ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast43a03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 202 bits (102), Expect = 8e-49 Identities = 173/197 (87%) Strand = Plus / Minus Query: 282 cggcggcggcggcatcctggagagcgtgcaggagggcgcanagtccctggcgagcgcggt 341 ||||||||||||||||||||||||||||||||||||||| |||| | | |||||| || Sbjct: 11673508 cggcggcggcggcatcctggagagcgtgcaggagggcgccaagtcgttcgtgagcgccgt 11673449 Query: 342 gggccgcacgttcggcggcgccaaggacaccgccgcagacaagacctaccaggcggcgga 401 || ||||||||||||||||| | |||||||||||| || ||||||| |||| ||||||| Sbjct: 11673448 cgggcgcacgttcggcggcgcgagggacaccgccgcggagaagacctcccagacggcgga 11673389 Query: 402 cgccaccgggaacaagctgggcgagtacaaggactacaccgccgagaaggccaaggagac 461 ||||||| || ||||||| |||||||||||||||||||||||||| |||||| ||||| Sbjct: 11673388 cgccacccgggacaagctcggcgagtacaaggactacaccgccgacaaggcccgcgagac 11673329 Query: 462 taacgacagcctcgcgc 478 ||||||||| |||||| Sbjct: 11673328 caacgacagcgtcgcgc 11673312 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 395 cggcggacgccaccgggaacaagctgggcgagtacaaggactacaccgccga 446 ||||||||||| || | ||||||| |||||||||||||||||||||||||| Sbjct: 11673296 cggcggacgcctcccgtgacaagctcggcgagtacaaggactacaccgccga 11673245 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 162 ggacgagcgggtaatgcaggcggagatggacgcgcgacgcgcggcggacgagatctcgcg 221 ||||||||| || |||||||||||| ||||||| || || |||||||||||| | || Sbjct: 11673625 ggacgagcgcgtcatgcaggcggaggtggacgcccggtcggccgcggacgagatcgcccg 11673566 Query: 222 cgcccgcgcggaccg 236 ||||||||| ||||| Sbjct: 11673565 cgcccgcgccgaccg 11673551 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 411 gaacaagctgggcgagtacaaggac 435 ||||||||||||||||||||||||| Sbjct: 11673181 gaacaagctgggcgagtacaaggac 11673157 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 190 gacgcgcgacgcgcggcggacgagatctcgcg 221 |||||||| ||||||||||| |||||| |||| Sbjct: 11673663 gacgcgcggcgcgcggcggaggagatcgcgcg 11673632 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 acacactacagccaacactacagc 31 |||||||||||||||||| ||||| Sbjct: 5973023 acacactacagccaacacgacagc 5973046
>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0093J20, from chromosome 3, complete sequence Length = 148635 Score = 202 bits (102), Expect = 8e-49 Identities = 173/197 (87%) Strand = Plus / Minus Query: 282 cggcggcggcggcatcctggagagcgtgcaggagggcgcanagtccctggcgagcgcggt 341 ||||||||||||||||||||||||||||||||||||||| |||| | | |||||| || Sbjct: 62603 cggcggcggcggcatcctggagagcgtgcaggagggcgccaagtcgttcgtgagcgccgt 62544 Query: 342 gggccgcacgttcggcggcgccaaggacaccgccgcagacaagacctaccaggcggcgga 401 || ||||||||||||||||| | |||||||||||| || ||||||| |||| ||||||| Sbjct: 62543 cgggcgcacgttcggcggcgcgagggacaccgccgcggagaagacctcccagacggcgga 62484 Query: 402 cgccaccgggaacaagctgggcgagtacaaggactacaccgccgagaaggccaaggagac 461 ||||||| || ||||||| |||||||||||||||||||||||||| |||||| ||||| Sbjct: 62483 cgccacccgggacaagctcggcgagtacaaggactacaccgccgacaaggcccgcgagac 62424 Query: 462 taacgacagcctcgcgc 478 ||||||||| |||||| Sbjct: 62423 caacgacagcgtcgcgc 62407 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 395 cggcggacgccaccgggaacaagctgggcgagtacaaggactacaccgccga 446 ||||||||||| || | ||||||| |||||||||||||||||||||||||| Sbjct: 62391 cggcggacgcctcccgtgacaagctcggcgagtacaaggactacaccgccga 62340 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 162 ggacgagcgggtaatgcaggcggagatggacgcgcgacgcgcggcggacgagatctcgcg 221 ||||||||| || |||||||||||| ||||||| || || |||||||||||| | || Sbjct: 62720 ggacgagcgcgtcatgcaggcggaggtggacgcccggtcggccgcggacgagatcgcccg 62661 Query: 222 cgcccgcgcggaccg 236 ||||||||| ||||| Sbjct: 62660 cgcccgcgccgaccg 62646 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 411 gaacaagctgggcgagtacaaggac 435 ||||||||||||||||||||||||| Sbjct: 62276 gaacaagctgggcgagtacaaggac 62252 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 190 gacgcgcgacgcgcggcggacgagatctcgcg 221 |||||||| ||||||||||| |||||| |||| Sbjct: 62758 gacgcgcggcgcgcggcggaggagatcgcgcg 62727
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 202 bits (102), Expect = 8e-49 Identities = 173/197 (87%) Strand = Plus / Minus Query: 282 cggcggcggcggcatcctggagagcgtgcaggagggcgcanagtccctggcgagcgcggt 341 ||||||||||||||||||||||||||||||||||||||| |||| | | |||||| || Sbjct: 11670271 cggcggcggcggcatcctggagagcgtgcaggagggcgccaagtcgttcgtgagcgccgt 11670212 Query: 342 gggccgcacgttcggcggcgccaaggacaccgccgcagacaagacctaccaggcggcgga 401 || ||||||||||||||||| | |||||||||||| || ||||||| |||| ||||||| Sbjct: 11670211 cgggcgcacgttcggcggcgcgagggacaccgccgcggagaagacctcccagacggcgga 11670152 Query: 402 cgccaccgggaacaagctgggcgagtacaaggactacaccgccgagaaggccaaggagac 461 ||||||| || ||||||| |||||||||||||||||||||||||| |||||| ||||| Sbjct: 11670151 cgccacccgggacaagctcggcgagtacaaggactacaccgccgacaaggcccgcgagac 11670092 Query: 462 taacgacagcctcgcgc 478 ||||||||| |||||| Sbjct: 11670091 caacgacagcgtcgcgc 11670075 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 395 cggcggacgccaccgggaacaagctgggcgagtacaaggactacaccgccga 446 ||||||||||| || | ||||||| |||||||||||||||||||||||||| Sbjct: 11670059 cggcggacgcctcccgtgacaagctcggcgagtacaaggactacaccgccga 11670008 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 162 ggacgagcgggtaatgcaggcggagatggacgcgcgacgcgcggcggacgagatctcgcg 221 ||||||||| || |||||||||||| ||||||| || || |||||||||||| | || Sbjct: 11670388 ggacgagcgcgtcatgcaggcggaggtggacgcccggtcggccgcggacgagatcgcccg 11670329 Query: 222 cgcccgcgcggaccg 236 ||||||||| ||||| Sbjct: 11670328 cgcccgcgccgaccg 11670314 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 411 gaacaagctgggcgagtacaaggac 435 ||||||||||||||||||||||||| Sbjct: 11669944 gaacaagctgggcgagtacaaggac 11669920 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 190 gacgcgcgacgcgcggcggacgagatctcgcg 221 |||||||| ||||||||||| |||||| |||| Sbjct: 11670426 gacgcgcggcgcgcggcggaggagatcgcgcg 11670395 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 acacactacagccaacactacagc 31 |||||||||||||||||| ||||| Sbjct: 5972236 acacactacagccaacacgacagc 5972259
>ref|XM_381192.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01016.1) partial mRNA Length = 603 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 429 caaggactacaccgccgagaaggccaaggaga 460 |||| ||| ||||||||||||||||||||||| Sbjct: 375 caagtacttcaccgccgagaaggccaaggaga 406
>gb|CP000354.1| Ralstonia metallidurans CH34 plasmid pMOL30, complete sequence Length = 233720 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 203 cggcggacgagatctcgcgcgcc 225 ||||||||||||||||||||||| Sbjct: 200651 cggcggacgagatctcgcgcgcc 200629
>emb|X71400.2|AECZCOP5R Ralstonia metallidurans CH34 plasmid pMOL30 Length = 233755 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 203 cggcggacgagatctcgcgcgcc 225 ||||||||||||||||||||||| Sbjct: 152921 cggcggacgagatctcgcgcgcc 152943
>gb|AC172859.1| Brassica rapa subsp. pekinensis clone KBrB023K01, complete sequence Length = 102061 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 46 gcaagttctagagaagttgaacc 68 ||||||||||||||||||||||| Sbjct: 32167 gcaagttctagagaagttgaacc 32145
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 204 ggcggacgagatctcgcgcgcc 225 |||||||||||||||||||||| Sbjct: 2588878 ggcggacgagatctcgcgcgcc 2588857
>gb|AC091672.11| Papio anubis clone rp41-367l20, complete sequence Length = 172406 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 280 cgcggcggcggcggcatcctgg 301 |||||||||||||||||||||| Sbjct: 136827 cgcggcggcggcggcatcctgg 136848
>emb|X16131.1|DCDC8 D. carota DC8 gene for an embryonic-specific 66kDa protein Length = 3761 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 421 ggcgagtacaaggactacaccgccgagaaggccaagga 458 ||||||||||||||||| | || |||||||||||||| Sbjct: 2383 ggcgagtacaaggactatgcggcggagaaggccaagga 2420
>gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic gene cluster, complete sequence Length = 113193 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 353 tcggcggcgccaaggacaccgccgc 377 |||||||||||| |||||||||||| Sbjct: 28794 tcggcggcgccacggacaccgccgc 28818
>ref|XM_361319.1| Magnaporthe grisea 70-15 hypothetical protein (MG03793.4) partial mRNA Length = 1020 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 caagctgggcgagtacaagga 434 ||||||||||||||||||||| Sbjct: 978 caagctgggcgagtacaagga 998
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 280 cgcggcggcggcggcatcctggaga 304 ||||||||| ||||||||||||||| Sbjct: 3974976 cgcggcggccgcggcatcctggaga 3974952 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 gatctcgcgcgcccgcgcggaccg 236 ||||| |||||||||||||||||| Sbjct: 3549956 gatcttgcgcgcccgcgcggaccg 3549933
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cgcggcggcggcggcatcctggaga 304 ||||||||| ||||||||||||||| Sbjct: 1195923 cgcggcggccgcggcatcctggaga 1195947
>gb|AE011981.1| Xanthomonas axonopodis pv. citri str. 306, section 359 of 469 of the complete genome Length = 10288 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 280 cgcggcggcggcggcatcctggaga 304 ||||||||| ||||||||||||||| Sbjct: 7743 cgcggcggccgcggcatcctggaga 7719
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cgcggcggcggcggcatcctggaga 304 ||||||||| ||||||||||||||| Sbjct: 549455 cgcggcggccgcggcatcctggaga 549479
>gb|AE004679.1| Pseudomonas aeruginosa PAO1, section 240 of 529 of the complete genome Length = 10042 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 250 ctgggcggcggtgcctacgtggagc 274 |||||||||||||||||| |||||| Sbjct: 5836 ctgggcggcggtgcctacctggagc 5812
>emb|Z18891.1|BPBP8GEN Betula pendula BP8 gene Length = 3160 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 421 ggcgagtacaaggactacaccgccgagaaggccaaggagac 461 ||||||||||||||||| | || |||||||| |||||||| Sbjct: 2235 ggcgagtacaaggactatgcggcggagaaggcaaaggagac 2275 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 gagtacaaggactacaccgccgagaagg 451 ||||||||||||||||| || ||||||| Sbjct: 2172 gagtacaaggactacacggcggagaagg 2199 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 424 gagtacaaggactacaccgccgagaaggccaaggag 459 ||||||||||||||| | || |||||||| |||||| Sbjct: 2040 gagtacaaggactacgcagcggagaaggcgaaggag 2075
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 cgcggcggcggcggcatcctggaga 304 ||||||||| ||||||||||||||| Sbjct: 1229468 cgcggcggccgcggcatcctggaga 1229492
>ref|XM_468168.1| Oryza sativa (japonica cultivar-group), mRNA Length = 922 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 acccacgcggcggcggcggc 294 |||||||||||||||||||| Sbjct: 133 acccacgcggcggcggcggc 152
>ref|NM_197214.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0078O01.13), mRNA Length = 631 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctg 300 |||||||||||||||||||| Sbjct: 108 gcggcggcggcggcatcctg 127
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gcgcgcccgcgcggaccggg 238 |||||||||||||||||||| Sbjct: 203558 gcgcgcccgcgcggaccggg 203577
>gb|AC011252.5| Drosophila melanogaster clone BACR23H21, complete sequence Length = 157965 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tacaaggactacaccgccga 446 |||||||||||||||||||| Sbjct: 40927 tacaaggactacaccgccga 40946
>ref|XM_960387.1| Neurospora crassa OR74A hypothetical protein (NCU02707.1) partial mRNA Length = 624 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 429 caaggactacaccgccgagaaggccaaggaga 460 |||| ||| ||||||||||||| ||||||||| Sbjct: 336 caagtacttcaccgccgagaagtccaaggaga 367
>ref|XM_331905.1| Neurospora crassa OR74A hypothetical protein (NCU02707.1) partial mRNA Length = 624 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 429 caaggactacaccgccgagaaggccaaggaga 460 |||| ||| ||||||||||||| ||||||||| Sbjct: 336 caagtacttcaccgccgagaagtccaaggaga 367
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 acgcgcgacgcgcggcggac 210 |||||||||||||||||||| Sbjct: 881004 acgcgcgacgcgcggcggac 881023
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gcgcgcccgcgcggaccggg 238 |||||||||||||||||||| Sbjct: 885861 gcgcgcccgcgcggaccggg 885880
>gb|AY532152.1| Phanerochaete chrysosporium strain BKM-1767 multicopper oxidase 4B-I13 splice variant (mco4) mRNA, complete cds, alternatively spliced Length = 1831 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cggcggcgccaaggacaccgccgc 377 ||||||||||| |||||||||||| Sbjct: 1208 cggcggcgccacggacaccgccgc 1231
>gb|AY532151.1| Phanerochaete chrysosporium strain BKM-1767 multicopper oxidase 4B-I5 splice variant (mco4) mRNA, complete cds, alternatively spliced Length = 1787 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cggcggcgccaaggacaccgccgc 377 ||||||||||| |||||||||||| Sbjct: 1219 cggcggcgccacggacaccgccgc 1242
>gb|AY532150.1| Phanerochaete chrysosporium strain BKM-1767 multicopper oxidase 4B (mco4) mRNA, complete cds Length = 1776 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cggcggcgccaaggacaccgccgc 377 ||||||||||| |||||||||||| Sbjct: 1208 cggcggcgccacggacaccgccgc 1231
>gb|AY532149.1| Phanerochaete chrysosporium strain BKM-1767 multicopper oxidase 4A (mco4) mRNA, complete cds Length = 1776 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cggcggcgccaaggacaccgccgc 377 ||||||||||| |||||||||||| Sbjct: 1208 cggcggcgccacggacaccgccgc 1231
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 ggcgcactgggcggcggtgc 263 |||||||||||||||||||| Sbjct: 3875087 ggcgcactgggcggcggtgc 3875068
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctg 300 |||||||||||||||||||| Sbjct: 139474 gcggcggcggcggcatcctg 139493
>emb|BX842635.1| Neurospora crassa DNA linkage group I BAC contig B12J7 Length = 94169 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 429 caaggactacaccgccgagaaggccaaggaga 460 |||| ||| ||||||||||||| ||||||||| Sbjct: 30497 caagtacttcaccgccgagaagtccaaggaga 30528
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 acgcgcgacgcgcggcggac 210 |||||||||||||||||||| Sbjct: 2199630 acgcgcgacgcgcggcggac 2199649
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gcgcgcccgcgcggaccggg 238 |||||||||||||||||||| Sbjct: 728246 gcgcgcccgcgcggaccggg 728265
>emb|BX538331.1|HSM806600 Homo sapiens mRNA; cDNA DKFZp686C12204 (from clone DKFZp686C12204) Length = 3514 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctggaga 304 |||||||||||||| ||||||||| Sbjct: 101 gcggcggcggcggcgtcctggaga 124
>gb|AY515315.1| Cyanophora paradoxa KCBP-like kinesis gene, partial cds Length = 2458 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 tcgcgcgcccgcgcggaccg 236 |||||||||||||||||||| Sbjct: 1520 tcgcgcgcccgcgcggaccg 1539
>gb|AE011940.1| Xanthomonas axonopodis pv. citri str. 306, section 318 of 469 of the complete genome Length = 11410 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 gatctcgcgcgcccgcgcggaccg 236 ||||| |||||||||||||||||| Sbjct: 2217 gatcttgcgcgcccgcgcggaccg 2194
>dbj|AK055030.1| Homo sapiens cDNA FLJ30468 fis, clone BRAWH1000007 Length = 2871 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctggaga 304 |||||||||||||| ||||||||| Sbjct: 128 gcggcggcggcggcgtcctggaga 151
>ref|NM_141343.1| Drosophila melanogaster CG14676-RA (CG14676), mRNA Length = 735 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tacaaggactacaccgccga 446 |||||||||||||||||||| Sbjct: 106 tacaaggactacaccgccga 125
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 cggcgccaaggacaccgccg 376 |||||||||||||||||||| Sbjct: 1617229 cggcgccaaggacaccgccg 1617210
>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02, complete sequence Length = 128535 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 acacactacagccaacactacagc 31 |||||||||||||||||| ||||| Sbjct: 122645 acacactacagccaacacgacagc 122668
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08, complete sequence Length = 111961 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 acacactacagccaacactacagc 31 |||||||||||||||||| ||||| Sbjct: 31558 acacactacagccaacacgacagc 31581
>ref|NM_015910.3| Homo sapiens hypothetical protein LOC51057 (LOC51057), mRNA Length = 3514 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctggaga 304 |||||||||||||| ||||||||| Sbjct: 101 gcggcggcggcggcgtcctggaga 124
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 acgcgcgacgcgcggcggac 210 |||||||||||||||||||| Sbjct: 1773076 acgcgcgacgcgcggcggac 1773095
>gb|BT022571.1| Drosophila melanogaster IP07793 full insert cDNA Length = 986 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tacaaggactacaccgccga 446 |||||||||||||||||||| Sbjct: 184 tacaaggactacaccgccga 203
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctg 300 |||||||||||||||||||| Sbjct: 18635663 gcggcggcggcggcatcctg 18635682
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctg 300 |||||||||||||||||||| Sbjct: 2221076 gcggcggcggcggcatcctg 2221095
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 acccacgcggcggcggcggc 294 |||||||||||||||||||| Sbjct: 33426643 acccacgcggcggcggcggc 33426662
>gb|AC016734.7| Homo sapiens BAC clone RP11-391A7 from 2, complete sequence Length = 218836 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 gcggcggcggcggcatcctggaga 304 |||||||||||||| ||||||||| Sbjct: 125303 gcggcggcggcggcgtcctggaga 125280
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tcggcggcgccaaggacacc 372 |||||||||||||||||||| Sbjct: 6091611 tcggcggcgccaaggacacc 6091592
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 acccacgcggcggcggcggc 294 |||||||||||||||||||| Sbjct: 1518 acccacgcggcggcggcggc 1537
>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1316_E06 Length = 110197 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 acccacgcggcggcggcggc 294 |||||||||||||||||||| Sbjct: 57262 acccacgcggcggcggcggc 57281
>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1351_C05 Length = 112465 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctg 300 |||||||||||||||||||| Sbjct: 88978 gcggcggcggcggcatcctg 88997
>dbj|AK107467.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-A12, full insert sequence Length = 921 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 acccacgcggcggcggcggc 294 |||||||||||||||||||| Sbjct: 133 acccacgcggcggcggcggc 152
>emb|Z55560.1|HS49E4R H.sapiens CpG island DNA genomic Mse1 fragment, clone 49e4, reverse read cpg49e4.rt1b Length = 230 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctggaga 304 |||||||||||||| ||||||||| Sbjct: 134 gcggcggcggcggcgtcctggaga 157
>emb|Z55559.1|HS49E4F H.sapiens CpG island DNA genomic Mse1 fragment, clone 49e4, forward read cpg49e4.ft1a Length = 238 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 gcggcggcggcggcatcctggaga 304 |||||||||||||| ||||||||| Sbjct: 219 gcggcggcggcggcgtcctggaga 196
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 ctacaccgccgagaaggcca 454 |||||||||||||||||||| Sbjct: 312442 ctacaccgccgagaaggcca 312423
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gcgcgcccgcgcggaccggg 238 |||||||||||||||||||| Sbjct: 33497 gcgcgcccgcgcggaccggg 33516
>dbj|AK063028.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C01, full insert sequence Length = 614 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctg 300 |||||||||||||||||||| Sbjct: 143 gcggcggcggcggcatcctg 162
>gb|AE003601.4| Drosophila melanogaster chromosome 3R, section 7 of 118 of the complete sequence Length = 305165 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tacaaggactacaccgccga 446 |||||||||||||||||||| Sbjct: 110760 tacaaggactacaccgccga 110779
>gb|DQ196430.1| Phaseolus vulgaris group 3 late embryogenesis abundant protein (LEA3) gene, complete cds Length = 2711 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 415 aagctgggcgagtacaaggactacaccgccgagaag 450 |||||||| ||||||||||| ||||| || |||||| Sbjct: 1292 aagctgggagagtacaaggattacactgcggagaag 1327
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 193 gcgcgacgcgcggcggacgagatctcgcgcgcccgc 228 |||||||||||| | | |||||||||||||| |||| Sbjct: 1833709 gcgcgacgcgcgtccgtcgagatctcgcgcggccgc 1833674
>gb|AE001826.1| Deinococcus radiodurans R1 plasmid MP1, complete sequence Length = 177466 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 cggcggcggcggcatcctgg 301 |||||||||||||||||||| Sbjct: 103847 cggcggcggcggcatcctgg 103866
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctg 300 |||||||||||||||||||| Sbjct: 18646516 gcggcggcggcggcatcctg 18646535
>emb|AL833623.1|HSM804936 Homo sapiens mRNA; cDNA DKFZp686K0473 (from clone DKFZp686K0473) Length = 3112 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 gcggcggcggcggcatcctggaga 304 |||||||||||||| ||||||||| Sbjct: 141 gcggcggcggcggcgtcctggaga 164
>gb|M81841.1|PSEHADDL Pseudomonas putida D-2-haloalkanoate dehalogenase (hadD) and L-2-haloalkanoate dehalogenase (hadL) genes, complete cds Length = 2387 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ggccgcacgttcggcggcgc 362 |||||||||||||||||||| Sbjct: 891 ggccgcacgttcggcggcgc 910 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,895,044 Number of Sequences: 3902068 Number of extensions: 2895044 Number of successful extensions: 196465 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 189740 Number of HSP's gapped (non-prelim): 6722 length of query: 479 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 457 effective length of database: 17,147,199,772 effective search space: 7836270295804 effective search space used: 7836270295804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
