ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast43d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XTH28_ARATH (Q38909) Probable xyloglucan endotransglucosylase/hy... 45 7e-05
2XTH27_ARATH (Q8LDS2) Probable xyloglucan endotransglucosylase/hy... 39 0.003
3XTH29_ARATH (Q8L7H3) Probable xyloglucan endotransglucosylase/hy... 32 0.64
4XTH1_ARATH (Q9SV61) Putative xyloglucan endotransglucosylase/hyd... 30 2.4

>XTH28_ARATH (Q38909) Probable xyloglucan endotransglucosylase/hydrolase protein|
           28 precursor (EC 2.4.1.207) (At-XTH28) (XTH-28)
          Length = 332

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = +2

Query: 41  FDEGYTQLFGSGNLALRREGKRVHLALDE 127
           FDEGYTQLFG  NL + R+GK V L LDE
Sbjct: 31  FDEGYTQLFGDQNLIVHRDGKSVRLTLDE 59



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>XTH27_ARATH (Q8LDS2) Probable xyloglucan endotransglucosylase/hydrolase protein|
           27 precursor (EC 2.4.1.207) (At-XTH27) (XTH-27)
          Length = 333

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +2

Query: 38  AFDEGYTQLFGSGNLALRREGKRVHLALDE 127
           +F+E YTQLFG  NL + ++GK V L LDE
Sbjct: 30  SFEESYTQLFGDKNLFVHQDGKSVRLTLDE 59



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>XTH29_ARATH (Q8L7H3) Probable xyloglucan endotransglucosylase/hydrolase protein|
           29 precursor (EC 2.4.1.207) (At-XTH29) (XTH-29)
          Length = 357

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 26  VRSMAFDEGYTQLFGSGNLALRREGKRVHLALDE 127
           +  + FDEG + LFG GNL    + + V L LD+
Sbjct: 35  INPIFFDEGLSHLFGEGNLIRSPDDRSVRLLLDK 68



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>XTH1_ARATH (Q9SV61) Putative xyloglucan endotransglucosylase/hydrolase protein|
           1 precursor (EC 2.4.1.207) (At-XTH1) (XTH-1)
          Length = 295

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 14  LHGVVRS-MAFDEGYTQLFGSGNLALRREGKRVHLALDES 130
           ++G+ +S + FD+ Y   +G  N+    +GK V L+LD S
Sbjct: 29  VNGIDQSKVGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHS 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,064,333
Number of Sequences: 219361
Number of extensions: 137000
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 80,573,946
effective HSP length: 19
effective length of database: 76,406,087
effective search space used: 1833746088
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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