Clone Information

BLAST Search Result

Clone Name	bast43c01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	141	1e-30
2	dbj\|AK102988.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	141	1e-30
3	emb\|AL662958.3\|OSJN00156 Oryza sativa genomic DNA, chromosome 4,...	141	1e-30
4	ref\|XM_473208.1\| Oryza sativa (japonica cultivar-group), predic...	135	9e-29
5	dbj\|AK073454.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	68	2e-08
6	gb\|AE017343.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	46	0.061
7	ref\|XM_569677.1\| Cryptococcus neoformans var. neoformans JEC21 h...	46	0.061
8	gb\|AF281817.1\|AF281817 Tupaia herpesvirus strain 2, complete genome	44	0.24
9	ref\|XM_471860.1\| Oryza sativa (japonica cultivar-group), predic...	42	0.95
10	ref\|XM_540418.2\| PREDICTED: Canis familiaris similar to Ezrin-ra...	42	0.95
11	emb\|AL731634.4\|OSJN00276 Oryza sativa genomic DNA, chromosome 4,...	42	0.95
12	gb\|AC116667.2\| Homo sapiens chromosome 16 clone RP11-346C20, com...	42	0.95
13	gb\|L32833.1\|HUMZFHPA Homo sapiens zinc finger homeodomain protei...	42	0.95
14	gb\|AC153727.6\| Mus musculus BAC clone RP23-354L15 from chromosom...	40	3.8
15	gb\|AC138671.16\| Mus musculus chromosome 5, clone RP23-443N7, com...	40	3.8
16	gb\|AC161120.5\| Mus musculus BAC clone RP23-84A2 from chromosome ...	40	3.8
17	gb\|AC151846.3\| Mus musculus BAC clone RP23-13B8 from chromosome ...	40	3.8
18	ref\|XM_957341.1\| Neurospora crassa OR74A hypothetical protein (N...	40	3.8
19	ref\|XM_328623.1\| Neurospora crassa OR74A hypothetical protein (N...	40	3.8
20	gb\|AC136518.3\| Mus musculus BAC clone RP23-304K22 from chromosom...	40	3.8
21	ref\|XM_809491.1\| Trypanosoma cruzi strain CL Brener dispersed ge...	40	3.8
22	ref\|XM_811214.1\| Trypanosoma cruzi strain CL Brener dispersed ge...	40	3.8
23	ref\|XM_815311.1\| Trypanosoma cruzi strain CL Brener dispersed ge...	40	3.8
24	ref\|XM_815643.1\| Trypanosoma cruzi strain CL Brener dispersed ge...	40	3.8
25	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	3.8
26	emb\|AL939121.1\|SCO939121 Streptomyces coelicolor A3(2) complete ...	40	3.8
27	gb\|AC087114.7\| Mus musculus Strain C57BL6/J Chromosome 10 RP23-3...	40	3.8
28	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	3.8
29	gb\|CP000011.2\| Burkholderia mallei ATCC 23344 chromosome 2, comp...	40	3.8
30	gb\|AY884301.1\| Takifugu rubripes cytospin A mRNA, complete cds	40	3.8
31	gb\|AC117640.14\| Mus musculus chromosome 5, clone RP23-228I1, com...	40	3.8

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                            
Query: 186      gccatgagagacctccacctcccgctgaaccagacccagagggtccgcctcgaggccgcg 245
                |||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 26014697 gccatgagggacctccagctctcgctgaaccagacccagagggtgcgcctcgaggccgcg 26014638

                                                   
Query: 246      ctccacgagctccagaccctcgcccccgcggccgc 280
                |||||||||||||||||| |||||||||| |||||
Sbjct: 26014637 ctccacgagctccagaccgtcgcccccgccgccgc 26014603



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 74       tgggcaggttttactagggtttttgc 99
                ||||||||||||||||||||||||||
Sbjct: 26014813 tgggcaggttttactagggtttttgc 26014788



 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 236      cgaggccgcgctccacgagct 256
                |||||||||||||||||||||
Sbjct: 15164411 cgaggccgcgctccacgagct 15164431

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>dbj|AK102988.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116C14, full
           insert sequence
          Length = 1432

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                       
Query: 186 gccatgagagacctccacctcccgctgaaccagacccagagggtccgcctcgaggccgcg 245
           |||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 192 gccatgagggacctccagctctcgctgaaccagacccagagggtgcgcctcgaggccgcg 251

                                              
Query: 246 ctccacgagctccagaccctcgcccccgcggccgc 280
           |||||||||||||||||| |||||||||| |||||
Sbjct: 252 ctccacgagctccagaccgtcgcccccgccgccgc 286



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 74  tgggcaggttttactagggtttttgc 99
           ||||||||||||||||||||||||||
Sbjct: 76  tgggcaggttttactagggtttttgc 101

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>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
             complete sequence
          Length = 163039

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                         
Query: 186   gccatgagagacctccacctcccgctgaaccagacccagagggtccgcctcgaggccgcg 245
             |||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 49024 gccatgagggacctccagctctcgctgaaccagacccagagggtgcgcctcgaggccgcg 48965

                                                
Query: 246   ctccacgagctccagaccctcgcccccgcggccgc 280
             |||||||||||||||||| |||||||||| |||||
Sbjct: 48964 ctccacgagctccagaccgtcgcccccgccgccgc 48930



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 74    tgggcaggttttactagggtttttgc 99
             ||||||||||||||||||||||||||
Sbjct: 49140 tgggcaggttttactagggtttttgc 49115

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>ref|XM_473208.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 948

 Score =  135 bits (68), Expect = 9e-29
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                       
Query: 189 atgagagacctccacctcccgctgaaccagacccagagggtccgcctcgaggccgcgctc 248
           ||||| |||||||| ||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1   atgagggacctccagctctcgctgaaccagacccagagggtgcgcctcgaggccgcgctc 60

                                           
Query: 249 cacgagctccagaccctcgcccccgcggccgc 280
           ||||||||||||||| |||||||||| |||||
Sbjct: 61  cacgagctccagaccgtcgcccccgccgccgc 92

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>dbj|AK073454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042J02, full
            insert sequence
          Length = 3038

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                      
Query: 239  ggccgcgctccacgagctccagaccctcgcccccgcggccgc 280
            ||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 1851 ggccgcgctccacgagctccagaccgtcgcccccgccgccgc 1892

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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
               sequence
          Length = 2105742

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 130     cgccacccgccgacgcatccctccttc 156
               ||||||||||||||||||||| |||||
Sbjct: 1294938 cgccacccgccgacgcatcccgccttc 1294964

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>ref|XM_569677.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNC04260) partial mRNA
          Length = 959

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 130 cgccacccgccgacgcatccctccttc 156
           ||||||||||||||||||||| |||||
Sbjct: 599 cgccacccgccgacgcatcccgccttc 625

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>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome
          Length = 195859

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 106   ccgccgtcgatcgccgccgacc 127
             ||||||||||||||||||||||
Sbjct: 55596 ccgccgtcgatcgccgccgacc 55617

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>ref|XM_471860.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1479

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 cgaggccgcgctccacgagct 256
           |||||||||||||||||||||
Sbjct: 493 cgaggccgcgctccacgagct 473

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>ref|XM_540418.2| PREDICTED: Canis familiaris similar to Ezrin-radixin-moesin binding
           phosphoprotein 50 (EBP50) (Na(+)/H(+) exchange
           regulatory cofactor NHE-RF) (NHERF-1) (Regulatory
           cofactor of Na(+)/H(+) exchanger) (Sodium-hydrogen
           exchanger regulatory factor 1) (Solute carrier family 9
           isof... (LOC483299), mRNA
          Length = 1515

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 266 cgcccccgcggccgcgtccgc 286
           |||||||||||||||||||||
Sbjct: 441 cgcccccgcggccgcgtccgc 421

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>emb|AL731634.4|OSJN00276 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033P05,
             complete sequence
          Length = 120635

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   cgaggccgcgctccacgagct 256
             |||||||||||||||||||||
Sbjct: 57306 cgaggccgcgctccacgagct 57326

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>gb|AC116667.2| Homo sapiens chromosome 16 clone RP11-346C20, complete sequence
          Length = 156100

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 117    cgccgccgacccccgccacccgccg 141
              |||||||||||||||||| ||||||
Sbjct: 149778 cgccgccgacccccgccagccgccg 149802

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>gb|L32833.1|HUMZFHPA Homo sapiens zinc finger homeodomain protein (ATBF1-B) mRNA, 5' end
          Length = 1219

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 117  cgccgccgacccccgccacccgccg 141
            |||||||||||||||||| ||||||
Sbjct: 991  cgccgccgacccccgccagccgccg 1015

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>gb|AC153727.6| Mus musculus BAC clone RP23-354L15 from chromosome 12, complete
             sequence
          Length = 202733

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   ctccacgagctccagaccctcgcc 269
             |||||| |||||||||||||||||
Sbjct: 41140 ctccaccagctccagaccctcgcc 41117

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>gb|AC138671.16| Mus musculus chromosome 5, clone RP23-443N7, complete sequence
          Length = 196443

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   ctccacgagctccagaccctcgcc 269
             |||||| |||||||||||||||||
Sbjct: 74693 ctccaccagctccagaccctcgcc 74716

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>gb|AC161120.5| Mus musculus BAC clone RP23-84A2 from chromosome 10, complete sequence
          Length = 214638

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 132    ccacccgccgacgcatccctcctt 155
              |||||||||||| |||||||||||
Sbjct: 111860 ccacccgccgacccatccctcctt 111883

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>gb|AC151846.3| Mus musculus BAC clone RP23-13B8 from chromosome 10, complete sequence
          Length = 252639

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 132   ccacccgccgacgcatccctcctt 155
             |||||||||||| |||||||||||
Sbjct: 53547 ccacccgccgacccatccctcctt 53524

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>ref|XM_957341.1| Neurospora crassa OR74A hypothetical protein (NCU07918.1) partial
            mRNA
          Length = 2727

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 57   gacggtggtgggtggactgggcag 80
            ||||||| ||||||||||||||||
Sbjct: 1932 gacggtgttgggtggactgggcag 1955

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>ref|XM_328623.1| Neurospora crassa OR74A hypothetical protein (NCU07918.1) partial
            mRNA
          Length = 2727

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 57   gacggtggtgggtggactgggcag 80
            ||||||| ||||||||||||||||
Sbjct: 1932 gacggtgttgggtggactgggcag 1955

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>gb|AC136518.3| Mus musculus BAC clone RP23-304K22 from chromosome 16, complete
             sequence
          Length = 206486

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    tggtgggtggactgggcagg 81
             ||||||||||||||||||||
Sbjct: 98978 tggtgggtggactgggcagg 98959

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>ref|XM_809491.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053507643.50) partial mRNA
          Length = 10371

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 231  cgcctcgaggccgcgctccacgag 254
            |||| |||||||||||||||||||
Sbjct: 1842 cgccacgaggccgcgctccacgag 1819

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>ref|XM_811214.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053506613.130) partial mRNA
          Length = 10452

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  cgaggccgcgctccacgagc 255
            ||||||||||||||||||||
Sbjct: 1900 cgaggccgcgctccacgagc 1881

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>ref|XM_815311.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053503973.40) partial mRNA
          Length = 10335

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  tcgaggccgcgctccacgag 254
            ||||||||||||||||||||
Sbjct: 1901 tcgaggccgcgctccacgag 1882

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>ref|XM_815643.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053510275.130) partial mRNA
          Length = 10449

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  cgaggccgcgctccacgagc 255
            ||||||||||||||||||||
Sbjct: 1897 cgaggccgcgctccacgagc 1878

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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    ccgccgtcgatcgccgccga 125
              ||||||||||||||||||||
Sbjct: 849919 ccgccgtcgatcgccgccga 849900

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>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    cgcccccgcggccgcgtccg 285
              ||||||||||||||||||||
Sbjct: 149878 cgcccccgcggccgcgtccg 149859

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>gb|AC087114.7| Mus musculus Strain C57BL6/J Chromosome 10 RP23-309M23, complete sequence
          Length = 185825

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 132    ccacccgccgacgcatccctcctt 155
              |||||||||||| |||||||||||
Sbjct: 102755 ccacccgccgacccatccctcctt 102778

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 268     cccccgcggccgcgtccgcc 287
               ||||||||||||||||||||
Sbjct: 2795411 cccccgcggccgcgtccgcc 2795392

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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 113    cgatcgccgccgacccccgccacc 136
              |||||||||| |||||||||||||
Sbjct: 991449 cgatcgccgcagacccccgccacc 991426

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>gb|AY884301.1| Takifugu rubripes cytospin A mRNA, complete cds
          Length = 3705

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  tcgaggccgcgctccacgag 254
            ||||||||||||||||||||
Sbjct: 1677 tcgaggccgcgctccacgag 1696

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>gb|AC117640.14| Mus musculus chromosome 5, clone RP23-228I1, complete sequence
          Length = 138354

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 246    ctccacgagctccagaccctcgcc 269
              |||||| |||||||||||||||||
Sbjct: 122331 ctccaccagctccagaccctcgcc 122308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,238,867
Number of Sequences: 3902068
Number of extensions: 2238867
Number of successful extensions: 72352
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71992
Number of HSP's gapped (non-prelim): 360
length of query: 287
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 265
effective length of database: 17,147,199,772
effective search space: 4544007939580
effective search space used: 4544007939580
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result