ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast43d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450915.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
3dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
4dbj|AK122079.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
5dbj|AK060495.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
6gb|AF119621.2| Pseudomonas abietaniphila BKME-9 DitQ (ditQ), Dit... 42 0.40
7ref|XM_743560.1| Aspergillus fumigatus Af293 mitochondrial enoyl... 42 0.40
8dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, comp... 42 0.40
9gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete... 42 0.40
10gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 1.6
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.6
12gb|AC121881.3| Mus musculus BAC clone RP24-134L8 from chromosome... 40 1.6
13gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 1.6
14dbj|AK053566.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 1.6
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
16dbj|AK061284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.6
17gb|AC146540.2| Gasterosteus aculeatus clone CH213-16D10, complet... 38 6.2
18gb|AY386264.1| Orf virus strain OV-SA00, complete genome 38 6.2
19gb|AY386263.1| Orf virus strain OV-IA82, complete genome 38 6.2
20emb|AL049761.11|HSDJ863C7 Human DNA sequence from clone RP5-863C... 38 6.2
21gb|DQ184476.1| Orf virus strain NZ2, complete genome 38 6.2
22ref|XM_561243.1| Anopheles gambiae str. PEST ENSANGP00000026209 ... 38 6.2
23emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 38 6.2
24gb|AY631852.1| Streptomyces ansochromogenes SanG (sanG) gene, co... 38 6.2
25gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 38 6.2
26gb|U56832.1|AHU56832 Aeromonas hydrophila FK506 binding protein ... 38 6.2
27emb|AL390778.31| Human DNA sequence from clone RP11-399H11 on ch... 38 6.2
28gb|AF011920.1|AF011920 Homo sapiens protein kinase CK2 catalytic... 38 6.2 
>ref|XM_450915.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1457

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 79/97 (81%)
 Strand = Plus / Plus

                                                                       
Query: 36  tggccttcgacgagggctacacccagctcttcggcagtggcaacctcgccctccgccgtg 95
           |||| ||||||||||| ||||| | | | ||||||   |||||||||||| ||| ||| |
Sbjct: 174 tggcgttcgacgaggggtacacgcggatgttcggcgacggcaacctcgccgtcctccgcg 233

                                                
Query: 96  agggcaagcgcgtccacctcgccctcgacgagtccac 132
           | |||   ||||||| |||| ||||||||||||||||
Sbjct: 234 acggccgccgcgtccgcctcaccctcgacgagtccac 270
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                            
Query: 36       tggccttcgacgagggctacacccagctcttcggcagtggcaacctcgccctccgccgtg 95
                |||| ||||||||||| ||||| | | | ||||||   |||||||||||| ||| ||| |
Sbjct: 13727613 tggcgttcgacgaggggtacacgcggatgttcggcgacggcaacctcgccgtcctccgcg 13727554

                                                     
Query: 96       agggcaagcgcgtccacctcgccctcgacgagtccac 132
                | |||   ||||||| |||| ||||||||||||||||
Sbjct: 13727553 acggccgccgcgtccgcctcaccctcgacgagtccac 13727517
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>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1040D06
          Length = 155034

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                          
Query: 36     tggccttcgacgagggctacacccagctcttcggcagtggcaacctcgccctccgccgtg 95
              |||| ||||||||||| ||||| | | | ||||||   |||||||||||| ||| ||| |
Sbjct: 125727 tggcgttcgacgaggggtacacgcggatgttcggcgacggcaacctcgccgtcctccgcg 125668

                                                   
Query: 96     agggcaagcgcgtccacctcgccctcgacgagtccac 132
              | |||   ||||||| |||| ||||||||||||||||
Sbjct: 125667 acggccgccgcgtccgcctcaccctcgacgagtccac 125631
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>dbj|AK122079.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119N05, full
           insert sequence
          Length = 1621

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 79/97 (81%)
 Strand = Plus / Plus

                                                                       
Query: 36  tggccttcgacgagggctacacccagctcttcggcagtggcaacctcgccctccgccgtg 95
           |||| ||||||||||| ||||| | | | ||||||   |||||||||||| ||| ||| |
Sbjct: 175 tggcgttcgacgaggggtacacgcggatgttcggcgacggcaacctcgccgtcctccgcg 234

                                                
Query: 96  agggcaagcgcgtccacctcgccctcgacgagtccac 132
           | |||   ||||||| |||| ||||||||||||||||
Sbjct: 235 acggccgccgcgtccgcctcaccctcgacgagtccac 271
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>dbj|AK060495.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E08, full
           insert sequence
          Length = 1457

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 79/97 (81%)
 Strand = Plus / Plus

                                                                       
Query: 36  tggccttcgacgagggctacacccagctcttcggcagtggcaacctcgccctccgccgtg 95
           |||| ||||||||||| ||||| | | | ||||||   |||||||||||| ||| ||| |
Sbjct: 174 tggcgttcgacgaggggtacacgcggatgttcggcgacggcaacctcgccgtcctccgcg 233

                                                
Query: 96  agggcaagcgcgtccacctcgccctcgacgagtccac 132
           | |||   ||||||| |||| ||||||||||||||||
Sbjct: 234 acggccgccgcgtccgcctcaccctcgacgagtccac 270
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>gb|AF119621.2| Pseudomonas abietaniphila BKME-9 DitQ (ditQ), DitP (ditP), DitO (ditO),
             DitN (ditN), DitM (ditM), DitL (ditL), DitK (ditK), DitJ
             (ditJ), DitI (ditI), dioxygenase DitA oxygenase component
             small subunit (ditA2), dioxygenase DitA oxygenase
             component large subunit (ditA1), DitH (ditH), DitG (ditG),
             DitF (ditF), DitR (ditR), DitE (ditE), DitD (ditD),
             aromatic diterpenoid extradiol ring-cleavage dioygenase
             (ditC), DitB (ditB), and dioxygenase DitA ferredoxin
             component (ditA3) genes, complete cds; and unknown genes
          Length = 26386

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 19    cggcgtcgtgcggtccatggccttc 43
             |||||||||||| ||||||||||||
Sbjct: 22106 cggcgtcgtgcgatccatggccttc 22130
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>ref|XM_743560.1| Aspergillus fumigatus Af293 mitochondrial enoyl reductase
           (Afu3g03330) partial mRNA
          Length = 1227

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 96  agggcaagcgcgtccacctcgccctcgac 124
           |||||||||||||| |||||||| |||||
Sbjct: 818 agggcaagcgcgtcaacctcgccatcgac 846
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>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence
          Length = 256992

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 79    cctcgccctccgccgtgaggg 99
             |||||||||||||||||||||
Sbjct: 42634 cctcgccctccgccgtgaggg 42614
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>gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete sequence
          Length = 232605

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 79   cctcgccctccgccgtgaggg 99
            |||||||||||||||||||||
Sbjct: 4605 cctcgccctccgccgtgaggg 4585
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     gggcaagcgcgtccacctcg 116
              ||||||||||||||||||||
Sbjct: 765071 gggcaagcgcgtccacctcg 765090
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 39      ccttcgacgagggctacacccagctcttcggc 70
               ||||||| || |||||||||||||| ||||||
Sbjct: 7312118 ccttcgaggaaggctacacccagctgttcggc 7312087
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>gb|AC121881.3| Mus musculus BAC clone RP24-134L8 from chromosome 8, complete sequence
          Length = 184359

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    agggctacacccagctcttc 67
             ||||||||||||||||||||
Sbjct: 34606 agggctacacccagctcttc 34587
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>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060E18, from chromosome 3, complete sequence
          Length = 147983

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 39    ccttcgacgagggctacacccagctcttcggc 70
             ||||||| || |||||||||||||| ||||||
Sbjct: 63374 ccttcgaggaaggctacacccagctgttcggc 63343
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>dbj|AK053566.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130110O22 product:unclassifiable, full
           insert sequence
          Length = 1721

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  agggctacacccagctcttc 67
           ||||||||||||||||||||
Sbjct: 453 agggctacacccagctcttc 434
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 39      ccttcgacgagggctacacccagctcttcggc 70
               ||||||| || |||||||||||||| ||||||
Sbjct: 7310013 ccttcgaggaaggctacacccagctgttcggc 7309982
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>dbj|AK061284.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-G03, full
           insert sequence
          Length = 1194

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 39  ccttcgacgagggctacacccagctcttcggc 70
           ||||||| || |||||||||||||| ||||||
Sbjct: 210 ccttcgaggaaggctacacccagctgttcggc 241
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>gb|AC146540.2| Gasterosteus aculeatus clone CH213-16D10, complete sequence
          Length = 212474

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    caacctcgccctccgccgt 94
             |||||||||||||||||||
Sbjct: 64029 caacctcgccctccgccgt 64011
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>gb|AY386264.1| Orf virus strain OV-SA00, complete genome
          Length = 139962

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     gcgccgctccacggcgtcg 26
             |||||||||||||||||||
Sbjct: 77165 gcgccgctccacggcgtcg 77183
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>gb|AY386263.1| Orf virus strain OV-IA82, complete genome
          Length = 137241

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     gcgccgctccacggcgtcg 26
             |||||||||||||||||||
Sbjct: 76030 gcgccgctccacggcgtcg 76048
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>emb|AL049761.11|HSDJ863C7 Human DNA sequence from clone RP5-863C7 on chromosome 20p12.3-13
             Contains the CSNK2A1 gene for casein kinase 2 alpha 1
             polypeptide (EC 2.7.1.37), the 5' end of the C20orf140
             gene for a novel protein similar to Drosophila CG17883 and
             a CpG island, complete sequence
          Length = 108653

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 77    aacctcgccctccgccgtgaggg 99
             |||||||||||||||| ||||||
Sbjct: 86545 aacctcgccctccgccctgaggg 86567
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>gb|DQ184476.1| Orf virus strain NZ2, complete genome
          Length = 137820

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     gcgccgctccacggcgtcg 26
             |||||||||||||||||||
Sbjct: 76402 gcgccgctccacggcgtcg 76420
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>ref|XM_561243.1| Anopheles gambiae str. PEST ENSANGP00000026209
          (ENSANGG00000023191), partial mRNA
          Length = 471

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 58 ccagctcttcggcagtggc 76
          |||||||||||||||||||
Sbjct: 24 ccagctcttcggcagtggc 42
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 34      catggccttcgacgagggc 52
               |||||||||||||||||||
Sbjct: 3319018 catggccttcgacgagggc 3319036
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>gb|AY631852.1| Streptomyces ansochromogenes SanG (sanG) gene, complete cds
          Length = 5073

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 102  agcgcgtccacctcgccct 120
            |||||||||||||||||||
Sbjct: 2521 agcgcgtccacctcgccct 2539
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 78      acctcgccctccgccgtga 96
               |||||||||||||||||||
Sbjct: 2854847 acctcgccctccgccgtga 2854865
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>gb|U56832.1|AHU56832 Aeromonas hydrophila FK506 binding protein (fkpA) gene, complete
           cds in 3.9 kb fragment
          Length = 3923

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 58  ccagctcttcggcagtggc 76
           |||||||||||||||||||
Sbjct: 450 ccagctcttcggcagtggc 432
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>emb|AL390778.31| Human DNA sequence from clone RP11-399H11 on chromosome 9 Contains the
             3' end of the OLFM1 gene for olfactomedin 1, two putative
             novel transcripts and two CpG islands, complete sequence
          Length = 221372

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 56    acccagctcttcggcagtg 74
             |||||||||||||||||||
Sbjct: 28857 acccagctcttcggcagtg 28875
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>gb|AF011920.1|AF011920 Homo sapiens protein kinase CK2 catalytic subunit alpha gene, exon 1
          Length = 17850

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 77   aacctcgccctccgccgtgaggg 99
            |||||||||||||||| ||||||
Sbjct: 7229 aacctcgccctccgccctgaggg 7207


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 668,388
Number of Sequences: 3902068
Number of extensions: 668388
Number of successful extensions: 49956
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49505
Number of HSP's gapped (non-prelim): 446
length of query: 132
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 111
effective length of database: 17,151,101,840
effective search space: 1903772304240
effective search space used: 1903772304240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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