Clone Information

BLAST Search Result

Clone Name	bast43d01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK109425.2\| Oryza sativa (japonica cultivar-group) cDNA clon...	196	4e-47
2	dbj\|AK068813.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	196	4e-47
3	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	117	3e-23
4	dbj\|AP003524.3\| Oryza sativa (japonica cultivar-group) genomic D...	117	3e-23
5	dbj\|AP004279.1\| Oryza sativa (japonica cultivar-group) genomic D...	90	7e-15
6	dbj\|AK104440.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	7e-15
7	dbj\|AK061418.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	7e-15
8	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	46	0.089
9	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	44	0.35
10	emb\|BX640445.1\| Bordetella bronchiseptica strain RB50, complete ...	42	1.4
11	emb\|BX640431.1\| Bordetella parapertussis strain 12822, complete ...	42	1.4
12	dbj\|AB011476.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	1.4
13	ref\|NM_124984.2\| Arabidopsis thaliana unknown protein AT5G56020 ...	40	5.5
14	ref\|NM_013717.1\| Mus musculus endothelial precursor protein B9 (...	40	5.5
15	gb\|CP000079.1\| Leishmania major strain Friedlin chromosome 27, c...	40	5.5
16	gb\|BT015394.1\| Arabidopsis thaliana At5g56020 gene, complete cds	40	5.5
17	ref\|XM_613065.2\| PREDICTED: Bos taurus similar to Interleukin-17...	40	5.5
18	gb\|BC008113.1\| Mus musculus endothelial precursor protein B9, mR...	40	5.5
19	gb\|BT014748.1\| Arabidopsis thaliana At5g56020 mRNA, complete cds	40	5.5
20	ref\|XM_654489.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	40	5.5
21	gb\|AY273869.1\| Pseudomonas aeruginosa PA14 pathogenicity island ...	40	5.5
22	ref\|XM_842955.1\| Leishmania major strain Friedlin hypothetical p...	40	5.5
23	emb\|X95705.1\|SGMELOPER Streptomyces galbus melC1, melC2 and rnhH...	40	5.5
24	gb\|CP000088.1\| Thermobifida fusca YX, complete genome	40	5.5
25	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	40	5.5
26	emb\|AL662995.2\|OSJN00202 Oryza sativa genomic DNA, chromosome 4,...	40	5.5
27	emb\|AL604029.12\| Mouse DNA sequence from clone RP23-155J3 on chr...	40	5.5
28	dbj\|D10452.1\|SH128K Pseudorabies virus (PRV) 28K protein gene, c...	40	5.5
29	dbj\|AK131701.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	5.5
30	gb\|DQ145933.1\| Hordeum vulgare subsp. vulgare ABA 8'-hydroxylase...	40	5.5
31	dbj\|AK010355.1\| Mus musculus ES cells cDNA, RIKEN full-length en...	40	5.5
32	dbj\|AK003038.1\| Mus musculus adult male brain cDNA, RIKEN full-l...	40	5.5
33	tpg\|BK001744.1\| TPA: TPA_exp: Suid herpesvirus 1, complete genome	40	5.5
34	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.5
35	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.5
36	gb\|AC005330.2\|AC005330 Homo sapiens chromosome 19, cosmid R34047...	40	5.5
37	ref\|XM_213314.3\| PREDICTED: Rattus norvegicus endothelial precur...	40	5.5
38	dbj\|AP006057.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.5
39	emb\|AL627327.29\| Mouse DNA sequence from clone RP23-62O17 on chr...	40	5.5
40	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	5.5
41	dbj\|AB030483.1\| Mus musculus mRNA for B9, complete cds	40	5.5

>dbj|AK109425.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-C05, full
           insert sequence
          Length = 1017

 Score =  196 bits (99), Expect = 4e-47
 Identities = 114/119 (95%)
 Strand = Plus / Plus

                                                                       
Query: 287 ttcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttcaatgtg 346
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 263 ttcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttcagcgtg 322

                                                                      
Query: 347 gtgaccaagggcgtgcgggagctgccggggagcttccagggcgccaccagcagcttccc 405
           ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 323 gtgaccaagggcgtgcgggagctgccggggagcttccagagcgcgacgagcagcttccc 381



 Score =  117 bits (59), Expect = 3e-23
 Identities = 109/125 (87%), Gaps = 3/125 (2%)
 Strand = Plus / Plus

                                                                       
Query: 142 cgcgatgcagaagacggcgcagtcctggttcaccggcggcaccgcctccc---ccagcac 198
           ||||||||| |||||||||||| ||||||||||||||||| ||||| |||   ||  | |
Sbjct: 115 cgcgatgcacaagacggcgcaggcctggttcaccggcggccccgccgcccccgccgcctc 174

                                                                       
Query: 199 cgccgccgagtcgcagccctccctgctcgccgactggaactcctatgccgccacccgccc 258
           ||||| |||||||||||| ||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 175 cgccggcgagtcgcagccgtccctcctcgccgactggaactcctacgccgcctcccgccc 234

                
Query: 259 ggacg 263
            ||||
Sbjct: 235 cgacg 239

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>dbj|AK068813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159M08, full
           insert sequence
          Length = 1024

 Score =  196 bits (99), Expect = 4e-47
 Identities = 114/119 (95%)
 Strand = Plus / Plus

                                                                       
Query: 287 ttcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttcaatgtg 346
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 270 ttcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttcagcgtg 329

                                                                      
Query: 347 gtgaccaagggcgtgcgggagctgccggggagcttccagggcgccaccagcagcttccc 405
           ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 330 gtgaccaagggcgtgcgggagctgccggggagcttccagagcgcgacgagcagcttccc 388



 Score =  117 bits (59), Expect = 3e-23
 Identities = 109/125 (87%), Gaps = 3/125 (2%)
 Strand = Plus / Plus

                                                                       
Query: 142 cgcgatgcagaagacggcgcagtcctggttcaccggcggcaccgcctccc---ccagcac 198
           ||||||||| |||||||||||| ||||||||||||||||| ||||| |||   ||  | |
Sbjct: 122 cgcgatgcacaagacggcgcaggcctggttcaccggcggccccgccgcccccgccgcctc 181

                                                                       
Query: 199 cgccgccgagtcgcagccctccctgctcgccgactggaactcctatgccgccacccgccc 258
           ||||| |||||||||||| ||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 182 cgccggcgagtcgcagccgtccctcctcgccgactggaactcctacgccgcctcccgccc 241

                
Query: 259 ggacg 263
            ||||
Sbjct: 242 cgacg 246

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  117 bits (59), Expect = 3e-23
 Identities = 109/125 (87%), Gaps = 3/125 (2%)
 Strand = Plus / Minus

                                                                            
Query: 142      cgcgatgcagaagacggcgcagtcctggttcaccggcggcaccgcctccc---ccagcac 198
                ||||||||| |||||||||||| ||||||||||||||||| ||||| |||   ||  | |
Sbjct: 11032060 cgcgatgcacaagacggcgcaggcctggttcaccggcggccccgccgcccccgccgcctc 11032001

                                                                            
Query: 199      cgccgccgagtcgcagccctccctgctcgccgactggaactcctatgccgccacccgccc 258
                ||||| |||||||||||| ||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 11032000 cgccggcgagtcgcagccgtccctcctcgccgactggaactcctacgccgcctcccgccc 11031941

                     
Query: 259      ggacg 263
                 ||||
Sbjct: 11031940 cgacg 11031936



 Score =  109 bits (55), Expect = 7e-21
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                       
Query: 287      ttcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttca 341
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11031912 ttcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttca 11031858



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 57/60 (95%)
 Strand = Plus / Minus

                                                                            
Query: 346      ggtgaccaagggcgtgcgggagctgccggggagcttccagggcgccaccagcagcttccc 405
                |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 11031762 ggtgaccaagggcgtgcgggagctgccggggagcttccagagcgcgacgagcagcttccc 11031703



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                     
Query: 288      tcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttc 340
                |||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 23840352 tcgacatcgaggccgccgtccgctccgccaacgaccgcgtctccggcaccttc 23840404



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 210      cgcagccctccctgctcgccgactggaactcctatgccgcc 250
                ||||||| || |||||||| || ||||||||||| ||||||
Sbjct: 23840262 cgcagccgtcgctgctcgcggaatggaactcctacgccgcc 23840302

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>dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0501G08
          Length = 173505

 Score =  117 bits (59), Expect = 3e-23
 Identities = 109/125 (87%), Gaps = 3/125 (2%)
 Strand = Plus / Minus

                                                                          
Query: 142    cgcgatgcagaagacggcgcagtcctggttcaccggcggcaccgcctccc---ccagcac 198
              ||||||||| |||||||||||| ||||||||||||||||| ||||| |||   ||  | |
Sbjct: 116142 cgcgatgcacaagacggcgcaggcctggttcaccggcggccccgccgcccccgccgcctc 116083

                                                                          
Query: 199    cgccgccgagtcgcagccctccctgctcgccgactggaactcctatgccgccacccgccc 258
              ||||| |||||||||||| ||||| |||||||||||||||||||| |||||| |||||||
Sbjct: 116082 cgccggcgagtcgcagccgtccctcctcgccgactggaactcctacgccgcctcccgccc 116023

                   
Query: 259    ggacg 263
               ||||
Sbjct: 116022 cgacg 116018



 Score =  109 bits (55), Expect = 7e-21
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                     
Query: 287    ttcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttca 341
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115994 ttcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttca 115940



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 57/60 (95%)
 Strand = Plus / Minus

                                                                          
Query: 346    ggtgaccaagggcgtgcgggagctgccggggagcttccagggcgccaccagcagcttccc 405
              |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 115844 ggtgaccaagggcgtgcgggagctgccggggagcttccagagcgcgacgagcagcttccc 115785

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>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0556B08
          Length = 136775

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                  
Query: 288   tcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttc 340
             |||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 80017 tcgacatcgaggccgccgtccgctccgccaacgaccgcgtctccggcaccttc 80069



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 210   cgcagccctccctgctcgccgactggaactcctatgccgcc 250
             ||||||| || |||||||| || ||||||||||| ||||||
Sbjct: 79927 cgcagccgtcgctgctcgcggaatggaactcctacgccgcc 79967

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>dbj|AK104440.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-H05, full
           insert sequence
          Length = 1074

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                
Query: 288 tcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttc 340
           |||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 189 tcgacatcgaggccgccgtccgctccgccaacgaccgcgtctccggcaccttc 241



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 210 cgcagccctccctgctcgccgactggaactcctatgccgcc 250
           ||||||| || |||||||| || ||||||||||| ||||||
Sbjct: 99  cgcagccgtcgctgctcgcggaatggaactcctacgccgcc 139

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>dbj|AK061418.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E09, full
           insert sequence
          Length = 1160

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                
Query: 288 tcgacatcgaggccgccgtccgctccgccaacgacaccgtctccggcaccttc 340
           |||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 223 tcgacatcgaggccgccgtccgctccgccaacgaccgcgtctccggcaccttc 275



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 210 cgcagccctccctgctcgccgactggaactcctatgccgcc 250
           ||||||| || |||||||| || ||||||||||| ||||||
Sbjct: 133 cgcagccgtcgctgctcgcggaatggaactcctacgccgcc 173

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 178     cggcaccgcctcccccagcaccgccgccgagtcgc 212
               ||||| ||||||| |||||||||||||| ||||||
Sbjct: 4029659 cggcagcgcctcctccagcaccgccgccaagtcgc 4029693

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 171     tcaccggcggcaccgcctcccc 192
               ||||||||||||||||||||||
Sbjct: 2933457 tcaccggcggcaccgcctcccc 2933478



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 294     tcgaggccgccgtccgctccgcca 317
               ||||||||||||||||| ||||||
Sbjct: 4668726 tcgaggccgccgtccgcgccgcca 4668749



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 168     ggttcaccggcggcaccgcc 187
               ||||||||||||||||||||
Sbjct: 2024881 ggttcaccggcggcaccgcc 2024900

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>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 183    ccgcctcccccagcaccgccgccga 207
              |||||| ||||||||||||||||||
Sbjct: 106518 ccgcctgccccagcaccgccgccga 106494

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>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 183    ccgcctcccccagcaccgccgccga 207
              |||||| ||||||||||||||||||
Sbjct: 173628 ccgcctgccccagcaccgccgccga 173652

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>dbj|AB011476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDA7
          Length = 82033

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 314   gccaacgacaccgtctccggcaccttcaatgtg 346
             ||||||||||| || ||||||||||| ||||||
Sbjct: 19092 gccaacgacactgtttccggcacctttaatgtg 19124

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>ref|NM_124984.2| Arabidopsis thaliana unknown protein AT5G56020 mRNA, complete cds
          Length = 953

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 314 gccaacgacaccgtctccggcaccttcaatgt 345
           ||||||||||| || ||||||||||| |||||
Sbjct: 284 gccaacgacactgtttccggcacctttaatgt 315

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>ref|NM_013717.1| Mus musculus endothelial precursor protein B9 (Eppb9), mRNA
          Length = 817

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cttcaatgtggtgaccaagg 356
           ||||||||||||||||||||
Sbjct: 547 cttcaatgtggtgaccaagg 566

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>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 179    ggcaccgcctcccccagcaccgccgccg 206
              ||||||||| |||||| |||||||||||
Sbjct: 390947 ggcaccgccgcccccaccaccgccgccg 390974

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>gb|BT015394.1| Arabidopsis thaliana At5g56020 gene, complete cds
          Length = 684

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 314 gccaacgacaccgtctccggcaccttcaatgt 345
           ||||||||||| || ||||||||||| |||||
Sbjct: 178 gccaacgacactgtttccggcacctttaatgt 209

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>ref|XM_613065.2| PREDICTED: Bos taurus similar to Interleukin-17 receptor B
           precursor (IL-17 receptor B) (IL-17RB) (Interleukin-17B
           receptor) (IL-17B receptor) (IL-17 receptor homolog 1)
           (IL-17Rh1) (IL17Rh1) (Cytokine receptor CRL4)
           (LOC533605), mRNA
          Length = 2847

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 183 ccgcctcccccagcaccgcc 202
           ||||||||||||||||||||
Sbjct: 851 ccgcctcccccagcaccgcc 832

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>gb|BC008113.1| Mus musculus endothelial precursor protein B9, mRNA (cDNA clone
           MGC:5687 IMAGE:3483517), complete cds
          Length = 770

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cttcaatgtggtgaccaagg 356
           ||||||||||||||||||||
Sbjct: 515 cttcaatgtggtgaccaagg 534

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>gb|BT014748.1| Arabidopsis thaliana At5g56020 mRNA, complete cds
          Length = 692

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 314 gccaacgacaccgtctccggcaccttcaatgt 345
           ||||||||||| || ||||||||||| |||||
Sbjct: 186 gccaacgacactgtttccggcacctttaatgt 217

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>ref|XM_654489.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1977.2), mRNA
          Length = 1029

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 49  tccctccacccccgcgactcgtcacgca 76
           ||||||||||||||||  ||||||||||
Sbjct: 592 tccctccacccccgcgcgtcgtcacgca 619

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>gb|AY273869.1| Pseudomonas aeruginosa PA14 pathogenicity island PAPI-1, complete
            sequence
          Length = 111332

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  cgcctcgccgccggcagcta 123
            ||||||||||||||||||||
Sbjct: 4259 cgcctcgccgccggcagcta 4240

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>ref|XM_842955.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0351)
            partial mRNA
          Length = 1758

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 179  ggcaccgcctcccccagcaccgccgccg 206
            ||||||||| |||||| |||||||||||
Sbjct: 1110 ggcaccgccgcccccaccaccgccgccg 1083

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>emb|X95705.1|SGMELOPER Streptomyces galbus melC1, melC2 and rnhH genes
          Length = 2199

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 172  caccggcggcaccgcctcccccagcacc 199
            ||||||||||||||||||| || |||||
Sbjct: 1395 caccggcggcaccgcctcctcccgcacc 1368

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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 301     cgccgtccgctccgccaacgacac 324
               |||||||||| |||||||||||||
Sbjct: 2085818 cgccgtccgcaccgccaacgacac 2085841

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     cagcaccgccgccgagtcgc 212
               ||||||||||||||||||||
Sbjct: 3931252 cagcaccgccgccgagtcgc 3931271

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>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24,
             complete sequence
          Length = 132465

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   ctcgcctcgccgccggcagc 121
             ||||||||||||||||||||
Sbjct: 43769 ctcgcctcgccgccggcagc 43750

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>emb|AL604029.12| Mouse DNA sequence from clone RP23-155J3 on chromosome 11 Contains an
             H3 histone family 3A (H3f3a) pseudogene, the Zfp179 gene
             for zinc finger protein 179, the gene for the possible
             ortholog of H. sapiens microfibrillar-associated protein 4
             (MFAP4) (1110007F23Rik), the Mapk7 gene for
             mitogen-activated kinase 7, a novel gene (3110043A19Rik),
             the Eppb9 gene for endothelial precursor protein B9, the
             Epn2 gene for epsin 2, a novel gene and three CpG islands,
             complete sequence
          Length = 204653

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   cttcaatgtggtgaccaagg 356
             ||||||||||||||||||||
Sbjct: 99756 cttcaatgtggtgaccaagg 99775

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>dbj|D10452.1|SH128K Pseudorabies virus (PRV) 28K protein gene, complete cds
          Length = 1725

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 183 ccgcctcccccagcaccgccgccg 206
           ||||||||| ||||||||||||||
Sbjct: 719 ccgcctcccgcagcaccgccgccg 742

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>dbj|AK131701.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700014D22 product:endothelial precursor
           protein B9, full insert sequence
          Length = 774

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cttcaatgtggtgaccaagg 356
           ||||||||||||||||||||
Sbjct: 538 cttcaatgtggtgaccaagg 557

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>gb|DQ145933.1| Hordeum vulgare subsp. vulgare ABA 8'-hydroxylase 2 mRNA, complete
           cds
          Length = 1567

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 290 gacatcgaggccgccgtccgctcc 313
           ||||||||||||||||| ||||||
Sbjct: 505 gacatcgaggccgccgttcgctcc 528

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>dbj|AK010355.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410003F03 product:endothelial precursor protein
           B9, full insert sequence
          Length = 812

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cttcaatgtggtgaccaagg 356
           ||||||||||||||||||||
Sbjct: 576 cttcaatgtggtgaccaagg 595

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>dbj|AK003038.1| Mus musculus adult male brain cDNA, RIKEN full-length enriched
           library, clone:0710008G05 product:endothelial precursor
           protein B9, full insert sequence
          Length = 778

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cttcaatgtggtgaccaagg 356
           ||||||||||||||||||||
Sbjct: 542 cttcaatgtggtgaccaagg 561

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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 183    ccgcctcccccagcaccgccgccg 206
              ||||||||| ||||||||||||||
Sbjct: 126298 ccgcctcccgcagcaccgccgccg 126321

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 102      ctcgcctcgccgccggcagc 121
                ||||||||||||||||||||
Sbjct: 12369743 ctcgcctcgccgccggcagc 12369724

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 294      tcgaggccgccgtccgctcc 313
                ||||||||||||||||||||
Sbjct: 17200022 tcgaggccgccgtccgctcc 17200003

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>gb|AC005330.2|AC005330 Homo sapiens chromosome 19, cosmid R34047 and overlapping PCR product,
             complete sequence
          Length = 41257

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   gcagccctccctgctcgccg 230
             ||||||||||||||||||||
Sbjct: 25801 gcagccctccctgctcgccg 25782

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>ref|XM_213314.3| PREDICTED: Rattus norvegicus endothelial precursor protein B9
           (predicted) (Eppb9_predicted), mRNA
          Length = 818

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cttcaatgtggtgaccaagg 356
           ||||||||||||||||||||
Sbjct: 577 cttcaatgtggtgaccaagg 596

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>dbj|AP006057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1342C04
          Length = 172097

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    tcgaggccgccgtccgctcc 313
              ||||||||||||||||||||
Sbjct: 140779 tcgaggccgccgtccgctcc 140760

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>emb|AL627327.29| Mouse DNA sequence from clone RP23-62O17 on chromosome 4, complete
              sequence
          Length = 249562

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     gcatcccagcccacctcaat 101
              ||||||||||||||||||||
Sbjct: 157855 gcatcccagcccacctcaat 157836

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 178     cggcaccgcctcccccagcaccgccgcc 205
               ||||| ||||||| ||||||||||||||
Sbjct: 3107740 cggcagcgcctccgccagcaccgccgcc 3107767

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>dbj|AB030483.1| Mus musculus mRNA for B9, complete cds
          Length = 817

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 cttcaatgtggtgaccaagg 356
           ||||||||||||||||||||
Sbjct: 547 cttcaatgtggtgaccaagg 566


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,586,744
Number of Sequences: 3902068
Number of extensions: 2586744
Number of successful extensions: 61079
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60165
Number of HSP's gapped (non-prelim): 914
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result