||
Sbjct: 363 catgagaataagagaaccgaaaactacagctctgatatttgc 404

---

>ref|XM_469080.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1163

 Score =  198 bits (100), Expect = 1e-47
 Identities = 171/195 (87%)
 Strand = Plus / Plus

                                                                       
Query: 199 gcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcatcgtcccc 258
           |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 189 gcggcgctggaggggagcgagcccgtggacctggccaagcacccctccggcatcatcccc 248

                                                                       
Query: 259 acgctccagaatattgtgtcgacggtcaacctggactgtaaattggacctcaaagctata 318
           |||||||| || || || |||||||||||  |||| || ||||| |||||||||||||||
Sbjct: 249 acgctccaaaacatcgtatcgacggtcaatttggattgcaaattagacctcaaagctata 308

                                                                       
Query: 319 gctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggttatcatgcgg 378
           ||| | || || |||| |||||| ||||| || |||||||||||||||||||||||| | 
Sbjct: 309 gctttgcaagctcgcaatgcagaatataatccaaagcgttttgctgcggttatcatgaga 368

                          
Query: 379 ataagagaaccaaaa 393
           |||||||||||||||
Sbjct: 369 ataagagaaccaaaa 383

---

>gb|AF464907.1| Oryza sativa TATA-binding protein TBP2 (TBP2) mRNA, complete cds
          Length = 1071

 Score =  198 bits (100), Expect = 1e-47
 Identities = 171/195 (87%)
 Strand = Plus / Plus

                                                                       
Query: 199 gcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcatcgtcccc 258
           |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 186 gcggcgctggaggggagcgagcccgtggacctggccaagcacccctccggcatcatcccc 245

                                                                       
Query: 259 acgctccagaatattgtgtcgacggtcaacctggactgtaaattggacctcaaagctata 318
           |||||||| || || || |||||||||||  |||| || ||||| |||||||||||||||
Sbjct: 246 acgctccaaaacatcgtatcgacggtcaatttggattgcaaattagacctcaaagctata 305

                                                                       
Query: 319 gctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggttatcatgcgg 378
           ||| | || || |||| |||||| ||||| || |||||||||||||||||||||||| | 
Sbjct: 306 gctttgcaagctcgcaatgcagaatataatccaaagcgttttgctgcggttatcatgaga 365

                          
Query: 379 ataagagaaccaaaa 393
           |||||||||||||||
Sbjct: 366 ataagagaaccaaaa 380

---

>dbj|AK099162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075I02, full
           insert sequence
          Length = 1166

 Score =  198 bits (100), Expect = 1e-47
 Identities = 171/195 (87%)
 Strand = Plus / Plus

                                                                       
Query: 199 gcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcatcgtcccc 258
           |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 192 gcggcgctggaggggagcgagcccgtggacctggccaagcacccctccggcatcatcccc 251

                                                                       
Query: 259 acgctccagaatattgtgtcgacggtcaacctggactgtaaattggacctcaaagctata 318
           |||||||| || || || |||||||||||  |||| || ||||| |||||||||||||||
Sbjct: 252 acgctccaaaacatcgtatcgacggtcaatttggattgcaaattagacctcaaagctata 311

                                                                       
Query: 319 gctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggttatcatgcgg 378
           ||| | || || |||| |||||| ||||| || |||||||||||||||||||||||| | 
Sbjct: 312 gctttgcaagctcgcaatgcagaatataatccaaagcgttttgctgcggttatcatgaga 371

                          
Query: 379 ataagagaaccaaaa 393
           |||||||||||||||
Sbjct: 372 ataagagaaccaaaa 386

---

>dbj|AK061103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-B06, full
           insert sequence
          Length = 1175

 Score =  198 bits (100), Expect = 1e-47
 Identities = 171/195 (87%)
 Strand = Plus / Plus

                                                                       
Query: 199 gcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcatcgtcccc 258
           |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 201 gcggcgctggaggggagcgagcccgtggacctggccaagcacccctccggcatcatcccc 260

                                                                       
Query: 259 acgctccagaatattgtgtcgacggtcaacctggactgtaaattggacctcaaagctata 318
           |||||||| || || || |||||||||||  |||| || ||||| |||||||||||||||
Sbjct: 261 acgctccaaaacatcgtatcgacggtcaatttggattgcaaattagacctcaaagctata 320

                                                                       
Query: 319 gctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggttatcatgcgg 378
           ||| | || || |||| |||||| ||||| || |||||||||||||||||||||||| | 
Sbjct: 321 gctttgcaagctcgcaatgcagaatataatccaaagcgttttgctgcggttatcatgaga 380

                          
Query: 379 ataagagaaccaaaa 393
           |||||||||||||||
Sbjct: 381 ataagagaaccaaaa 395

---

>gb|L13302.1|MZETBPB Zea mays TATA-binding protein mRNA, complete cds
          Length = 1400

 Score =  196 bits (99), Expect = 4e-47
 Identities = 195/226 (86%), Gaps = 1/226 (0%)
 Strand = Plus / Plus

                                                                       
Query: 188 ggatggcggaggcggcgctggaggggagccagccggtggatctgtccaagcacccctccg 247
           ||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 171 ggatggcggagccggggctcgagggcagccagccggtggatctgtccaagcacccctctg 230

                                                                       
Query: 248 gcatcgtccccacgctccagaatattgtgtcgacggtcaacctggactgtaaattggacc 307
           ||||||||||||||||||||||||| || || || || ||  |||| |||||| | ||||
Sbjct: 231 gcatcgtccccacgctccagaatatcgtatcaacagttaatttggattgtaaacttgacc 290

                                                                       
Query: 308 tcaaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcgg 367
           ||||||| |||||| | || ||||| | ||| ||||||||||| |||||||||||||| |
Sbjct: 291 tcaaagcaatagctttgcaagcacgaaatgcggagtataacccaaagcgttttgctgcag 350

                                                         
Query: 368 ttatcatgcggataagagaa-ccaaaactaccgcattgatatttgc 412
           | |||||| | ||||||||| ||||||| || ||| ||||||||||
Sbjct: 351 tcatcatgagaataagagaacccaaaaccacagcactgatatttgc 396

---

>gb|L13301.1|MZETBPA Zea mays TATA-binding protein mRNA, complete cds
          Length = 1353

 Score =  196 bits (99), Expect = 4e-47
 Identities = 195/226 (86%), Gaps = 1/226 (0%)
 Strand = Plus / Plus

                                                                       
Query: 188 ggatggcggaggcggcgctggaggggagccagccggtggatctgtccaagcacccctccg 247
           ||||||||||| ||| ||| ||||  ||||||||||||||||||||||||||||||||||
Sbjct: 104 ggatggcggagccggggctcgaggacagccagccggtggatctgtccaagcacccctccg 163

                                                                       
Query: 248 gcatcgtccccacgctccagaatattgtgtcgacggtcaacctggactgtaaattggacc 307
           |||||||||||||||||||||||||||| || || || ||  |||| |||||| | ||||
Sbjct: 164 gcatcgtccccacgctccagaatattgtatcaacagttaatttggattgtaaacttgacc 223

                                                                       
Query: 308 tcaaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcgg 367
           ||||||| |||||| | || ||| | | ||| ||||||||||| |||||||||||||| |
Sbjct: 224 tcaaagcaatagctttgcaagcaagaaatgcggagtataacccaaagcgttttgctgcag 283

                                                         
Query: 368 ttatcatgcggataagagaa-ccaaaactaccgcattgatatttgc 412
           | |||||| | ||||||||| ||||||| || ||| ||||||||||
Sbjct: 284 taatcatgagaataagagaacccaaaaccacggcactgatatttgc 329

---

>gb|BT023969.1| Zea mays clone EL01N0404F02 mRNA sequence
          Length = 1382

 Score =  196 bits (99), Expect = 4e-47
 Identities = 195/226 (86%), Gaps = 1/226 (0%)
 Strand = Plus / Plus

                                                                       
Query: 188 ggatggcggaggcggcgctggaggggagccagccggtggatctgtccaagcacccctccg 247
           ||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 222 ggatggcggagccggggctcgagggcagccagccggtggatctgtccaagcacccctctg 281

                                                                       
Query: 248 gcatcgtccccacgctccagaatattgtgtcgacggtcaacctggactgtaaattggacc 307
           ||||||||||||||||||||||||| || || || || ||  |||| |||||| | ||||
Sbjct: 282 gcatcgtccccacgctccagaatatcgtatcaacagttaatttggattgtaaacttgacc 341

                                                                       
Query: 308 tcaaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcgg 367
           ||||||| |||||| | || ||||| | ||| ||||||||||| |||||||||||||| |
Sbjct: 342 tcaaagcaatagctttgcaagcacgaaatgcggagtataacccaaagcgttttgctgcag 401

                                                         
Query: 368 ttatcatgcggataagagaa-ccaaaactaccgcattgatatttgc 412
           | |||||| | ||||||||| ||||||| || ||| ||||||||||
Sbjct: 402 tcatcatgagaataagagaacccaaaaccacggcactgatatttgc 447

---

>gb|AY109414.1| Zea mays CL2004_1 mRNA sequence
          Length = 1400

 Score =  196 bits (99), Expect = 4e-47
 Identities = 195/226 (86%), Gaps = 1/226 (0%)
 Strand = Plus / Plus

                                                                       
Query: 188 ggatggcggaggcggcgctggaggggagccagccggtggatctgtccaagcacccctccg 247
           ||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 171 ggatggcggagccggggctcgagggcagccagccggtggatctgtccaagcacccctctg 230

                                                                       
Query: 248 gcatcgtccccacgctccagaatattgtgtcgacggtcaacctggactgtaaattggacc 307
           ||||||||||||||||||||||||| || || || || ||  |||| |||||| | ||||
Sbjct: 231 gcatcgtccccacgctccagaatatcgtatcaacagttaatttggattgtaaacttgacc 290

                                                                       
Query: 308 tcaaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcgg 367
           ||||||| |||||| | || ||||| | ||| ||||||||||| |||||||||||||| |
Sbjct: 291 tcaaagcaatagctttgcaagcacgaaatgcggagtataacccaaagcgttttgctgcag 350

                                                         
Query: 368 ttatcatgcggataagagaa-ccaaaactaccgcattgatatttgc 412
           | |||||| | ||||||||| ||||||| || ||| ||||||||||
Sbjct: 351 tcatcatgagaataagagaacccaaaaccacggcactgatatttgc 396

---

>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like
             protein, putative DNA-binding protein homolog,
             TATA-binding protein, hypothetical protein M3E9.200,
             3-glucanase, K-exchanger-like protein, small heat
             shock-like protein, methionine synthase protein, putative
             far-red impaired response protein, and putative vegetative
             storage protein genes, complete cds
          Length = 100773

 Score =  127 bits (64), Expect = 3e-26
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                         
Query: 188   ggatggcggaggcggcgctggaggggagccagccggtggatctgtccaagcacccctccg 247
             ||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 35725 ggatggcggagccggggctcgagggcagccagccggtggatctgtccaagcacccctccg 35666

                                 
Query: 248   gcatcgtccccacgctccag 267
             ||||||||||||||||||||
Sbjct: 35665 gcatcgtccccacgctccag 35646



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 290   tggactgtaaattggacctcaaagctatagctctccaggcacgcantgcagagtataacc 349
             |||| |||||| | ||||||||||| |||||| | || ||||| | ||| ||||||||||
Sbjct: 33945 tggattgtaaacttgacctcaaagcaatagctttgcaagcacgaaatgcggagtataacc 33886

                  
Query: 350   ccaag 354
             |||||
Sbjct: 33885 ccaag 33881



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 52/61 (85%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                         
Query: 353   agcgttttgctgcggttatcatgcggataagagaa-ccaaaactaccgcattgatatttg 411
             ||||||||||||| || |||||| | ||||| ||| ||||||| || ||| |||||||||
Sbjct: 33473 agcgttttgctgcagtcatcatgagaataagggaacccaaaaccacagcactgatatttg 33414

              
Query: 412   c 412
             |
Sbjct: 33413 c 33413

---

>ref|NM_196637.1| Oryza sativa (japonica cultivar-group) putative transcription
           initiation factor TFIID-1 (OSJNBa0019M20.9), mRNA
          Length = 675

 Score =  111 bits (56), Expect = 2e-21
 Identities = 145/175 (82%)
 Strand = Plus / Plus

                                                                       
Query: 218 agccggtggatctgtccaagcacccctccggcatcgtccccacgctccagaatattgtgt 277
           |||||||||||||   | ||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 95  agccggtggatctcgtcgagcacccctccgggatcgtccccaccctccagaacattgttt 154

                                                                       
Query: 278 cgacggtcaacctggactgtaaattggacctcaaagctatagctctccaggcacgcantg 337
           |||| || || |||||||| |  ||||| || |||   || ||||| ||||| || | ||
Sbjct: 155 cgacagtaaatctggactgcaggttggatctgaaaaaaatcgctctacaggctcgtaatg 214

                                                                  
Query: 338 cagagtataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaa 392
           ||||||| ||||| |||||||||||||| ||||||||| ||||||| || |||||
Sbjct: 215 cagagtacaacccaaagcgttttgctgcagttatcatgaggataagggacccaaa 269

---

>emb|X90652.1|ZMDNATBP1 Z.mays DNA for tbp1 gene
          Length = 7497

 Score =  111 bits (56), Expect = 2e-21
 Identities = 74/80 (92%)
 Strand = Plus / Plus

                                                                        
Query: 188  ggatggcggaggcggcgctggaggggagccagccggtggatctgtccaagcacccctccg 247
            ||||||||||| ||  ||| ||||  ||||||||||||||||||||||||||||||||||
Sbjct: 1665 ggatggcggagccgaggctcgaggacagccagccggtggatctgtccaagcacccctccg 1724

                                
Query: 248  gcatcgtccccacgctccag 267
            ||||||||||||||||||||
Sbjct: 1725 gcatcgtccccacgctccag 1744



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 53/61 (86%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                        
Query: 353  agcgttttgctgcggttatcatgcggataagagaa-ccaaaactaccgcattgatatttg 411
            ||||||||||||| || |||||| | ||||||||| ||||||| || ||| |||||||||
Sbjct: 4006 agcgttttgctgcagtaatcatgagaataagagaacccaaaaccacggcactgatatttg 4065

             
Query: 412  c 412
            |
Sbjct: 4066 c 4066

---

>dbj|AK108240.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G12, full
           insert sequence
          Length = 1186

 Score =  111 bits (56), Expect = 2e-21
 Identities = 145/175 (82%)
 Strand = Plus / Plus

                                                                       
Query: 218 agccggtggatctgtccaagcacccctccggcatcgtccccacgctccagaatattgtgt 277
           |||||||||||||   | ||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 240 agccggtggatctcgtcgagcacccctccgggatcgtccccaccctccagaacattgttt 299

                                                                       
Query: 278 cgacggtcaacctggactgtaaattggacctcaaagctatagctctccaggcacgcantg 337
           |||| || || |||||||| |  ||||| || |||   || ||||| ||||| || | ||
Sbjct: 300 cgacagtaaatctggactgcaggttggatctgaaaaaaatcgctctacaggctcgtaatg 359

                                                                  
Query: 338 cagagtataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaa 392
           ||||||| ||||| |||||||||||||| ||||||||| ||||||| || |||||
Sbjct: 360 cagagtacaacccaaagcgttttgctgcagttatcatgaggataagggacccaaa 414

---

>emb|X62494.1|STTATABP S.tuberosum mRNA for TATA-binding protein
          Length = 1148

 Score =  109 bits (55), Expect = 7e-21
 Identities = 153/186 (82%)
 Strand = Plus / Plus

                                                                       
Query: 208 gaggggagccagccggtggatctgtccaagcacccctccggcatcgtccccacgctccag 267
           |||||||||||||| ||||||||  |||||||||| || || || ||||| || || |||
Sbjct: 228 gaggggagccagccagtggatcttaccaagcacccttctggaatagtccctactctgcag 287

                                                                       
Query: 268 aatattgtgtcgacggtcaacctggactgtaaattggacctcaaagctatagctctccag 327
           |||||||| || ||||| ||  ||||||| || |||||||| |||||||| || || || 
Sbjct: 288 aatattgtctcaacggttaatttggactgcaagttggacctgaaagctattgcacttcaa 347

                                                                       
Query: 328 gcacgcantgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaa 387
           || || | ||||||||| || || |||||||||||||| || |||||| | || ||||||
Sbjct: 348 gctcgaaatgcagagtacaatccgaagcgttttgctgcagtgatcatgagaattagagaa 407

                 
Query: 388 ccaaaa 393
           ||||||
Sbjct: 408 ccaaaa 413

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                            
Query: 199      gcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcatcgtcccc 258
                |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 25348358 gcggcgctggaggggagcgagcccgtggacctggccaagcacccctccggcatcatcccc 25348417

                         
Query: 259      acgctccag 267
                |||||||||
Sbjct: 25348418 acgctccag 25348426



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                         
Query: 353      agcgttttgctgcggttatcatgcggataagagaaccaaaa 393
                ||||||||||||||||||||||| | |||||||||||||||
Sbjct: 25350096 agcgttttgctgcggttatcatgagaataagagaaccaaaa 25350136



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 277      tcgacggtcaacctggactgtaaattggacctcaaagctatagctctccaggcacgcant 336
                |||||||||||  |||| || ||||| |||||||||||||||||| | || || |||| |
Sbjct: 25349413 tcgacggtcaatttggattgcaaattagacctcaaagctatagctttgcaagctcgcaat 25349472

                           
Query: 337      gcagagtataa 347
                ||||| |||||
Sbjct: 25349473 gcagaatataa 25349483



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 124     cgccaccgccccctcctccctc 145
               ||||||||||||||||||||||
Sbjct: 2697370 cgccaccgccccctcctccctc 2697349

---

>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete
             sequence
          Length = 152828

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                         
Query: 199   gcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcatcgtcccc 258
             |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 95002 gcggcgctggaggggagcgagcccgtggacctggccaagcacccctccggcatcatcccc 94943

                      
Query: 259   acgctccag 267
             |||||||||
Sbjct: 94942 acgctccag 94934



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                      
Query: 353   agcgttttgctgcggttatcatgcggataagagaaccaaaa 393
             ||||||||||||||||||||||| | |||||||||||||||
Sbjct: 93264 agcgttttgctgcggttatcatgagaataagagaaccaaaa 93224



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                         
Query: 277   tcgacggtcaacctggactgtaaattggacctcaaagctatagctctccaggcacgcant 336
             |||||||||||  |||| || ||||| |||||||||||||||||| | || || |||| |
Sbjct: 93947 tcgacggtcaatttggattgcaaattagacctcaaagctatagctttgcaagctcgcaat 93888

                        
Query: 337   gcagagtataa 347
             ||||| |||||
Sbjct: 93887 gcagaatataa 93877

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                            
Query: 199      gcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcatcgtcccc 258
                |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 25439667 gcggcgctggaggggagcgagcccgtggacctggccaagcacccctccggcatcatcccc 25439726

                         
Query: 259      acgctccag 267
                |||||||||
Sbjct: 25439727 acgctccag 25439735



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                         
Query: 353      agcgttttgctgcggttatcatgcggataagagaaccaaaa 393
                ||||||||||||||||||||||| | |||||||||||||||
Sbjct: 25441405 agcgttttgctgcggttatcatgagaataagagaaccaaaa 25441445



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 277      tcgacggtcaacctggactgtaaattggacctcaaagctatagctctccaggcacgcant 336
                |||||||||||  |||| || ||||| |||||||||||||||||| | || || |||| |
Sbjct: 25440722 tcgacggtcaatttggattgcaaattagacctcaaagctatagctttgcaagctcgcaat 25440781

                           
Query: 337      gcagagtataa 347
                ||||| |||||
Sbjct: 25440782 gcagaatataa 25440792



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 124     cgccaccgccccctcctccctc 145
               ||||||||||||||||||||||
Sbjct: 2697480 cgccaccgccccctcctccctc 2697459

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                            
Query: 192      ggcggaggcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcat 251
                ||||| ||||||||||||||||||| |||| ||||| |||  ||||||||||||||||||
Sbjct: 24065027 ggcggcggcggcgctggaggggagcgagcccgtggacctggtcaagcacccctccggcat 24065086

                                
Query: 252      cgtccccacgctccag 267
                | ||||||||||||||
Sbjct: 24065087 catccccacgctccag 24065102



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                            
Query: 274      gtgtcgacggtcaacctggactgtaaattggacctcaaagctatagctctccaggcacgc 333
                ||||||||||||||  |||| || ||||| |||||||||||||||||| | || ||||||
Sbjct: 24066144 gtgtcgacggtcaatttggattgcaaattagacctcaaagctatagctttgcaagcacgc 24066203

                              
Query: 334      antgcagagtataa 347
                | |||||| |||||
Sbjct: 24066204 aatgcagaatataa 24066217



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                            
Query: 353      agcgttttgctgcggttatcatgcggataagagaacc-aaaactaccgcattgatatttg 411
                ||||||||||||| ||||||||| | ||||||||||| |||||||| ||  |||||||||
Sbjct: 24066808 agcgttttgctgcagttatcatgagaataagagaaccgaaaactacagctctgatatttg 24066867

                 
Query: 412      c 412
                |
Sbjct: 24066868 c 24066868



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 115     tcacgcccacgccaccgccccctcctccctcgcc 148
               ||||||||||||| || | |||||||||||||||
Sbjct: 8487263 tcacgcccacgccgcctcgccctcctccctcgcc 8487296

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                            
Query: 192      ggcggaggcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcat 251
                ||||| ||||||||||||||||||| |||| ||||| |||  ||||||||||||||||||
Sbjct: 23993233 ggcggcggcggcgctggaggggagcgagcccgtggacctggtcaagcacccctccggcat 23993292

                                
Query: 252      cgtccccacgctccag 267
                | ||||||||||||||
Sbjct: 23993293 catccccacgctccag 23993308



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                            
Query: 274      gtgtcgacggtcaacctggactgtaaattggacctcaaagctatagctctccaggcacgc 333
                ||||||||||||||  |||| || ||||| |||||||||||||||||| | || ||||||
Sbjct: 23994350 gtgtcgacggtcaatttggattgcaaattagacctcaaagctatagctttgcaagcacgc 23994409

                              
Query: 334      antgcagagtataa 347
                | |||||| |||||
Sbjct: 23994410 aatgcagaatataa 23994423



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                            
Query: 353      agcgttttgctgcggttatcatgcggataagagaacc-aaaactaccgcattgatatttg 411
                ||||||||||||| ||||||||| | ||||||||||| |||||||| ||  |||||||||
Sbjct: 23995014 agcgttttgctgcagttatcatgagaataagagaaccgaaaactacagctctgatatttg 23995073

                 
Query: 412      c 412
                |
Sbjct: 23995074 c 23995074



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 115     tcacgcccacgccaccgccccctcctccctcgcc 148
               ||||||||||||| || | |||||||||||||||
Sbjct: 8487146 tcacgcccacgccgcctcgccctcctccctcgcc 8487179

---

>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 176388

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                         
Query: 192   ggcggaggcggcgctggaggggagccagccggtggatctgtccaagcacccctccggcat 251
             ||||| ||||||||||||||||||| |||| ||||| |||  ||||||||||||||||||
Sbjct: 22369 ggcggcggcggcgctggaggggagcgagcccgtggacctggtcaagcacccctccggcat 22310

                             
Query: 252   cgtccccacgctccag 267
             | ||||||||||||||
Sbjct: 22309 catccccacgctccag 22294



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 274   gtgtcgacggtcaacctggactgtaaattggacctcaaagctatagctctccaggcacgc 333
             ||||||||||||||  |||| || ||||| |||||||||||||||||| | || ||||||
Sbjct: 21252 gtgtcgacggtcaatttggattgcaaattagacctcaaagctatagctttgcaagcacgc 21193

                           
Query: 334   antgcagagtataa 347
             | |||||| |||||
Sbjct: 21192 aatgcagaatataa 21179



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                         
Query: 353   agcgttttgctgcggttatcatgcggataagagaacc-aaaactaccgcattgatatttg 411
             ||||||||||||| ||||||||| | ||||||||||| |||||||| ||  |||||||||
Sbjct: 20588 agcgttttgctgcagttatcatgagaataagagaaccgaaaactacagctctgatatttg 20529

              
Query: 412   c 412
             |
Sbjct: 20528 c 20528

---

>gb|AF015785.1|AF015785 Phaseolus vulgaris TATA-box binding protein (PVTBP2) mRNA, complete
           cds
          Length = 837

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 147/181 (81%)
 Strand = Plus / Plus

                                                                       
Query: 206 tggaggggagccagccggtggatctgtccaagcacccctccggcatcgtccccacgctcc 265
           |||| |||| |||||||||||||||    ||||| || || || ||||| ||||| || |
Sbjct: 33  tggaagggaaccagccggtggatctacagaagcatccttctgggatcgtgcccacccttc 92

                                                                       
Query: 266 agaatattgtgtcgacggtcaacctggactgtaaattggacctcaaagctatagctctcc 325
           | ||||||||||| || |||||  |||||||||| |||||||||||| | || || || |
Sbjct: 93  aaaatattgtgtccaccgtcaatttggactgtaagttggacctcaaaacaattgcactac 152

                                                                       
Query: 326 aggcacgcantgcagagtataaccccaagcgttttgctgcggttatcatgcggataagag 385
           | || || | ||| ||||| || ||||||||||||||||| ||||| ||| |||||||||
Sbjct: 153 aagctcgtaatgctgagtacaatcccaagcgttttgctgctgttattatgaggataagag 212

            
Query: 386 a 386
           |
Sbjct: 213 a 213

---

>gb|L28002.1|SOYSTBP Glycine max TATA-box binding protein (STBP1) mRNA, complete cds
          Length = 1070

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 147/181 (81%)
 Strand = Plus / Plus

                                                                       
Query: 206 tggaggggagccagccggtggatctgtccaagcacccctccggcatcgtccccacgctcc 265
           |||| ||||||||||||||||||||    ||||| || || || ||||| || || || |
Sbjct: 191 tggaagggagccagccggtggatctacagaagcatccttctgggatcgtgcctacccttc 250

                                                                       
Query: 266 agaatattgtgtcgacggtcaacctggactgtaaattggacctcaaagctatagctctcc 325
           | ||||||||||| || |||||  |||||||||| |||||||||||| | || || || |
Sbjct: 251 aaaatattgtgtccacagtcaatttggactgtaagttggacctcaaaacaattgcacttc 310

                                                                       
Query: 326 aggcacgcantgcagagtataaccccaagcgttttgctgcggttatcatgcggataagag 385
           | || || | ||||||||| || ||||||||||||||||| || || ||| |||||||||
Sbjct: 311 aagctcgtaatgcagagtacaatcccaagcgttttgctgctgtcattatgaggataagag 370

            
Query: 386 a 386
           |
Sbjct: 371 a 371

---

>emb|X59874.1|TATFIID T.aestivum L. mRNA for TATA binding protein (TFIID)
          Length = 1145

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                       
Query: 217 cagccggtggatctgtccaagcacccctccggcatcgtccccacgctccagaatattgtg 276
           ||||||||||||||  ||| |||||||||||||||||||||    |||||||| ||||||
Sbjct: 245 cagccggtggatctcgccaggcacccctccggcatcgtcccggtcctccagaacattgtg 304

                                                                       
Query: 277 tcgacggtcaacctggactgtaaattggacctcaaagctatagctctccaggcacgcant 336
           || || || || |||||||| |  ||||| || |||   || ||  | ||||| || | |
Sbjct: 305 tcaactgttaatctggactgcaggttggatctgaaacaaattgccttacaggcccgtaat 364

                                                          
Query: 337 gcagagtataaccccaagcgttttgctgcggttatcatgcggataag 383
           |||||||| ||||| ||||||||||| |||||||||||| |||||||
Sbjct: 365 gcagagtacaacccaaagcgttttgcagcggttatcatgaggataag 411

---

>gb|U25275.1|MCU25275 Mesembryanthemum crystallinum TATA-binding protein mRNA, complete
           cds
          Length = 1221

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 129/158 (81%)
 Strand = Plus / Plus

                                                                       
Query: 235 aagcacccctccggcatcgtccccacgctccagaatattgtgtcgacggtcaacctggac 294
           |||||||| || || |||||||| ||||| ||||||||||| || || || ||| |||||
Sbjct: 365 aagcacccatctgggatcgtcccgacgctgcagaatattgtctcaactgtaaacttggac 424

                                                                       
Query: 295 tgtaaattggacctcaaagctatagctctccaggcacgcantgcagagtataaccccaag 354
           || |||||||| || ||||| || || || || || || |  ||||| |||||||| |||
Sbjct: 425 tgcaaattggatctgaaagccattgcactgcaagctcgtaacgcagaatataacccaaag 484

                                                 
Query: 355 cgttttgctgcggttatcatgcggataagagaaccaaa 392
           ||||||||||| ||||| ||| ||||||| || |||||
Sbjct: 485 cgttttgctgccgttattatgaggataagggagccaaa 522

---

>gb|AF015784.1|AF015784 Phaseolus vulgaris TATA-box binding protein (PVTBP1) mRNA, complete
           cds
          Length = 829

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 113/137 (82%)
 Strand = Plus / Plus

                                                                       
Query: 250 atcgtccccacgctccagaatattgtgtcgacggtcaacctggactgtaaattggacctc 309
           ||||| ||||| || || ||||||||||| ||||||||  |||| |||||||||||||||
Sbjct: 100 atcgtgcccacccttcaaaatattgtgtccacggtcaatttggattgtaaattggacctc 159

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||| | || || || || || || |  || ||||| || ||||||||||||||||| |||
Sbjct: 160 aaaacaattgcactacaagctcgtaacgctgagtacaatcccaagcgttttgctgctgtt 219

                            
Query: 370 atcatgcggataagaga 386
           || ||| ||||||||||
Sbjct: 220 attatgaggataagaga 236

---

>ref|XM_324126.1| Neurospora crassa OR74A hypothetical protein ( Chain A, Tata-Box
           Binding Protein (Ytbp) Complexed With Dna Containing
           Tata-Box ) (NCU04770.1) partial mRNA
          Length = 774

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 340 gagtataaccccaagcgttttgctgcggttatcatgcg 377
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gagtataaccccaagcgttttgctgcggttatcatgcg 365

---

>ref|XM_955126.1| Neurospora crassa OR74A hypothetical protein ( Chain A, Tata-Box
           Binding Protein (Ytbp) Complexed With Dna Containing
           Tata-Box ) (NCU04770.1) partial mRNA
          Length = 774

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 340 gagtataaccccaagcgttttgctgcggttatcatgcg 377
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gagtataaccccaagcgttttgctgcggttatcatgcg 365

---

>emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone B15B10
          Length = 77986

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                  
Query: 341   agtataaccccaagcgttttgctgcggttatcatgcg 377
             |||||||||||||||||||||||||||||||||||||
Sbjct: 61286 agtataaccccaagcgttttgctgcggttatcatgcg 61250

---

>ref|NM_001016339.2| Xenopus tropicalis hypothetical protein LOC549093 (LOC549093), mRNA
          Length = 1681

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 336 tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaacca 390
           ||||||||||||||| |||||||||||||| ||||| ||| ||||| ||||||||
Sbjct: 534 tgcagagtataaccctaagcgttttgctgccgttataatgaggatacgagaacca 588

---

>emb|CR761393.2| Xenopus tropicalis finished cDNA, clone TEgg042d23
          Length = 1681

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 336 tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaacca 390
           ||||||||||||||| |||||||||||||| ||||| ||| ||||| ||||||||
Sbjct: 534 tgcagagtataaccctaagcgttttgctgccgttataatgaggatacgagaacca 588

---

>dbj|D86722.1| Nicotiana tabacum mRNA for TATA binding protein (TBP), complete cds
          Length = 1240

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 145/182 (79%)
 Strand = Plus / Plus

                                                                       
Query: 211 gggagccagccggtggatctgtccaagcacccctccggcatcgtccccacgctccagaat 270
           |||| |||||| |||||| |||| |||||||| || || || || || || || ||||||
Sbjct: 400 gggaaccagccagtggatttgtctaagcacccatctgggattgtgcctactcttcagaat 459

                                                                       
Query: 271 attgtgtcgacggtcaacctggactgtaaattggacctcaaagctatagctctccaggca 330
           || || || || |||||| |||| || || ||||| || |||||||| ||  | || |||
Sbjct: 460 atcgtctcaactgtcaacttggattgcaagttggatcttaaagctattgcattgcaagca 519

                                                                       
Query: 331 cgcantgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaacca 390
           || | ||| || || || || |||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 520 cgtaatgctgaatacaatccaaagcgttttgctgctgttattatgaggataagagaacca 579

             
Query: 391 aa 392
           ||
Sbjct: 580 aa 581

---

>gb|U18917.1|SCE8229 Saccharomyces cerevisiae chromosome V cosmids 8229, 9115,  9132, 9981,
             and lambda clones 7990 and 6134
          Length = 67883

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 336   tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaaa 393
             |||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 23559 tgcagaatataaccccaagcgttttgctgctgtcatcatgcgtattagagagccaaaa 23616

---

>emb|X16860.1|SCTFIID Yeast gene for transcription initiation factor IID (TFIID)
          Length = 1140

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 336 tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaaa 393
           |||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 513 tgcagaatataaccccaagcgttttgctgctgtcatcatgcgtattagagagccaaaa 570

---

>gb|DQ332231.1| Synthetic construct Saccharomyces cerevisiae clone FLH143423.01X
           SPT15 gene, complete sequence
          Length = 723

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 336 tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaaa 393
           |||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 273 tgcagaatataaccccaagcgttttgctgctgtcatcatgcgtattagagagccaaaa 330

---

>gb|M27135.1|YSCTFIIDA Yeast (S.cerevisiae) TATA-binding protein (TFIID) gene, complete cds
          Length = 2439

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                      
Query: 336  tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaaa 393
            |||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 1509 tgcagaatataaccccaagcgttttgctgctgtcatcatgcgtattagagagccaaaa 1566

---

>gb|M26403.1|YSCTFIID S.cerevisiae TATA-box factor (TFIID) gene, 5'flank
          Length = 1157

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 336 tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaaa 393
           |||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 545 tgcagaatataaccccaagcgttttgctgctgtcatcatgcgtattagagagccaaaa 602

---

>gb|M29459.1|YSCBTF1Y Yeast (S.cerevisiae) TATA box factor (BTF1Y) gene, complete cds
          Length = 1254

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 336 tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaaa 393
           |||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 647 tgcagaatataaccccaagcgttttgctgctgtcatcatgcgtattagagagccaaaa 704

---

>ref|NM_112190.3| Arabidopsis thaliana TBP1 (TRANSCRIPTION FACTOR IID-1); DNA binding
           / RNA polymerase II transcription factor AT3G13445
           (TBP1) transcript variant AT3G13445.1 mRNA, complete cds
          Length = 1143

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 381 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 440

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 441 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 487

---

>ref|NM_001035611.1| Arabidopsis thaliana TBP1 (TRANSCRIPTION FACTOR IID-1); DNA binding
           / RNA polymerase II transcription factor AT3G13445
           (TBP1) transcript variant AT3G13445.2 mRNA, complete cds
          Length = 1324

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 381 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 440

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 441 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 487

---

>gb|AY463625.1| Arabidopsis thaliana TBP1 (At3g13445) mRNA, partial cds
          Length = 600

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 121 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 180

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 181 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 227

---

>gb|AF349523.1| Arabidopsis thaliana putative TATA sequence-binding transcription
           initiation factor protein (At3g13445) mRNA, complete cds
          Length = 653

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 121 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 180

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 181 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 227

---

>gb|AF327429.1| Arabidopsis thaliana putative transcription initiation factor
           TFIID-1 (At3g13445) mRNA, complete cds
          Length = 1064

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 381 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 440

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 441 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 487

---

>ref|NM_205103.1| Gallus gallus TATA box binding protein (TBP), mRNA
          Length = 2184

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaacca 390
           ||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 523 tataatcccaagcgttttgctgctgttattatgaggataagagaacca 570

---

>gb|AY072455.1| Arabidopsis thaliana transcription initiation factor TFIID-1
           (At3g13460; MRP15.10) mRNA, complete cds
          Length = 674

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 121 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 180

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 181 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 227

---

>gb|AY054608.1| Arabidopsis thaliana transcription initiation factor TFIID-1
           (TATA-box factor 1) (TATA sequence-binding protein 1)
           (TBP-1) (At3g13460; MRP15.10) mRNA, complete cds
          Length = 1047

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 381 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 440

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 441 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 487

---

>gb|AF221564.1|AF221564 Gallus gallus TA-TA binding protein 1 mRNA, partial cds
          Length = 630

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaacca 390
           ||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 427 tataatcccaagcgttttgctgctgttattatgaggataagagaacca 474

---

>gb|AF221563.1|AF221563 Gallus gallus TA-TA binding protein 1 mRNA, partial cds
          Length = 630

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaacca 390
           ||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 427 tataatcccaagcgttttgctgctgttattatgaggataagagaacca 474

---

>gb|AF324696.2|AF324696 Arabidopsis thaliana AT3g13445 (AT3g13445/MRP15_8) mRNA, complete
           cds
          Length = 1160

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 493 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 552

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 553 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 599

---

>emb|BX825143.1|CNS0A4SJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL15ZE01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 963

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 322 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 381

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 382 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 428

---

>emb|BX825833.1|CNS0A4OL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL66ZA07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 773

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 12  aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 71

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 72  ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 118

---

>gb|AY084881.1| Arabidopsis thaliana clone 120126 mRNA, complete sequence
          Length = 1132

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 371 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 430

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 431 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 477

---

>emb|X54996.1|ATTFIIDB A.thaliana (clone At-2) TFIID mRNA for transcription initiation
           factor II
          Length = 1109

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 310 aaagctatagctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggtt 369
           ||||| |||||| | ||||| || | ||| || ||||| |||||||||||||||||||| 
Sbjct: 348 aaagccatagctttgcaggctcggaatgctgaatataatcccaagcgttttgctgcggtg 407

                                                          
Query: 370 atcatgcggataagagaacc-aaaactaccgcattgatatttgcctc 415
           || ||| |||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 408 ataatgaggatcagagaaccgaagactacagcattaatattcgcctc 454

---

>dbj|D83127.1|CHKTBPOB Chicken TBP1 mRNA, complete cds
          Length = 2213

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaacca 390
           ||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 523 tataatcccaagcgttttgctgctgttattatgaggataagagaacca 570

---

>dbj|D83126.1|CHKTBPO Chicken TBP0 mRNA, complete cds
          Length = 1736

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaacca 390
           ||||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 699 tataatcccaagcgttttgctgctgttattatgaggataagagaacca 746

---

>gb|BC106644.1| Xenopus laevis transcription factor, mRNA (cDNA clone MGC:132200
           IMAGE:5085399), complete cds
          Length = 1638

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 336 tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||||||||||||| |||||||||||||| ||||| ||| ||||| ||||
Sbjct: 583 tgcagagtataacccaaagcgttttgctgctgttataatgaggatacgaga 633

---

>ref|XM_447540.1| Candida glabrata CBS138 hypothetical protein (CAGL0I06688g) partial
           mRNA
          Length = 702

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 82/98 (83%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                       
Query: 319 gctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggttatcatgcgg 378
           ||||| || ||||| | ||| ||||||||||| ||||||||||| || ||||| ||||| 
Sbjct: 235 gctctgcacgcacgtaatgccgagtataaccctaagcgttttgccgctgttattatgcgt 294

                                                 
Query: 379 ataagagaacc-aaaactaccgcattgatatttgcctc 415
           || |||||||| |||||||| ||| | || ||||||||
Sbjct: 295 atcagagaacctaaaactactgcactaatttttgcctc 332

---

>emb|X66033.1|XLTRAF X.laevis mRNA for transcription factor
          Length = 891

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 336 tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||||||||||||| |||||||||||||| ||||| ||| ||||| ||||
Sbjct: 441 tgcagagtataacccaaagcgttttgctgctgttataatgaggatacgaga 491

---

>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 82/98 (83%), Gaps = 1/98 (1%)
 Strand = Plus / Minus

                                                                          
Query: 319    gctctccaggcacgcantgcagagtataaccccaagcgttttgctgcggttatcatgcgg 378
              ||||| || ||||| | ||| ||||||||||| ||||||||||| || ||||| ||||| 
Sbjct: 648475 gctctgcacgcacgtaatgccgagtataaccctaagcgttttgccgctgttattatgcgt 648416

                                                    
Query: 379    ataagagaacc-aaaactaccgcattgatatttgcctc 415
              || |||||||| |||||||| ||| | || ||||||||
Sbjct: 648415 atcagagaacctaaaactactgcactaatttttgcctc 648378

---

>gb|BC088819.1| Xenopus laevis hypothetical LOC503680, mRNA (cDNA clone MGC:84973
           IMAGE:6324598), complete cds
          Length = 1249

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 336 tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||||||||||||| |||||||||||||| ||||| ||| ||||| ||||
Sbjct: 547 tgcagagtataacccaaagcgttttgctgctgttataatgaggatacgaga 597

---

>ref|XM_623085.1| PREDICTED: Apis mellifera similar to TBP (LOC550692), mRNA
          Length = 1178

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 49/54 (90%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 358 tttgctgcggttatcatgcggataagagaaccaa-aactaccgcattgatattt 410
           |||||||| ||||| ||| ||||||||||||||| |||||| ||||||||||||
Sbjct: 750 tttgctgcagttattatgaggataagagaaccaagaactactgcattgatattt 803

---

>emb|BX816719.1|CNS0AD78 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH65ZB12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1156

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaa 392
           ||||||||||||||||||||||| || |||||| |||| ||||| |||||
Sbjct: 408 tataaccccaagcgttttgctgctgtaatcatgaggatcagagagccaaa 457

---

>gb|BT019657.1| Homo sapiens TATA box binding protein mRNA, complete cds
          Length = 1011

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 565 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 608

---

>gb|BT019656.1| Synthetic construct Homo sapiens TATA box binding protein mRNA,
           partial cds
          Length = 1011

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 565 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 608

---

>emb|CR618783.1| full-length cDNA clone CS0DC029YI14 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1714

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 725 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 768

---

>emb|CR612496.1| full-length cDNA clone CS0DI033YH14 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1809

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 815 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 858

---

>emb|CR590323.1| full-length cDNA clone CS0DI037YI01 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1819

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 810 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 853

---

>emb|CR456776.1| Homo sapiens full open reading frame cDNA clone RZPDo834F024D for
           gene TBP, TATA box binding protein; complete cds, incl.
           stopcodon
          Length = 1020

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 574 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 617

---

>ref|NM_003194.3| Homo sapiens TATA box binding protein (TBP), mRNA
          Length = 1867

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 806 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 849

---

>gb|AY158633.1| Passer domesticus TATA-box binding protein mRNA, partial cds
          Length = 504

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaacca 390
           ||||| ||||||||||||||||| ||||| ||| | ||||||||||||
Sbjct: 390 tataatcccaagcgttttgctgctgttattatgagaataagagaacca 437

---

>gb|M34960.1|HUMTFIIDA Homo sapiens transcription factor IID mRNA, complete cds
          Length = 1020

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 574 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 617

---

>gb|BC109053.1| Homo sapiens TATA box binding protein, mRNA (cDNA clone MGC:126054
           IMAGE:40032492), complete cds
          Length = 1393

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 764 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 807

---

>gb|BC109054.1| Homo sapiens TATA box binding protein, mRNA (cDNA clone MGC:126055
           IMAGE:40032493), complete cds
          Length = 1247

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 618 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 661

---

>gb|BC110341.1| Homo sapiens cDNA clone MGC:117320 IMAGE:5761426, complete cds
          Length = 1887

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 812 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 855

---

>emb|Z22828.1|HSTFIIDAA H.sapiens transcription factor TFIID mRNA
          Length = 920

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 812 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 855

---

>emb|X54993.1|HSTFIIDX H.sapiens TFIID mRNA
          Length = 1710

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 660 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 703

---

>gb|M55654.1|HUMTFIID Human TATA-binding protein mRNA, complete cds
          Length = 1876

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 815 tataatcccaagcggtttgctgcggtaatcatgaggataagaga 858

---

>dbj|D83135.2| Gallus gallus TBP gene, complete cds
          Length = 3358

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                   
Query: 352  aagcgttttgctgcggttatcatgcggataagagaacca 390
            |||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 1377 aagcgttttgctgctgttattatgaggataagagaacca 1415

---

>ref|NM_104427.2| Arabidopsis thaliana TBP2; DNA binding / RNA polymerase II
           transcription factor AT1G55520 (TBP2) transcript variant
           AT1G55520.1 mRNA, complete cds
          Length = 1205

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaa 392
           ||||||||||||||||| ||||| || |||||| |||| ||||| |||||
Sbjct: 420 tataaccccaagcgtttcgctgctgtaatcatgaggatcagagagccaaa 469

---

>ref|NM_179481.1| Arabidopsis thaliana TBP2; DNA binding / RNA polymerase II
           transcription factor AT1G55520 (TBP2) transcript variant
           AT1G55520.2 mRNA, complete cds
          Length = 1208

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaa 392
           ||||||||||||||||| ||||| || |||||| |||| ||||| |||||
Sbjct: 420 tataaccccaagcgtttcgctgctgtaatcatgaggatcagagagccaaa 469

---

>gb|AY376311.1| Gallus gallus proteasome subunit beta-type (PSMB1), TATA-binding
             protein (TBP), and programmed cell death 2 (PDCD2) genes,
             complete cds; and glyceronephosphate O-acyl-transferase
             (GNPAT) gene, partial cds
          Length = 39218

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 353   agcgttttgctgcggttatcatgcggataagagaacca 390
             ||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 21888 agcgttttgctgctgttattatgaggataagagaacca 21925

---

>gb|AY389957.1| Latimeria chalumnae TATA box binding protein (TBP)-associated
           factor mRNA, partial cds
          Length = 749

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 336 tgcagagtataaccccaagcgttttgctgc 365
           ||||||||||||||| ||||||||||||||
Sbjct: 349 tgcagagtataacccaaagcgttttgctgc 378

---

>gb|AY463626.1| Arabidopsis thaliana TBP2 (TBP2) mRNA, partial cds
          Length = 600

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaa 392
           ||||||||||||||||| ||||| || |||||| |||| ||||| |||||
Sbjct: 154 tataaccccaagcgtttcgctgctgtaatcatgaggatcagagagccaaa 203

---

>emb|X54995.1|ATTFIIDA A.thaliana (clone At-1) TFIID mRNA for transcription initiation
           factor II
          Length = 1193

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaa 392
           ||||||||||||||||| ||||| || |||||| |||| ||||| |||||
Sbjct: 408 tataaccccaagcgtttcgctgctgtaatcatgaggatcagagagccaaa 457

---

>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20,
             complete sequence
          Length = 139421

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 218   agccggtggatctgtccaagcacccctccggcatcgtccccacgctccag 267
             |||||||||||||   | ||||||||||||| ||||||||||| ||||||
Sbjct: 92802 agccggtggatctcgtcgagcacccctccgggatcgtccccaccctccag 92753



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 353   agcgttttgctgcggttatcatgcggataagagaaccaaa 392
             ||||||||||||| ||||||||| ||||||| || |||||
Sbjct: 91733 agcgttttgctgcagttatcatgaggataagggacccaaa 91694

---

>gb|BT006488.1| Arabidopsis thaliana At1g55520 gene, complete cds
          Length = 603

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaaccaaa 392
           ||||||||||||||||| ||||| || |||||| |||| ||||| |||||
Sbjct: 154 tataaccccaagcgtttcgctgctgtaatcatgaggatcagagagccaaa 203

---

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 218      agccggtggatctgtccaagcacccctccggcatcgtccccacgctccag 267
                |||||||||||||   | ||||||||||||| ||||||||||| ||||||
Sbjct: 14913024 agccggtggatctcgtcgagcacccctccgggatcgtccccaccctccag 14912975



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 353      agcgttttgctgcggttatcatgcggataagagaaccaaa 392
                ||||||||||||| ||||||||| ||||||| || |||||
Sbjct: 14911955 agcgttttgctgcagttatcatgaggataagggacccaaa 14911916

---

>dbj|AK111369.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A03, full
           insert sequence
          Length = 587

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 218 agccggtggatctgtccaagcacccctccggcatcgtccccacgctccag 267
           |||||||||||||   | ||||||||||||| ||||||||||| ||||||
Sbjct: 240 agccggtggatctcgtcgagcacccctccgggatcgtccccaccctccag 289

---

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 218      agccggtggatctgtccaagcacccctccggcatcgtccccacgctccag 267
                |||||||||||||   | ||||||||||||| ||||||||||| ||||||
Sbjct: 14921265 agccggtggatctcgtcgagcacccctccgggatcgtccccaccctccag 14921216



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 353      agcgttttgctgcggttatcatgcggataagagaaccaaa 392
                ||||||||||||| ||||||||| ||||||| || |||||
Sbjct: 14920196 agcgttttgctgcagttatcatgaggataagggacccaaa 14920157

---

>gb|AC155338.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH138P04, complete sequence
          Length = 137697

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 63/74 (85%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                         
Query: 343   tataaccccaagcgttttgctgcggttatcatgcggataagagaacc-aaaactaccgca 401
             |||||||| || ||||||||||| || |||||| ||||||| ||||| || || || || 
Sbjct: 73964 tataaccctaaacgttttgctgctgtgatcatgaggataagggaaccgaagaccacagcg 74023

                           
Query: 402   ttgatatttgcctc 415
             ||||||||||||||
Sbjct: 74024 ttgatatttgcctc 74037

---

>ref|XM_749515.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g10120)
           partial mRNA
          Length = 852

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 94/116 (81%), Gaps = 1/116 (0%)
 Strand = Plus / Plus

                                                                       
Query: 301 ttggacctcaaagctatagctctccaggcacgcantgcagagtataaccccaagcgtttt 360
           |||||||||||  |||| || || || || || | ||||||||| ||||| |||||||| 
Sbjct: 310 ttggacctcaagactatcgcgcttcatgcgcgaaatgcagagtacaacccaaagcgtttc 369

                                                                   
Query: 361 gctgcggttatcatgcggataagagaa-ccaaaactaccgcattgatatttgcctc 415
           || || || |||||||| ||  | ||| |||||||||||||  |||||||||||||
Sbjct: 370 gcggccgtgatcatgcgtatccgggaacccaaaactaccgcgctgatatttgcctc 425

---

>emb|BX824252.1|CNS0A5S4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH33ZD12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1283

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 349 cccaagcgttttgctgcggttatcatgcggataagagaacc 389
           |||||||||||||||||||| || ||| |||| ||||||||
Sbjct: 405 cccaagcgttttgctgcggtgataatgaggatgagagaacc 445

---

>ref|XM_594733.2| PREDICTED: Bos taurus similar to TATA-box binding protein (TATA-box
           factor) (TATA binding factor) (TATA sequence-binding
           protein) (Transcription initiation factor TFIID TBP
           subunit) (LOC516578), mRNA
          Length = 1153

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| ||||||||||||||||| || |||||| | ||||||||
Sbjct: 728 tataatcccaagcgttttgctgctgtaatcatgagaataagaga 771

---

>gb|BC113308.1| Bos taurus cDNA clone MGC:138100 IMAGE:8089033, complete cds
          Length = 1951

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagaga 386
           ||||| ||||||||||||||||| || |||||| | ||||||||
Sbjct: 892 tataatcccaagcgttttgctgctgtaatcatgagaataagaga 935

---

>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15
          Length = 83287

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 55/64 (85%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                         
Query: 353   agcgttttgctgcggttatcatgcggataagagaacc-aaaactaccgcattgatatttg 411
             |||||||||||||||| || ||| |||| |||||||| || ||||| ||||| ||||| |
Sbjct: 34730 agcgttttgctgcggtgataatgaggatcagagaaccgaagactacagcattaatattcg 34789

                 
Query: 412   cctc 415
             ||||
Sbjct: 34790 cctc 34793

---

>emb|AJ315564.1|RCA315564 Rhodobacter capsulatus pha1 gene, pha2 gene, phaC gene and ORFX
          Length = 4472

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 146  gccgggggccggggccagcggcgg 169
            ||||||||||||||||||||||||
Sbjct: 1349 gccgggggccggggccagcggcgg 1372

---

>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome
          Length = 2314078

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 104    accgcgggaaatcacgcccacgc 126
              |||||||||||||||||||||||
Sbjct: 911960 accgcgggaaatcacgcccacgc 911938

---

>ref|XM_426476.1| PREDICTED: Gallus gallus similar to DNA segment, Chr 14, ERATO Doi
            436, expressed (LOC428922), mRNA
          Length = 3003

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                   
Query: 336  tgcagagtataaccccaagcgttttgctgcggttatcatgcggataagagaacca 390
            ||||||||||||||| ||| | |||||||| || |||||| |||| || ||||||
Sbjct: 1167 tgcagagtataacccaaagaggtttgctgctgtgatcatgaggatcagggaacca 1221

---

>gb|AY389958.1| Protopterus dolloi TATA box binding protein (TBP)-associated factor
           mRNA, partial cds
          Length = 753

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 349 cccaagcgttttgctgcggttatcatgcggataagagaaccaa 391
           |||||||||||||| || ||||| ||| | |||||||||||||
Sbjct: 365 cccaagcgttttgcagctgttattatgagaataagagaaccaa 407

---

>ref|XM_501249.1| Yarrowia lipolytica CLIB122, YALI0B23056g predicted mRNA
          Length = 684

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 243 ctccggcatcgtccccacgctccagaatattgtgtcgacggtcaacctgga 293
           |||||| ||||||||||| || ||||| |||||  |||| |||||||||||
Sbjct: 141 ctccggtatcgtccccacactacagaacattgttgcgaccgtcaacctgga 191

---

>gb|AF069526.1|AF069526 Aplysia californica Shaw potassium channel Kv3.1a mRNA, complete cds
          Length = 1778

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 118  cgcccacgccaccgccccctcct 140
            |||||||||||||||||||||||
Sbjct: 1510 cgcccacgccaccgccccctcct 1488

---

>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 243     ctccggcatcgtccccacgctccagaatattgtgtcgacggtcaacctgga 293
               |||||| ||||||||||| || ||||| |||||  |||| |||||||||||
Sbjct: 3019307 ctccggtatcgtccccacactacagaacattgttgcgaccgtcaacctgga 3019357

---

>ref|XM_470232.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1956

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 124 cgccaccgccccctcctccctc 145
           ||||||||||||||||||||||
Sbjct: 45  cgccaccgccccctcctccctc 66

---

>ref|XM_364033.1| Magnaporthe grisea 70-15 hypothetical protein (MG08878.4) partial
           cds
          Length = 768

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 340 gagtataaccccaagcgttttgctgcggttatcatgcg 377
           ||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 322 gagtacaaccctaagcgtttcgctgctgttatcatgcg 359

---

>ref|XM_753448.1| Ustilago maydis 521 transcription initiation factor TFIID-1
           (UM02394.1) partial mRNA
          Length = 570

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 340 gagtataaccccaagcgttttgctgcggttatcatgcg 377
           ||||||||||| ||||||||||| || || ||||||||
Sbjct: 124 gagtataaccctaagcgttttgccgcagtcatcatgcg 161

---

>gb|AY168630.1| Eptatretus stoutii TATA-binding protein (TBP) mRNA, complete cds
          Length = 2078

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 331 cgcantgcagagtataaccccaagcgttttgctgcggttat 371
           |||| ||| ||||| ||||||||||| |||||||| |||||
Sbjct: 716 cgcaatgctgagtacaaccccaagcgatttgctgcagttat 756

---

>emb|CR731077.1|CNS0GR1M Tetraodon nigroviridis full-length cDNA
          Length = 1192

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 336 tgcagagtataaccccaagcgttttgctgc 365
           |||||||||||| || ||||||||||||||
Sbjct: 625 tgcagagtataatccaaagcgttttgctgc 654

---

>emb|AL031259.1|HS191N21 Human DNA sequence from clone RP1-191N21 on chromosome 6q27 Contains a
             7 transmembrane receptor (rhodopsin family) (olfactory
             receptor like) pseudogene, the PDCD2 gene for programmed
             cell death 2 (RP8 homolog), the TBP gene for TATA box
             binding protein, the PSMB1 gene for proteasome subunit HC5
             and two CpG islands, complete sequence
          Length = 113820

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 353   agcgttttgctgcggttatcatgcggataagaga 386
             |||| ||||||||||| |||||| ||||||||||
Sbjct: 82026 agcggtttgctgcggtaatcatgaggataagaga 81993

---

>dbj|AB035828.1| Coturnix coturnix japonica DNA, microsatellite GUJ0018 sequence
          Length = 245

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 180 gggccggtggatggcggaggcggcgc 205
           |||||||||| |||||||||||||||
Sbjct: 26  gggccggtggctggcggaggcggcgc 51

---

>emb|AL113773.1|CNS01B4L Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 352 aagcgttttgctgcggttatcatgcg 377
           |||||||| |||||||||||||||||
Sbjct: 57  aagcgtttcgctgcggttatcatgcg 82

---

>emb|AL111132.1|CNS01939 Botrytis cinerea strain T4 cDNA library
          Length = 660

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 352 aagcgttttgctgcggttatcatgcg 377
           |||||||| |||||||||||||||||
Sbjct: 57  aagcgtttcgctgcggttatcatgcg 82

---

>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0050N02, complete sequence
          Length = 133373

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 124   cgccaccgccccctcctccctc 145
             ||||||||||||||||||||||
Sbjct: 42289 cgccaccgccccctcctccctc 42268

---

>emb|Z96662.1|HS6QT056 H.sapiens telomeric DNA sequence, clone 6QTEL056, read
           6QTELOO056.seq
          Length = 413

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 353 agcgttttgctgcggttatcatgcggataagaga 386
           |||| ||||||||||| |||||| ||||||||||
Sbjct: 121 agcggtttgctgcggtaatcatgaggataagaga 154

---

>dbj|AK068803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161F12, full
           insert sequence
          Length = 2357

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 124 cgccaccgccccctcctccctc 145
           ||||||||||||||||||||||
Sbjct: 227 cgccaccgccccctcctccctc 248

---

>emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa0030N06 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146444

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 115   tcacgcccacgccaccgccccctcctccctcgcc 148
             ||||||||||||| || | |||||||||||||||
Sbjct: 93926 tcacgcccacgccgcctcgccctcctccctcgcc 93959

---

>gb|L13731.1|ONGTBP Onchocerca volvulus TATA box-binding protein gene, complete cds
          Length = 5072

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 336  tgcagagtataaccccaagcgttttgctgcggttatcatgcg 377
            |||||| ||||| || |||||||||||||| ||||| |||||
Sbjct: 2407 tgcagaatataatccaaagcgttttgctgctgttataatgcg 2448

---

>gb|AY425965.1| Pongo pygmaeus lymphocryptovirus 1 DNA polymerase (dpol) gene,
           partial cds
          Length = 487

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 cgccgggggccggggccagcg 165
           |||||||||||||||||||||
Sbjct: 446 cgccgggggccggggccagcg 426

---

>gb|AY191465.1| Pongine herpesvirus 2 DNA polymerase-like gene, partial sequence
          Length = 207

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 cgccgggggccggggccagcg 165
           |||||||||||||||||||||
Sbjct: 159 cgccgggggccggggccagcg 139

---

>gb|AY129398.1| Pongo pygmaeus lymphocryptovirus 1 DNA polymerase gene, partial cds
          Length = 456

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 cgccgggggccggggccagcg 165
           |||||||||||||||||||||
Sbjct: 417 cgccgggggccggggccagcg 397

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 181     ggccggtggatggcggaggcg 201
               |||||||||||||||||||||
Sbjct: 2607953 ggccggtggatggcggaggcg 2607973

---

>gb|AC079378.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-7L11,
             complete sequence
          Length = 189137

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   cgccaccgccccctcctccct 144
             |||||||||||||||||||||
Sbjct: 56171 cgccaccgccccctcctccct 56191

---

>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0434B04
          Length = 167029

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   ggccggtggatggcggaggcg 201
             |||||||||||||||||||||
Sbjct: 57728 ggccggtggatggcggaggcg 57748

---

>gb|L22538.1|SPFDNABIND Spodoptera frugiperda DNA binding protein mRNA, complete cds
          Length = 1201

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 58/69 (84%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                       
Query: 343 tataaccccaagcgttttgctgcggttatcatgcggataagagaacc-aaaactaccgca 401
           |||||||| ||| | |||||||| ||||| ||| | ||||||||||| | |||||| |||
Sbjct: 703 tataacccaaagagatttgctgcagttattatgagaataagagaacctagaactacagca 762

                    
Query: 402 ttgatattt 410
            ||||||||
Sbjct: 763 ctgatattt 771

---

>dbj|D28600.1|CHKMAFBBZI Chicken gene for bZip nuclear protein MafB, complete cds
          Length = 5087

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 148  cgggggccggggccagcggcggccg 172
            |||||||||||||| ||||||||||
Sbjct: 1278 cgggggccggggccggcggcggccg 1254

---

>dbj|AB051823.1| Ephydatia fluviatilis TBP mRNA for TATA-box binding protein,
           complete cds
          Length = 984

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 65/80 (81%)
 Strand = Plus / Plus

                                                                       
Query: 298 aaattggacctcaaagctatagctctccaggcacgcantgcagagtataaccccaagcgt 357
           |||||||||||||||   ||||| || || ||| | |  |||||||| ||||| ||||| 
Sbjct: 388 aaattggacctcaaaaagatagcccttcatgcaagaaacgcagagtacaaccctaagcga 447

                               
Query: 358 tttgctgcggttatcatgcg 377
           ||||||||||| || |||||
Sbjct: 448 tttgctgcggtcattatgcg 467

---

>ref|XM_482967.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3226

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 ggtggatggcggaggcggcg 204
           ||||||||||||||||||||
Sbjct: 193 ggtggatggcggaggcggcg 212

---

>ref|XM_482224.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 279

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 ccaccgccccctcctccctc 145
           ||||||||||||||||||||
Sbjct: 25  ccaccgccccctcctccctc 6

---

>gb|AY753184.1| Xenopus laevis TATA-binding protein 2 mRNA, complete cds
          Length = 1149

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 358 tttgctgcggttatcatgcggataagagaacc 389
           |||||||| || ||||||||||| ||||||||
Sbjct: 616 tttgctgcagtaatcatgcggatcagagaacc 647

---

>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    cgccaccgccccctcctccctcgc 147
              |||||||| |||||||||||||||
Sbjct: 138661 cgccaccgtcccctcctccctcgc 138638

---

>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01,
             complete sequence
          Length = 146432

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 181   ggccggtggatggcggaggcggcg 204
             |||||| |||||||||||||||||
Sbjct: 79159 ggccggaggatggcggaggcggcg 79136

---

>emb|X63133.1|ACTFIID A.castellanii mRNA for TFIID
          Length = 1050

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 340 gagtataaccccaagcgttttgctgcggttatcatg 375
           ||||| ||||| |||||||||||||| || ||||||
Sbjct: 375 gagtacaacccgaagcgttttgctgccgtcatcatg 410

---

>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7
          Length = 348764

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    atcacgcccacgccaccgcc 133
              ||||||||||||||||||||
Sbjct: 306752 atcacgcccacgccaccgcc 306771

---

>emb|AL669990.1|NCB8J24 Neurospora crassa DNA linkage group II BAC clone B8J24
          Length = 77612

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gaccagaccagaccaaaccc 22
             ||||||||||||||||||||
Sbjct: 52303 gaccagaccagaccaaaccc 52322

---

>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome
          Length = 156789

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    gcggaggcggcgctggaggg 212
              ||||||||||||||||||||
Sbjct: 151849 gcggaggcggcgctggaggg 151830



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    gcggaggcggcgctggaggg 212
              ||||||||||||||||||||
Sbjct: 130575 gcggaggcggcgctggaggg 130594

---

>gb|AC103702.3| Homo sapiens chromosome 17, clone RP11-357H14, complete sequence
          Length = 187386

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   cgggggccggggccagcggc 167
             ||||||||||||||||||||
Sbjct: 64096 cgggggccggggccagcggc 64115

---

>gb|AC008737.11| Homo sapiens chromosome 19 clone CTD-2538G9, complete sequence
          Length = 248281

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      cgaccagaccagaccaaacc 21
              ||||||||||||||||||||
Sbjct: 191473 cgaccagaccagaccaaacc 191454

---

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 160     ccagcggcggccgtttccgggggc 183
               ||||||||| ||||||||||||||
Sbjct: 1416738 ccagcggcgaccgtttccgggggc 1416761

---

>ref|NM_170536.2| Drosophila melanogaster discs overgrown CG2048-RB, transcript variant
            B (dco), mRNA
          Length = 3064

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  cccacgccaccgccccctcc 139
            ||||||||||||||||||||
Sbjct: 1705 cccacgccaccgccccctcc 1686

---

>ref|NM_170535.1| Drosophila melanogaster discs overgrown CG2048-RA, transcript variant
            A (dco), mRNA
          Length = 2967

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  cccacgccaccgccccctcc 139
            ||||||||||||||||||||
Sbjct: 1608 cccacgccaccgccccctcc 1589

---

>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     tctctataaaactcggcgga 86
              ||||||||||||||||||||
Sbjct: 908422 tctctataaaactcggcgga 908403

---

>ref|NM_079863.2| Drosophila melanogaster discs overgrown CG2048-RC, transcript variant
            C (dco), mRNA
          Length = 3233

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  cccacgccaccgccccctcc 139
            ||||||||||||||||||||
Sbjct: 1874 cccacgccaccgccccctcc 1855

---

>gb|AE009866.1|AE009866 Pyrobaculum aerophilum strain IM2 section 121 of 201 of the complete
            genome
          Length = 12042

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  gccccctcctccctcgccgg 150
            ||||||||||||||||||||
Sbjct: 7314 gccccctcctccctcgccgg 7333

---

>gb|M93340.2|ACATFIIDB Acanthamoeba castellanii transcription factor (TFIID) gene, complete
            cds
          Length = 2507

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 340  gagtataaccccaagcgttttgctgcggttatcatg 375
            ||||| ||||| |||||||||||||| || ||||||
Sbjct: 1538 gagtacaacccgaagcgttttgctgccgtcatcatg 1573

---

>gb|AC008680.5|AC008680 Homo sapiens chromosome 5 clone CTB-53I9, complete sequence
          Length = 229045

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 129    ccgccccctcctccctcgccgggg 152
              |||||| |||||||||||||||||
Sbjct: 140758 ccgccctctcctccctcgccgggg 140781

---

>tpg|BK001774.1| TPA: TPA_exp: Xenopus laevis TBP-related factor 3 (TRF3) mRNA,
           complete cds
          Length = 963

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 358 tttgctgcggttatcatgcggataagagaacc 389
           |||||||| || ||||||||||| ||||||||
Sbjct: 532 tttgctgcagtaatcatgcggatcagagaacc 563

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 185      ggtggatggcggaggcggcg 204
                ||||||||||||||||||||
Sbjct: 23593698 ggtggatggcggaggcggcg 23593679



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 126      ccaccgccccctcctccctc 145
                ||||||||||||||||||||
Sbjct: 18810626 ccaccgccccctcctccctc 18810645

---

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 123      acgccaccgccccctcctcc 142
                ||||||||||||||||||||
Sbjct: 16081532 acgccaccgccccctcctcc 16081513

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 181      ggccggtggatggcggaggcggcg 204
                |||||| |||||||||||||||||
Sbjct: 23147384 ggccggaggatggcggaggcggcg 23147361

---

>gb|AC004847.3|AC004847 Homo sapiens clone RP4-647J21, complete sequence
          Length = 122280

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   ccaccgccccctcctccctc 145
             ||||||||||||||||||||
Sbjct: 79492 ccaccgccccctcctccctc 79473

---

>gb|AC008220.5|AC008220 Drosophila melanogaster, chromosome 3R, region 100B-100C, BAC clone
             BACR11C03, complete sequence
          Length = 186549

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   cccacgccaccgccccctcc 139
             ||||||||||||||||||||
Sbjct: 33194 cccacgccaccgccccctcc 33213

---

>gb|AC007975.7|AC007975 Drosophila melanogaster, chromosome 3R, region 100A-100B, BAC clone
              BACR06P08, complete sequence
          Length = 180630

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    cccacgccaccgccccctcc 139
              ||||||||||||||||||||
Sbjct: 155241 cccacgccaccgccccctcc 155260

---

>gb|AC009789.21|AC009789 Homo sapiens chromosome 17, clone RP11-361K8, complete sequence
          Length = 168215

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   cgggggccggggccagcggc 167
             ||||||||||||||||||||
Sbjct: 67959 cgggggccggggccagcggc 67978

---

>gb|M87493.1|ACATFIIDX Acanthamoeba castellanii transcription factor TFIID mRNA, complete
           cds
          Length = 1050

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 340 gagtataaccccaagcgttttgctgcggttatcatg 375
           ||||| ||||| |||||||||||||| || ||||||
Sbjct: 375 gagtacaacccgaagcgttttgctgccgtcatcatg 410

---

>gb|AF245690.1|AF245690 Streptomyces verticillus putative N-acetyl-glucosamine transferase
            gene, partial cds; and putative N-acetyl-glucosamine
            2-epimerase and hypothetical protein genes, complete cds
          Length = 5222

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  ccggtggatggcggaggcgg 202
            ||||||||||||||||||||
Sbjct: 3759 ccggtggatggcggaggcgg 3740

---

>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0038F09
          Length = 166568

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   acgccaccgccccctcctcc 142
             ||||||||||||||||||||
Sbjct: 51865 acgccaccgccccctcctcc 51846

---

>dbj|AP004643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1113_A10
          Length = 160089

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  ggtggatggcggaggcggcg 204
            ||||||||||||||||||||
Sbjct: 1294 ggtggatggcggaggcggcg 1275

---

>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1666_A04
          Length = 90097

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   ggtggatggcggaggcggcg 204
             ||||||||||||||||||||
Sbjct: 73473 ggtggatggcggaggcggcg 73454

---

>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1123_G08
          Length = 146944

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    ccaccgccccctcctccctc 145
              ||||||||||||||||||||
Sbjct: 114075 ccaccgccccctcctccctc 114094

---

>emb|AJ243806.1|CRE243806 Chlamydomonas reinhardtii dhc1 gene for 1-alpha dynein heavy chain
          Length = 23204

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   ggcggaggcggcgctggagg 211
             ||||||||||||||||||||
Sbjct: 17111 ggcggaggcggcgctggagg 17130

---

>dbj|AK099704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075H22, full
           insert sequence
          Length = 3225

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 ggtggatggcggaggcggcg 204
           ||||||||||||||||||||
Sbjct: 193 ggtggatggcggaggcggcg 212

---

>gb|AF192484.1|AF192484 Drosophila melanogaster discs overgrown (dco) gene, complete cds
          Length = 9065

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  cccacgccaccgccccctcc 139
            ||||||||||||||||||||
Sbjct: 5442 cccacgccaccgccccctcc 5423

---

>dbj|AK066733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074I15, full
           insert sequence
          Length = 3961

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 181 ggccggtggatggcggaggcggcg 204
           |||||| |||||||||||||||||
Sbjct: 181 ggccggaggatggcggaggcggcg 158

---

>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 195     ggaggcggcgctggagggga 214
               ||||||||||||||||||||
Sbjct: 1499900 ggaggcggcgctggagggga 1499919

---

>gb|AE003776.2| Drosophila melanogaster chromosome 3R, section 114 of 118 of the complete
              sequence
          Length = 225764

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    cccacgccaccgccccctcc 139
              ||||||||||||||||||||
Sbjct: 149867 cccacgccaccgccccctcc 149886

---

>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence
          Length = 405672

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      gaccagaccagaccaaaccc 22
              ||||||||||||||||||||
Sbjct: 165775 gaccagaccagaccaaaccc 165756

---

>gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence
          Length = 323584

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      gaccagaccagaccaaaccc 22
              ||||||||||||||||||||
Sbjct: 153868 gaccagaccagaccaaaccc 153849

---

>gb|AF055583.1|AF055583 Drosophila melanogaster casein kinase I homolog (dbt) mRNA, complete
            cds
          Length = 1521

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  cccacgccaccgccccctcc 139
            ||||||||||||||||||||
Sbjct: 1376 cccacgccaccgccccctcc 1357

---

>gb|AF132558.1| Drosophila melanogaster double-time (dbt) mRNA, complete cds
          Length = 3239

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  cccacgccaccgccccctcc 139
            ||||||||||||||||||||
Sbjct: 1874 cccacgccaccgccccctcc 1855

---

>dbj|AK074135.1| Homo sapiens mRNA for FLJ00208 protein
          Length = 4362

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  ccaccgccccctcctccctc 145
            ||||||||||||||||||||
Sbjct: 3838 ccaccgccccctcctccctc 3819


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,537,030
Number of Sequences: 3902068
Number of extensions: 2537030
Number of successful extensions: 56790
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55717
Number of HSP's gapped (non-prelim): 1058
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---