ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast43d10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550012.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1990 Score = 319 bits (161), Expect = 3e-84 Identities = 239/265 (90%) Strand = Plus / Minus Query: 7 agggaccacgccaacttcgcctcggcgaggcaggagctgtaccagtgggagtccgtggcg 66 |||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct: 782 agggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtgtgggagtccgtggcc 723 Query: 67 aggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccgtacctgtacacgctc 126 | |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 722 aagtcggctcggaacgcgctcggcatgcggtacaggctgctcccttacctgtacacgctc 663 Query: 127 aactaccaggcgcacctcaccggcgctcccgtggcgcggccgctcttcttctcgttcccg 186 |||||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||| Sbjct: 662 aactaccaggcgcatctcaccggcgctccggtggcgcggccggtgttcttctcgttcccg 603 Query: 187 gacttcgcgccgtgctacggcgtgagcaaccagttcctactcggcgccggcgtcatggtg 246 |||||| ||||||||||||| |||||| |||| ||| |||||||| ||||||||||| Sbjct: 602 gacttcacgccgtgctacgggctgagcacgcagtacctgctcggcgcgagcgtcatggtg 543 Query: 247 tccccggtcctcgagcagggcgcca 271 || ||||| |||||||||||||||| Sbjct: 542 tcgccggtgctcgagcagggcgcca 518
>ref|NM_184232.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3193 Score = 319 bits (161), Expect = 3e-84 Identities = 239/265 (90%) Strand = Plus / Plus Query: 7 agggaccacgccaacttcgcctcggcgaggcaggagctgtaccagtgggagtccgtggcg 66 |||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct: 2126 agggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtgtgggagtccgtggcc 2185 Query: 67 aggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccgtacctgtacacgctc 126 | |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 2186 aagtcggctcggaacgcgctcggcatgcggtacaggctgctcccttacctgtacacgctc 2245 Query: 127 aactaccaggcgcacctcaccggcgctcccgtggcgcggccgctcttcttctcgttcccg 186 |||||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||| Sbjct: 2246 aactaccaggcgcatctcaccggcgctccggtggcgcggccggtgttcttctcgttcccg 2305 Query: 187 gacttcgcgccgtgctacggcgtgagcaaccagttcctactcggcgccggcgtcatggtg 246 |||||| ||||||||||||| |||||| |||| ||| |||||||| ||||||||||| Sbjct: 2306 gacttcacgccgtgctacgggctgagcacgcagtacctgctcggcgcgagcgtcatggtg 2365 Query: 247 tccccggtcctcgagcagggcgcca 271 || ||||| |||||||||||||||| Sbjct: 2366 tcgccggtgctcgagcagggcgcca 2390
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 319 bits (161), Expect = 3e-84 Identities = 239/265 (90%) Strand = Plus / Plus Query: 7 agggaccacgccaacttcgcctcggcgaggcaggagctgtaccagtgggagtccgtggcg 66 |||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct: 1700731 agggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtgtgggagtccgtggcc 1700790 Query: 67 aggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccgtacctgtacacgctc 126 | |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 1700791 aagtcggctcggaacgcgctcggcatgcggtacaggctgctcccttacctgtacacgctc 1700850 Query: 127 aactaccaggcgcacctcaccggcgctcccgtggcgcggccgctcttcttctcgttcccg 186 |||||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||| Sbjct: 1700851 aactaccaggcgcatctcaccggcgctccggtggcgcggccggtgttcttctcgttcccg 1700910 Query: 187 gacttcgcgccgtgctacggcgtgagcaaccagttcctactcggcgccggcgtcatggtg 246 |||||| ||||||||||||| |||||| |||| ||| |||||||| ||||||||||| Sbjct: 1700911 gacttcacgccgtgctacgggctgagcacgcagtacctgctcggcgcgagcgtcatggtg 1700970 Query: 247 tccccggtcctcgagcagggcgcca 271 || ||||| |||||||||||||||| Sbjct: 1700971 tcgccggtgctcgagcagggcgcca 1700995
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 319 bits (161), Expect = 3e-84 Identities = 239/265 (90%) Strand = Plus / Plus Query: 7 agggaccacgccaacttcgcctcggcgaggcaggagctgtaccagtgggagtccgtggcg 66 |||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct: 43074 agggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtgtgggagtccgtggcc 43133 Query: 67 aggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccgtacctgtacacgctc 126 | |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 43134 aagtcggctcggaacgcgctcggcatgcggtacaggctgctcccttacctgtacacgctc 43193 Query: 127 aactaccaggcgcacctcaccggcgctcccgtggcgcggccgctcttcttctcgttcccg 186 |||||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||| Sbjct: 43194 aactaccaggcgcatctcaccggcgctccggtggcgcggccggtgttcttctcgttcccg 43253 Query: 187 gacttcgcgccgtgctacggcgtgagcaaccagttcctactcggcgccggcgtcatggtg 246 |||||| ||||||||||||| |||||| |||| ||| |||||||| ||||||||||| Sbjct: 43254 gacttcacgccgtgctacgggctgagcacgcagtacctgctcggcgcgagcgtcatggtg 43313 Query: 247 tccccggtcctcgagcagggcgcca 271 || ||||| |||||||||||||||| Sbjct: 43314 tcgccggtgctcgagcagggcgcca 43338
>dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B18, full insert sequence Length = 3486 Score = 319 bits (161), Expect = 3e-84 Identities = 239/265 (90%) Strand = Plus / Plus Query: 7 agggaccacgccaacttcgcctcggcgaggcaggagctgtaccagtgggagtccgtggcg 66 |||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct: 2127 agggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtgtgggagtccgtggcc 2186 Query: 67 aggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccgtacctgtacacgctc 126 | |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 2187 aagtcggctcggaacgcgctcggcatgcggtacaggctgctcccttacctgtacacgctc 2246 Query: 127 aactaccaggcgcacctcaccggcgctcccgtggcgcggccgctcttcttctcgttcccg 186 |||||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||| Sbjct: 2247 aactaccaggcgcatctcaccggcgctccggtggcgcggccggtgttcttctcgttcccg 2306 Query: 187 gacttcgcgccgtgctacggcgtgagcaaccagttcctactcggcgccggcgtcatggtg 246 |||||| ||||||||||||| |||||| |||| ||| |||||||| ||||||||||| Sbjct: 2307 gacttcacgccgtgctacgggctgagcacgcagtacctgctcggcgcgagcgtcatggtg 2366 Query: 247 tccccggtcctcgagcagggcgcca 271 || ||||| |||||||||||||||| Sbjct: 2367 tcgccggtgctcgagcagggcgcca 2391
>dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A04, full insert sequence Length = 3193 Score = 319 bits (161), Expect = 3e-84 Identities = 239/265 (90%) Strand = Plus / Plus Query: 7 agggaccacgccaacttcgcctcggcgaggcaggagctgtaccagtgggagtccgtggcg 66 |||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct: 2126 agggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtgtgggagtccgtggcc 2185 Query: 67 aggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccgtacctgtacacgctc 126 | |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 2186 aagtcggctcggaacgcgctcggcatgcggtacaggctgctcccttacctgtacacgctc 2245 Query: 127 aactaccaggcgcacctcaccggcgctcccgtggcgcggccgctcttcttctcgttcccg 186 |||||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||| Sbjct: 2246 aactaccaggcgcatctcaccggcgctccggtggcgcggccggtgttcttctcgttcccg 2305 Query: 187 gacttcgcgccgtgctacggcgtgagcaaccagttcctactcggcgccggcgtcatggtg 246 |||||| ||||||||||||| |||||| |||| ||| |||||||| ||||||||||| Sbjct: 2306 gacttcacgccgtgctacgggctgagcacgcagtacctgctcggcgcgagcgtcatggtg 2365 Query: 247 tccccggtcctcgagcagggcgcca 271 || ||||| |||||||||||||||| Sbjct: 2366 tcgccggtgctcgagcagggcgcca 2390
>dbj|AK110956.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-A07, full insert sequence Length = 1990 Score = 311 bits (157), Expect = 6e-82 Identities = 238/265 (89%) Strand = Plus / Minus Query: 7 agggaccacgccaacttcgcctcggcgaggcaggagctgtaccagtgggagtccgtggcg 66 |||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct: 782 agggaccatgccaacttcgcgtcgccgaggcaggagctgtatgtgtgggagtccgtggcc 723 Query: 67 aggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccgtacctgtacacgctc 126 | |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 722 aagtcggctcggaacgcgctcggcatgcggtacaggctgctcccttacctgtacacgctc 663 Query: 127 aactaccaggcgcacctcaccggcgctcccgtggcgcggccgctcttcttctcgttcccg 186 |||||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||| Sbjct: 662 aactaccaggcgcatctcaccggcgctccggtggcgcggccggtgttcttctcgttcccg 603 Query: 187 gacttcgcgccgtgctacggcgtgagcaaccagttcctactcggcgccggcgtcatggtg 246 |||||| ||||||||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct: 602 gacttcacgccgtgctacgggctgagcacgcagtacctgttcggcgcgagcgtcatggtg 543 Query: 247 tccccggtcctcgagcagggcgcca 271 || ||||| |||||||||||||||| Sbjct: 542 tcgccggtgctcgagcagggcgcca 518
>gb|AY109891.1| Zea mays CL53767_1 mRNA sequence Length = 812 Score = 153 bits (77), Expect = 3e-34 Identities = 122/137 (89%) Strand = Plus / Plus Query: 7 agggaccacgccaacttcgcctcggcgaggcaggagctgtaccagtgggagtccgtggcg 66 |||||||| ||||||||||| || |||||||||||||||| ||||| ||||||||| Sbjct: 375 agggaccatgccaacttcgcgtcaccgaggcaggagctgtatgtctgggactccgtggcg 434 Query: 67 aggtcggcgcggaacgcgctcggcatgcggtacaggatgctcccgtacctgtacacgctc 126 | ||| || ||||||||||||||||||||||||| | ||||||| ||||||||||||||| Sbjct: 435 aagtctgctcggaacgcgctcggcatgcggtacaagctgctcccctacctgtacacgctc 494 Query: 127 aactaccaggcgcacct 143 ||||||||||||||||| Sbjct: 495 aactaccaggcgcacct 511 Score = 119 bits (60), Expect = 5e-24 Identities = 90/100 (90%) Strand = Plus / Plus Query: 172 ttcttctcgttcccggacttcgcgccgtgctacggcgtgagcaaccagttcctactcggc 231 |||||||| ||||| |||||| ||||||||||||| |||||| |||||||| ||||| Sbjct: 540 ttcttctccttccccgacttcacgccgtgctacgggctgagcacgcagttcctgctcggt 599 Query: 232 gccggcgtcatggtgtccccggtcctcgagcagggcgcca 271 ||||||||||||||||||||||||||||||||||||||| Sbjct: 600 cccggcgtcatggtgtccccggtcctcgagcagggcgcca 639
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 135 bits (68), Expect = 8e-29 Identities = 122/140 (87%) Strand = Plus / Minus Query: 40 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 99 |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 27662755 gagctgtacctgtgggagtcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 27662696 Query: 100 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 159 || ||||||| ||| |||||||||||| ||| |||||||| ||||||||| ||| | Sbjct: 27662695 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccaccggcgcgcccatc 27662636 Query: 160 gcgcggccgctcttcttctc 179 |||||||||||||||||||| Sbjct: 27662635 gcgcggccgctcttcttctc 27662616 Score = 119 bits (60), Expect = 5e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 40 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 99 |||||||||| |||||| || ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 27721282 gagctgtacctgtgggaatcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 27721341 Query: 100 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 159 || ||||||| ||| |||||||||||| ||| |||||||| ||| ||||| ||| | Sbjct: 27721342 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccacgggcgcgcccatc 27721401 Query: 160 gcgcggccgctcttcttctc 179 |||||||||||||||||||| Sbjct: 27721402 gcgcggccgctcttcttctc 27721421 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gagtccgtggcgaggtcggcg 75 ||||||||||||||||||||| Sbjct: 15172657 gagtccgtggcgaggtcggcg 15172677 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gagtccgtggcgaggtcggc 74 |||||||||||||||||||| Sbjct: 15172601 gagtccgtggcgaggtcggc 15172620
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1153E06 Length = 174588 Score = 135 bits (68), Expect = 8e-29 Identities = 122/140 (87%) Strand = Plus / Minus Query: 40 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 99 |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 12010 gagctgtacctgtgggagtcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 11951 Query: 100 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 159 || ||||||| ||| |||||||||||| ||| |||||||| ||||||||| ||| | Sbjct: 11950 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccaccggcgcgcccatc 11891 Query: 160 gcgcggccgctcttcttctc 179 |||||||||||||||||||| Sbjct: 11890 gcgcggccgctcttcttctc 11871 Score = 119 bits (60), Expect = 5e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 40 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 99 |||||||||| |||||| || ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 70537 gagctgtacctgtgggaatcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 70596 Query: 100 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 159 || ||||||| ||| |||||||||||| ||| |||||||| ||| ||||| ||| | Sbjct: 70597 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccacgggcgcgcccatc 70656 Query: 160 gcgcggccgctcttcttctc 179 |||||||||||||||||||| Sbjct: 70657 gcgcggccgctcttcttctc 70676
>dbj|AK119824.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D07, full insert sequence Length = 2829 Score = 135 bits (68), Expect = 8e-29 Identities = 122/140 (87%) Strand = Plus / Plus Query: 40 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 99 |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 1900 gagctgtacctgtgggagtcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 1959 Query: 100 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 159 || ||||||| ||| |||||||||||| ||| |||||||| ||||||||| ||| | Sbjct: 1960 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccaccggcgcgcccatc 2019 Query: 160 gcgcggccgctcttcttctc 179 |||||||||||||||||||| Sbjct: 2020 gcgcggccgctcttcttctc 2039
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710B08 Length = 186991 Score = 119 bits (60), Expect = 5e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 40 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 99 |||||||||| |||||| || ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 23791 gagctgtacctgtgggaatcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 23850 Query: 100 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 159 || ||||||| ||| |||||||||||| ||| |||||||| ||| ||||| ||| | Sbjct: 23851 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccacgggcgcgcccatc 23910 Query: 160 gcgcggccgctcttcttctc 179 |||||||||||||||||||| Sbjct: 23911 gcgcggccgctcttcttctc 23930
>dbj|AK121588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037N10, full insert sequence Length = 2804 Score = 119 bits (60), Expect = 5e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 40 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 99 |||||||||| |||||| || ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 1878 gagctgtacctgtgggaatcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 1937 Query: 100 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 159 || ||||||| ||| |||||||||||| ||| |||||||| ||| ||||| ||| | Sbjct: 1938 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccacgggcgcgcccatc 1997 Query: 160 gcgcggccgctcttcttctc 179 |||||||||||||||||||| Sbjct: 1998 gcgcggccgctcttcttctc 2017
>dbj|AK105449.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B12, full insert sequence Length = 2873 Score = 119 bits (60), Expect = 5e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 40 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 99 |||||||||| |||||| || ||||||||||||||| |||| ||||||||| |||| ||| Sbjct: 1946 gagctgtacctgtgggaatcggtggcgaggtcggcgaggaaggcgctcggcctgcgctac 2005 Query: 100 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 159 || ||||||| ||| |||||||||||| ||| |||||||| ||| ||||| ||| | Sbjct: 2006 cggctgctcccctacttgtacacgctcatgtacgaggcgcacaccacgggcgcgcccatc 2065 Query: 160 gcgcggccgctcttcttctc 179 |||||||||||||||||||| Sbjct: 2066 gcgcggccgctcttcttctc 2085
>gb|BT019289.1| Zea mays clone Contig962.F mRNA sequence Length = 1946 Score = 79.8 bits (40), Expect = 4e-12 Identities = 115/140 (82%) Strand = Plus / Minus Query: 40 gagctgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtac 99 |||||||||| ||||||| |||||| |||||||| |||| |||||||| |||| ||| Sbjct: 942 gagctgtacctgtgggagctggtggcgcggtcggcgaggaaggcgctcgggctgcgctac 883 Query: 100 aggatgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtg 159 || |||| |||||| |||||||||| | ||| |||||||| ||| || || ||| | Sbjct: 882 cggctgcttccgtacatgtacacgctgatgtacgaggcgcacaccacgggagcgcccatc 823 Query: 160 gcgcggccgctcttcttctc 179 |||||||||||||||||||| Sbjct: 822 gcgcggccgctcttcttctc 803
>gb|AF118226.1|AF118226 Hordeum vulgare high pI alpha-glucosidase (AGL97) gene, complete cds Length = 7113 Score = 56.0 bits (28), Expect = 6e-05 Identities = 109/136 (80%) Strand = Plus / Plus Query: 44 tgtaccagtgggagtccgtggcgaggtcggcgcggaacgcgctcggcatgcggtacagga 103 |||||| |||| ||| |||||| ||||||| |||| |||||||| | |||||| | Sbjct: 6287 tgtacctgtggccgtcggtggcggcgtcggcgaggaaggcgctcgggctccggtaccagc 6346 Query: 104 tgctcccgtacctgtacacgctcaactaccaggcgcacctcaccggcgctcccgtggcgc 163 ||||||| ||| | |||||||||| ||| |||||||| | || || || ||| | |||| Sbjct: 6347 tgctcccttacttctacacgctcatgtacgaggcgcacatgacgggggcgcccatcgcgc 6406 Query: 164 ggccgctcttcttctc 179 |||||||||||||||| Sbjct: 6407 ggccgctcttcttctc 6422
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 17 ccaacttcgcctcggcgaggca 38 |||||||||||||||||||||| Sbjct: 11607369 ccaacttcgcctcggcgaggca 11607390
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1120F06 Length = 186712 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 17 ccaacttcgcctcggcgaggca 38 |||||||||||||||||||||| Sbjct: 171027 ccaacttcgcctcggcgaggca 171048
>dbj|AP006479.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1272H04 Length = 87113 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 17 ccaacttcgcctcggcgaggca 38 |||||||||||||||||||||| Sbjct: 52741 ccaacttcgcctcggcgaggca 52762
>dbj|AK121178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083G22, full insert sequence Length = 3866 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 17 ccaacttcgcctcggcgaggca 38 |||||||||||||||||||||| Sbjct: 109 ccaacttcgcctcggcgaggca 130
>dbj|AK073416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040D17, full insert sequence Length = 3852 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 17 ccaacttcgcctcggcgaggca 38 |||||||||||||||||||||| Sbjct: 109 ccaacttcgcctcggcgaggca 130
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gagtccgtggcgaggtcggcg 75 ||||||||||||||||||||| Sbjct: 2141142 gagtccgtggcgaggtcggcg 2141162
>dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0015G09 Length = 140893 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gagtccgtggcgaggtcggcg 75 ||||||||||||||||||||| Sbjct: 47171 gagtccgtggcgaggtcggcg 47191 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gagtccgtggcgaggtcggc 74 |||||||||||||||||||| Sbjct: 47115 gagtccgtggcgaggtcggc 47134
>dbj|AP005910.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0034G14 Length = 154120 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gagtccgtggcgaggtcggcg 75 ||||||||||||||||||||| Sbjct: 151977 gagtccgtggcgaggtcggcg 151997 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gagtccgtggcgaggtcggc 74 |||||||||||||||||||| Sbjct: 151921 gagtccgtggcgaggtcggc 151940
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gagtccgtggcgaggtcggcg 75 ||||||||||||||||||||| Sbjct: 2141086 gagtccgtggcgaggtcggcg 2141106
>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132703 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gagtccgtggcgaggtcggcg 75 ||||||||||||||||||||| Sbjct: 23366 gagtccgtggcgaggtcggcg 23386
>ref|XM_956314.1| Neurospora crassa OR74A hypothetical protein ( (AL451017) related to DNA polymerase Tdt-N [Neurospora crassa OR74A] ) (NCU01321.1) partial mRNA Length = 1809 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ccgctcttcttctcgttccc 185 |||||||||||||||||||| Sbjct: 1436 ccgctcttcttctcgttccc 1417
>ref|XM_326813.1| Neurospora crassa OR74A hypothetical protein ( (AL451017) related to DNA polymerase Tdt-N [Neurospora crassa OR74A] ) (NCU01321.1) partial mRNA Length = 1809 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ccgctcttcttctcgttccc 185 |||||||||||||||||||| Sbjct: 1436 ccgctcttcttctcgttccc 1417
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 gtgtccccggtcctcgagcagggc 267 |||||| ||||||||||||||||| Sbjct: 3085825 gtgtccgcggtcctcgagcagggc 3085848
>emb|AL513464.1|NCB12K8 Neurospora crassa DNA linkage group V BAC clone B12K8 Length = 67453 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 ccgctcttcttctcgttccc 185 |||||||||||||||||||| Sbjct: 54251 ccgctcttcttctcgttccc 54270
>emb|AL451017.1|NC12F11 Neurospora crassa DNA linkage group V Cosmid contig 12F11 Length = 74317 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 ccgctcttcttctcgttccc 185 |||||||||||||||||||| Sbjct: 3716 ccgctcttcttctcgttccc 3735
>gb|U22450.1|HVU22450 Hordeum vulgare alpha-glucosidase mRNA, complete cds Length = 2738 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gcgcggccgctcttcttctc 179 |||||||||||||||||||| Sbjct: 1962 gcgcggccgctcttcttctc 1981 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,314,044 Number of Sequences: 3902068 Number of extensions: 1314044 Number of successful extensions: 25701 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25552 Number of HSP's gapped (non-prelim): 148 length of query: 275 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 253 effective length of database: 17,147,199,772 effective search space: 4338241542316 effective search space used: 4338241542316 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
