>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 664

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 38/54 (70%), Positives = 45/54 (83%)
 Frame = +3

Query: 216 ALKFLIYGRTGWIGGLLGKLCTAQGIPFAYGAGRLENRAQLEADIDEVAPTHVF 377
           +LKFLIYG+TGW+GGLLGKLC  QGIP+ YG GRLE+RA L ADI  + P+HVF
Sbjct: 379 SLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVF 432

>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 669

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
 Frame = +3

Query: 195 TNGS-SPPALKFLIYGRTGWIGGLLGKLCTAQGIPFAYGAGRLENRAQLEADIDEVAPTH 371
           +NG+   P+LKFLIYG+TGWIGGLLGK+C  QGI + YG GRLE+R+ L  DI  V PTH
Sbjct: 376 SNGTPQKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTH 435

Query: 372 VF 377
           VF
Sbjct: 436 VF 437

>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC|
           1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose
           synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose
           synthase MUM4)
          Length = 667

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 41/62 (66%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
 Frame = +3

Query: 198 NGSS--PPALKFLIYGRTGWIGGLLGKLCTAQGIPFAYGAGRLENRAQLEADIDEVAPTH 371
           NG S    +LKFLIYG+TGW+GGLLGKLC  QGI + YG GRLE+RA L ADI  + PTH
Sbjct: 374 NGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTH 433

Query: 372 VF 377
           VF
Sbjct: 434 VF 435

>TILS_XYLFT (Q87BE2) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 437

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +2

Query: 68  QRILSSRLPIIIPAPSRLHL---DLATTPPFPLPSRISPFRHGDLHQRLLAAGAQVPHLR 238
           Q + S   P+I+P   +LHL   D  T P FP P R+   R G   +RL+  G    H  
Sbjct: 322 QPLWSGTAPLILPDGGQLHLESTDHETVPGFPHPLRVRARRGG---ERLILPGRTHSHPL 378

Query: 239 PHRL-DRGSP 265
            H L D G P
Sbjct: 379 KHLLQDVGIP 388

>ARLY_HELHP (Q7VFF8) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 472

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 PALKFLIYGRTGWI-GGLLGKLCTAQGIPFAYGAGRLENR 329
           P +  L+ G++G + G L+G LC  +G+PFAY     E++
Sbjct: 286 PDVPELLRGKSGRVYGELMGLLCVMKGLPFAYNKDTQEDK 325

>REPS2_MOUSE (Q80XA6) RalBP1-associated Eps domain-containing protein 2|
           (RalBP1-interacting protein 2) (Partner of RalBP1)
          Length = 521

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 98  IIPAPSRLHLDLATTPPFPLPSRISPFRHGDLHQRLLAAGAQVPHLRPHRLD 253
           ++P P  L       PP P P++  P    DLH +L  A +Q     P ++D
Sbjct: 372 LLPPPPAL-------PPRPCPTQSEPVSEADLHSQLNRAPSQAAESSPTKMD 416

>ARLY_LACPL (P59617) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 467

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +3

Query: 213 PALKFLIYGRTGWI-GGLLGKLCTAQGIPFAYGAGRLENRAQLEADIDEVAPT----HVF 377
           P +  LI G++G + G L+G L   +GIP AY     E++   E   D V       HVF
Sbjct: 288 PDMAELIRGKSGRVYGNLMGLLTVMKGIPLAYNKDLQEDK---EGAFDTVTTVLTSLHVF 344

Query: 378 T 380
           T
Sbjct: 345 T 345

>ARLY_OCEIH (Q8ELT9) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 459

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 PALKFLIYGRTGWI-GGLLGKLCTAQGIPFAYGAGRLENR 329
           P +  L+ G+TG + G L+G L T +G+P AY     E++
Sbjct: 285 PDVAELVRGKTGRVYGHLMGMLTTLKGLPLAYNKDMQEDK 324

>ISPE_GLOVI (Q7NPF3) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 302

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 161 SRISPFRHGDLHQRLLAAGAQVPHLRPHRLDRGS 262
           +RI+P  H DL + +L A  QV  LR H +  G+
Sbjct: 212 ARIAPLLHNDLERAVLPAYPQVSALREHLVSAGA 245

>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 68   QRILSSRLPIIIPAPSRLHLDLATTPPFPLPSRISPFR 181
            +R L  RLP   P    L L L T PP P P    P+R
Sbjct: 1441 RRSLLHRLPPTAPGVGPLLLQLGTEPPAPHPGVSKPWR 1478

>CPO_DROME (Q01617) Protein couch potato|
          Length = 738

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +2

Query: 83  SRLPIIIPAPSRLHLDLATTPPFPLPSRISPFRHGD--LHQRLLAAGAQVPHLRPHRLDR 256
           S LP+ +P P  + + L  + P P+  +  P  H     H   ++    + H   H+L  
Sbjct: 120 SVLPVTVPVPVPVSVPLPVSVPVPVSVKGHPISHTHQIAHTHQISHSHPISHPHHHQLSF 179

Query: 257 GSPRQ 271
             P Q
Sbjct: 180 AHPTQ 184

>ARLY_GLOVI (Q7NLS0) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 468

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 PALKFLIYGRTGWI-GGLLGKLCTAQGIPFAYGAGRLENR 329
           P +  L+ G+TG I G L+G L   +G+P AY     E++
Sbjct: 287 PDVPELVRGKTGRIFGHLMGMLTVLKGLPLAYNKDLQEDK 326

>HDAC4_CHICK (P83038) Histone deacetylase 4 (HD4)|
          Length = 1080

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 77  LSSRLPIIIPAPSRLHLDLATTPPFPLPSRISPFRHGDLHQRLLA 211
           +S+ LP+ + AP+ + +DL     FP+P      R   L Q LLA
Sbjct: 34  VSTALPLQV-APTSVPMDLRLDHQFPMPVTEPTLREQQLQQELLA 77

>ARLY1_RHILO (Q98G36) Argininosuccinate lyase 1 (EC 4.3.2.1) (Arginosuccinase 1)|
           (ASAL 1)
          Length = 466

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 228 LIYGRTGWIGG-LLGKLCTAQGIPFAYGAGRLENR 329
           L+ G+TG + G L+G L   +G+P  YG    E++
Sbjct: 297 LVRGKTGRVNGHLVGLLTVMKGMPLTYGKDMQEDK 331

>ARLY_PROAC (Q6A816) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 468

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 213 PALKFLIYGRTG-WIGGLLGKLCTAQGIPFAYGAGRLENRAQLEADIDEVAPTHVFTP 383
           P +  L  G+ G  IG L G + + +G+P AY     E++   E   D++   H+  P
Sbjct: 286 PDIAELARGKAGRLIGDLAGLMASLKGLPLAYARDLQEDK---EPVFDQIDQLHLLLP 340

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 214 GGEEPLVEIAMAEWGDPGGEWERGSG---GEIEMETGRGRDYNREA 86
           G E+   + A  E  + GGE  RG+G   GE E E+GR     R A
Sbjct: 345 GDEDEDEDRAEGEGREDGGEGPRGAGGGAGESESESGRAEGAPRSA 390

>V124_ASFB7 (P18558) U124 protein precursor|
          Length = 124

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 176 FRHGDLHQRLLAAGAQVPHLRPHRLDR 256
           +  G+ H  ++     VPH RPHRL R
Sbjct: 90  YSEGNGHYHVMDCSNPVPHNRPHRLGR 116

>EVC_MOUSE (P57680) Ellis-van Creveld syndrome protein homolog|
          Length = 1005

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 149 FPLPSRISPFR----HGDLHQRLLAAGAQVPHLRPHRLDRGSP 265
           +P+  +  P      H  LH+ L  A A +PHL PH+    SP
Sbjct: 116 YPINQKFRPLADGSSHPSLHENLTQAAAILPHL-PHQPAEASP 157

>BSH_CHICK (Q6RFL5) Brain-specific homeobox protein homolog|
          Length = 233

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +2

Query: 77  LSSRLPII------IPAPSRLHLDLATTPPFPLPSRISPFRHGDLHQRLLAAGAQVPHLR 238
           L+SR+P++      +PAP+ L        P P P+   P  H      L  +G  VP L 
Sbjct: 45  LASRVPLLDYGYPLMPAPALL-------APHPHPALHKPEHHHHHPYFLTTSGVPVPALF 97

Query: 239 PH 244
           PH
Sbjct: 98  PH 99

>SARM1_CAEEL (Q86DA5) Sterile alpha and TIR motif-containing protein tir-1|
           (Neuronal symmetry protein 2) (SARM1 homolog)
          Length = 1000

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 110 PSRLHLDLATTPPFPLPSRISPFRHGDLHQRLLAAGAQVPHLR 238
           P  + + L      P P++ +P  +GDL+  +L+ G  +P+ R
Sbjct: 109 PPSISVPLPPKSAPPCPTQPAPLTNGDLYPTILSNGTPIPNGR 151

>RPOC2_EMIHU (Q4G3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 1267

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 231  IYGRTGWIGGLLGKLCTAQGIPFAYGAGRLENRAQLEADIDEVAPT 368
            I GR  W+ GL   +   + IP   G   LEN+ +L  +  E+  T
Sbjct: 1201 IEGRKDWLTGLKENVIIGRLIPAGTGFNYLENQERLAREKGEIDAT 1246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,784,961
Number of Sequences: 219361
Number of extensions: 584802
Number of successful extensions: 1581
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)