ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast43c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HDAC7_MOUSE (Q8C2B3) Histone deacetylase 7a (HD7a) 29 7.1

>HDAC7_MOUSE (Q8C2B3) Histone deacetylase 7a (HD7a)|
          Length = 938

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 300 GEGSKDGQGTLLMSDHFVFPPSEHENLPIETALLEPQDSTSVDAAAAAFR 449
           G G  +G+G++ +  H   PP E ++L    +   P DS  +  A    R
Sbjct: 423 GRGPPEGRGSISLQQHQQVPPWEQQHLAGRLSQGSPGDSVLIPLAQVGHR 472


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,158,529
Number of Sequences: 219361
Number of extensions: 972873
Number of successful extensions: 2915
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2913
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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