>KDSA_DESVH (P61654) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)|
           (Phospho-2-dehydro-3-deoxyoctonate aldolase)
           (3-deoxy-D-manno-octulosonic acid 8-phosphate
           synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
           synthase) (KDOPS)
          Length = 273

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
 Frame = +1

Query: 271 RNPPPLRGPGIDRLVDCSC---LPGHANAGSGRSAGRVLLLPRAAVMASL---------- 411
           R+ P ++G G+  + D +    LPG     SG     V +L RAAV A +          
Sbjct: 180 RSIPTMQGFGVPVVFDATHSVQLPGGLGGSSGGERRHVPVLARAAVAAGVDGVFLECHPD 239

Query: 412 -NLAACRGPRRCPLSSLP 462
            + A C GP   PL  LP
Sbjct: 240 PDKALCDGPNSWPLDRLP 257

>KCNKD_RAT (Q9ERS0) Potassium channel subfamily K member 13 (Tandem pore|
           domain halothane-inhibited potassium channel 1) (THIK-1)
          Length = 405

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = +1

Query: 319 CSCLPGHANAGSGR---SAGRVL--LLPRAAVMASLNLA 420
           CSC PGH N  + R    AG +L  LL  AAV ++L LA
Sbjct: 6   CSCSPGHLNEDNARFLLLAGLILLYLLGGAAVFSALELA 44

>CP3A2_RAT (P05183) Cytochrome P450 3A2 (EC 1.14.14.1) (CYPIIIA2) (P450-PCN2)|
           (P450/6-beta-A) (Testosterone 6-beta-hydroxylase)
          Length = 504

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 396 RHGVFESRGLPRPTPMP 446
           RHG+F+ +G+P P P+P
Sbjct: 29  RHGIFKKQGIPGPKPLP 45

>UL06_HHV2H (P89429) Virion protein UL6|
          Length = 678

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 444 ASAWAAAGREIQRRHDGSPGQEEDAAGGPAGSGIGVPWEA---RAIHQAIDPRSS 289
           A+   A  RE++R   G+  +E+ AA   AG G G P EA   RA +  ID   S
Sbjct: 444 ATQLQARDRELRRAQAGALEREQRAADRAAGGGAGRPAEADLLRADYDIIDVSKS 498

>OXR1_RAT (Q4V8B0) Oxidation resistance protein 1 (Protein C7)|
          Length = 758

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 328 LPGHANAGSGRSAGRVLLLPRAAVMASLNLAACRGPR 438
           +P H NA SGRS+  V  L     ++SL +A   G +
Sbjct: 302 VPDHTNANSGRSSSEVGALSHETGLSSLEIATKEGDK 338

>CP341_MOUSE (Q9JMA7) Cytochrome P450 3A41 (EC 1.14.14.1)|
          Length = 504

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 399 HGVFESRGLPRPTPMP 446
           HG+F+ +G+P PTP+P
Sbjct: 30  HGLFKKQGIPGPTPLP 45

>SRGP1_HUMAN (Q7Z6B7) SLIT-ROBO Rho GTPase-activating protein 1 (srGAP1)|
           (Rho-GTPase-activating protein 13)
          Length = 1085

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +1

Query: 229 PDSTSGVTRKQGESRNPPPLRGPGIDRLVDCSCLPGHANAGSGRSAG 369
           PD      RK+GE   PPP+R PG      C   P HA + S    G
Sbjct: 841 PDGYLARQRKRGEP--PPPVRRPGRTSDGHCPLHPPHALSNSSVDLG 885

>LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology|
           domain-containing protein 4 (Leucine-rich neuronal
           protein)
          Length = 683

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -2

Query: 447 RASAWAAAGREIQRRHDGSPGQEEDAAGGPAGSGIGVP 334
           RA    AA    Q  H+GSP      AG  AG G   P
Sbjct: 439 RAVVGGAAAVSTQAMHNGSPKSSASQAGAAAGQGAPAP 476

>NLTP1_BRANA (Q42614) Nonspecific lipid-transfer protein 1 precursor (LTP 1)|
          Length = 117

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +1

Query: 241 SGVTRKQGESRNPPPLRGPGIDRLVDCSCLPGHANAGSGRSAGRVLLLPRA 393
           +GVT     +R  P       DR   C CL G ANA    +A R   LP+A
Sbjct: 55  TGVTNLNNMARTTP-------DRQQACRCLVGAANAFPTLNAARAAGLPKA 98

>CP3AC_CANFA (P24463) Cytochrome P450 3A12 (EC 1.14.14.1) (CYPIIIA12)|
           (P450-PBD-1)
          Length = 503

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 399 HGVFESRGLPRPTPMP 446
           HG+F   G+P PTP+P
Sbjct: 30  HGIFRKLGIPGPTPLP 45

>KCNKD_MOUSE (Q8R1P5) Potassium channel subfamily K member 13 (Tandem pore|
           domain halothane-inhibited potassium channel 1) (THIK-1)
          Length = 405

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +1

Query: 319 CSCLPGHANAGSGR---SAGRVL--LLPRAAVMASLNLA 420
           C C PGH N  + R    AG +L  LL  AAV ++L LA
Sbjct: 6   CGCSPGHLNEDNARFLLLAGLILLYLLGGAAVFSALELA 44

>PEBPL_MOUSE (Q9D9G2) PEBP family protein precursor|
          Length = 242

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -2

Query: 456 RTQRASAWAAAGREIQRRHDGSPGQEEDAAGGPAGSGIG 340
           R   A  W       +   +G PG E+   G P GSG G
Sbjct: 13  RLLAAGLWVGLSLTAESIEEGKPGGEKPGGGKPGGSGRG 51

>GBX1_MOUSE (P82976) Homeobox protein GBX-1 (Gastrulation and brain-specific|
           homeobox protein 1)
          Length = 418

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = -2

Query: 471 LRPRQRTQRASAWAAAGREIQRRHDGSPGQEEDAAGGPAGSG--IGVPWEARAIHQAIDP 298
           L PR R++   +   A     RR  GS  Q     G P GSG   G P  A +I   I P
Sbjct: 38  LGPRARSEPCVSARGA-----RRGPGSAMQRAAGGGAPGGSGGSSGGPGAAFSIDSLIGP 92

Query: 297 RSSQGGRVS*FPLFPGHP 244
              + G +    L+ G+P
Sbjct: 93  PPPRSGHL----LYTGYP 106

>CP3A6_RABIT (P11707) Cytochrome P450 3A6 (EC 1.14.14.1) (CYPIIIA6) (P450-3C)|
          Length = 501

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 399 HGVFESRGLPRPTPMP 446
           HG+F+  G+P PTP+P
Sbjct: 28  HGLFKKMGIPGPTPLP 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,664,617
Number of Sequences: 219361
Number of extensions: 1137690
Number of successful extensions: 3952
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3942
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)