ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast43b06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF532104.1|AF532104S1 Aegilops tauschii strain TA1649 cosmid 69-7-1 Lr21 gene, complete cds; and unknown gene Length = 27960 Score = 109 bits (55), Expect = 7e-21 Identities = 82/91 (90%) Strand = Plus / Plus Query: 295 ggcgagcccgacgaggtggtcgagctcagcctcggcctgtccctgggcggctgcttcggc 354 ||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 21337 ggcgaacccgacgaggtggtcgagctcagcctgggcctatccctaggcggctgcttcggt 21396 Query: 355 gccaactccggccgggatgccaagaagccgc 385 ||||||||| |||| || |||||||| |||| Sbjct: 21397 gccaactccagccgagacgccaagaatccgc 21427
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 219 catggcgtcgagggacttcttgggcaggttcggcggcg 256 ||||||||||||||||||||||||| ||||||||||| Sbjct: 17262006 catggcgtcgagggacttcttgggcgtgttcggcggcg 17262043 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 ggcggcgccggcgagcccgacgag 309 ||||||| |||||||||||||||| Sbjct: 14285402 ggcggcggcggcgagcccgacgag 14285425
>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete sequence Length = 115326 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 219 catggcgtcgagggacttcttgggcaggttcggcggcg 256 ||||||||||||||||||||||||| ||||||||||| Sbjct: 94750 catggcgtcgagggacttcttgggcgtgttcggcggcg 94787
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 219 catggcgtcgagggacttcttgggcaggttcggcggcg 256 ||||||||||||||||||||||||| ||||||||||| Sbjct: 17255547 catggcgtcgagggacttcttgggcgtgttcggcggcg 17255584 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 ggcggcgccggcgagcccgacgag 309 ||||||| |||||||||||||||| Sbjct: 14280377 ggcggcggcggcgagcccgacgag 14280400
>dbj|AK119969.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-E02, full insert sequence Length = 1401 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 219 catggcgtcgagggacttcttgggcaggttcggcggcg 256 ||||||||||||||||||||||||| ||||||||||| Sbjct: 341 catggcgtcgagggacttcttgggcgtgttcggcggcg 378
>dbj|AK073482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043P22, full insert sequence Length = 1354 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 219 catggcgtcgagggacttcttgggcaggttcggcggcg 256 ||||||||||||||||||||||||| ||||||||||| Sbjct: 277 catggcgtcgagggacttcttgggcgtgttcggcggcg 314
>ref|XM_468725.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1152 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 220 atggcgtcgagggacttcttgggcaggttcggcggcg 256 |||||||||||||||||||||||| ||||||||||| Sbjct: 1 atggcgtcgagggacttcttgggcgtgttcggcggcg 37
>ref|XM_479067.1| Oryza sativa (japonica cultivar-group), mRNA Length = 960 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Plus Query: 222 ggcgtcgagggacttcttgggcaggttcggcgg 254 |||||||||||| ||||||||| |||||||||| Sbjct: 6 ggcgtcgagggatttcttgggcgggttcggcgg 38 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Plus Query: 314 tcgagctcagcctcggcctgtccctgggcggctgcttcggcgcc 357 ||||||||||| | || ||||| |||||||| |||||||||||| Sbjct: 95 tcgagctcagcttggggctgtcgctgggcggttgcttcggcgcc 138
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Minus Query: 222 ggcgtcgagggacttcttgggcaggttcggcgg 254 |||||||||||| ||||||||| |||||||||| Sbjct: 24582269 ggcgtcgagggatttcttgggcgggttcggcgg 24582237 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Minus Query: 314 tcgagctcagcctcggcctgtccctgggcggctgcttcggcgcc 357 ||||||||||| | || ||||| |||||||| |||||||||||| Sbjct: 24582180 tcgagctcagcttggggctgtcgctgggcggttgcttcggcgcc 24582137
>dbj|AP005809.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0039M16 Length = 133229 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Minus Query: 222 ggcgtcgagggacttcttgggcaggttcggcgg 254 |||||||||||| ||||||||| |||||||||| Sbjct: 38336 ggcgtcgagggatttcttgggcgggttcggcgg 38304 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Minus Query: 314 tcgagctcagcctcggcctgtccctgggcggctgcttcggcgcc 357 ||||||||||| | || ||||| |||||||| |||||||||||| Sbjct: 38247 tcgagctcagcttggggctgtcgctgggcggttgcttcggcgcc 38204
>dbj|AP005807.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0018H10 Length = 135879 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Minus Query: 222 ggcgtcgagggacttcttgggcaggttcggcgg 254 |||||||||||| ||||||||| |||||||||| Sbjct: 75563 ggcgtcgagggatttcttgggcgggttcggcgg 75531 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Minus Query: 314 tcgagctcagcctcggcctgtccctgggcggctgcttcggcgcc 357 ||||||||||| | || ||||| |||||||| |||||||||||| Sbjct: 75474 tcgagctcagcttggggctgtcgctgggcggttgcttcggcgcc 75431
>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02, complete sequence Length = 147407 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 aaggcggggggcggcgccggcg 298 |||||||||||||||||||||| Sbjct: 4539 aaggcggggggcggcgccggcg 4560
>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052E20, complete sequence Length = 162434 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 aaggcggggggcggcgccggcg 298 |||||||||||||||||||||| Sbjct: 46072 aaggcggggggcggcgccggcg 46093
>dbj|AB097428.1| Oryza sativa (japonica cultivar-group) transposon AnacA1(AOX) DNA, complete sequence Length = 2105 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 aaggcggggggcggcgccggcg 298 |||||||||||||||||||||| Sbjct: 439 aaggcggggggcggcgccggcg 460
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 aaggcggggggcggcgccggcg 298 |||||||||||||||||||||| Sbjct: 22942059 aaggcggggggcggcgccggcg 22942080 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 ggcggggggcggcgccggcgagcccgacg 307 |||||| |||||||||| ||||||||||| Sbjct: 22574502 ggcgggcggcggcgccgacgagcccgacg 22574530
>ref|XM_475381.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1377 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 ggcggggggcggcgccggcgagcccgacg 307 |||||| |||||||||| ||||||||||| Sbjct: 312 ggcgggcggcggcgccgacgagcccgacg 340
>gb|AY658517.1| Synthetic construct Peudomonas aeruginosa clone FLH034921.01F PA0480 gene, partial cds Length = 798 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 cctcggcctgtccctgggcgg 344 ||||||||||||||||||||| Sbjct: 285 cctcggcctgtccctgggcgg 305
>ref|XM_954184.1| Neurospora crassa OR74A hypothetical protein (NCU06930.1) partial mRNA Length = 6666 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 tcagcctcggcctgtccctgg 340 ||||||||||||||||||||| Sbjct: 3069 tcagcctcggcctgtccctgg 3089
>ref|XM_327215.1| Neurospora crassa OR74A hypothetical protein (NCU06930.1) partial mRNA Length = 6666 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 tcagcctcggcctgtccctgg 340 ||||||||||||||||||||| Sbjct: 3069 tcagcctcggcctgtccctgg 3089
>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02, complete sequence Length = 93826 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 ggcggggggcggcgccggcgagcccgacg 307 |||||| |||||||||| ||||||||||| Sbjct: 69552 ggcgggcggcggcgccgacgagcccgacg 69580
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 gcgttcctgagaacctggccgtcct 136 ||||||| ||||||||||||||||| Sbjct: 2860361 gcgttcccgagaacctggccgtcct 2860385
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 tgccgggcatggcgtcgaggg 232 ||||||||||||||||||||| Sbjct: 3401120 tgccgggcatggcgtcgaggg 3401140
>gb|AE004485.1| Pseudomonas aeruginosa PAO1, section 46 of 529 of the complete genome Length = 12072 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 cctcggcctgtccctgggcgg 344 ||||||||||||||||||||| Sbjct: 8665 cctcggcctgtccctgggcgg 8685
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gttcggcggcgagaagggcg 265 |||||||||||||||||||| Sbjct: 442469 gttcggcggcgagaagggcg 442488
>ref|NM_193331.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2550 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 ggcggggggcggcgccggcg 298 |||||||||||||||||||| Sbjct: 130 ggcggggggcggcgccggcg 149
>ref|XM_366226.1| Magnaporthe grisea 70-15 hypothetical protein (MG10445.4) partial mRNA Length = 2382 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ccctgggcggctgcttcggc 354 |||||||||||||||||||| Sbjct: 554 ccctgggcggctgcttcggc 573
>gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 182933 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 tgtgatgttctttcctctgg 59 |||||||||||||||||||| Sbjct: 149939 tgtgatgttctttcctctgg 149958
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 ggcggggggcggcgccggcg 298 |||||||||||||||||||| Sbjct: 60961 ggcggggggcggcgccggcg 60980
>gb|AC142499.9| Mus musculus strain C57BL/6J clone rp23-333m15, complete sequence Length = 215706 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 caggaggggttggcgtctgtttcg 179 ||||||||||||||||| |||||| Sbjct: 58230 caggaggggttggcgtcagtttcg 58207
>gb|AY162186.1| Triticum monococcum extracellular invertase (exin1) mRNA, complete cds Length = 2279 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 gcggcgagaagggcgcgtcg 270 |||||||||||||||||||| Sbjct: 1339 gcggcgagaagggcgcgtcg 1358
>gb|AF521878.1| Streptomyces narbonensis desosamine biosynthetic gene cluster, partial sequence Length = 17665 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cggcgagcccgacgaggtgg 313 |||||||||||||||||||| Sbjct: 12132 cggcgagcccgacgaggtgg 12151
>gb|AC007961.32| Mus musculus strain 129S6/SvEvTac clone rp21-594l4 map 10, complete sequence Length = 180585 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 caggaggggttggcgtctgtttcg 179 ||||||||||||||||| |||||| Sbjct: 89059 caggaggggttggcgtcagtttcg 89036
>gb|AF320254.1|AF320254 Azoarcus evansii aerobic 2-aminobenzoate metabolism type II operon, complete sequence Length = 11010 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cggcgccggcgagcccgacg 307 |||||||||||||||||||| Sbjct: 4297 cggcgccggcgagcccgacg 4278
>gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201259 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 tgtgatgttctttcctctgg 59 |||||||||||||||||||| Sbjct: 39802 tgtgatgttctttcctctgg 39821
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 ggcggcgccggcgagcccgacgag 309 ||||||| |||||||||||||||| Sbjct: 34631 ggcggcggcggcgagcccgacgag 34654
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 ggcggcgccggcgagcccgacgag 309 ||||||| |||||||||||||||| Sbjct: 96790 ggcggcggcggcgagcccgacgag 96813
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ggcggcgccggcgagcccga 305 |||||||||||||||||||| Sbjct: 5238018 ggcggcgccggcgagcccga 5238037 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 cggcgccggcgagcccgacgaggt 311 ||||||||||| |||||||||||| Sbjct: 11502 cggcgccggcgtgcccgacgaggt 11479
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ggggggcggcgccggcgagc 301 |||||||||||||||||||| Sbjct: 338469 ggggggcggcgccggcgagc 338488
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 ggcggggggcggcgccggcg 298 |||||||||||||||||||| Sbjct: 20188368 ggcggggggcggcgccggcg 20188387
>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0051H17 Length = 187471 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 ggcggggggcggcgccggcg 298 |||||||||||||||||||| Sbjct: 94746 ggcggggggcggcgccggcg 94765
>gb|AC013267.11| Homo sapiens BAC clone RP11-284O8 from 2, complete sequence Length = 170378 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 271 tcggacaaggcggggggcggcgccggcg 298 ||||| |||||||| ||||||||||||| Sbjct: 91843 tcggagaaggcgggaggcggcgccggcg 91870
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gcccgacgaggtggtcgagc 319 |||||||||||||||||||| Sbjct: 1594184 gcccgacgaggtggtcgagc 1594165
>ref|XM_345442.2| PREDICTED: Rattus norvegicus otoraplin (predicted) (Otor_predicted), mRNA Length = 606 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ctctctgtgccgggcatggc 224 |||||||||||||||||||| Sbjct: 41 ctctctgtgccgggcatggc 60
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 tcggcggcgagaagggcgcg 267 |||||||||||||||||||| Sbjct: 6759983 tcggcggcgagaagggcgcg 6760002 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 tgccgggcatggcgtcgagg 231 |||||||||||||||||||| Sbjct: 2385930 tgccgggcatggcgtcgagg 2385949
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 tcggcctgtccctgggcggc 345 |||||||||||||||||||| Sbjct: 2441380 tcggcctgtccctgggcggc 2441399
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 cttgggcaggttcggcggcg 256 |||||||||||||||||||| Sbjct: 4082065 cttgggcaggttcggcggcg 4082046
>gb|AF204395.1|AF204395 Mus musculus macrophage migration inhibitory factor (MIF) gene, 5' flanking region and partial cds Length = 5966 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 caggaggggttggcgtctgtttcg 179 ||||||||||||||||| |||||| Sbjct: 145 caggaggggttggcgtcagtttcg 122
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gttcggcggcgagaagggcg 265 |||||||||||||||||||| Sbjct: 2482673 gttcggcggcgagaagggcg 2482692
>emb|CR936258.1| Natronomonas pharaonis DSM 2160 plasmid PL131 complete genome Length = 130989 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 ggcggcgagaagggcgcgtcgtcg 273 ||||||||| |||||||||||||| Sbjct: 36344 ggcggcgaggagggcgcgtcgtcg 36321
>emb|AL591478.19| Mouse DNA sequence from clone RP23-140D14 on chromosome 2, complete sequence Length = 236979 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tgagaacctggccgtccttg 138 |||||||||||||||||||| Sbjct: 160467 tgagaacctggccgtccttg 160448
>emb|AL606932.10| Mouse DNA sequence from clone RP23-247I20 on chromosome 4, complete sequence Length = 188633 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ggcggggggcggcgccggcg 298 |||||||||||||||||||| Sbjct: 158174 ggcggggggcggcgccggcg 158155 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,479,768 Number of Sequences: 3902068 Number of extensions: 2479768 Number of successful extensions: 55527 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53900 Number of HSP's gapped (non-prelim): 1627 length of query: 385 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 363 effective length of database: 17,147,199,772 effective search space: 6224433517236 effective search space used: 6224433517236 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
