ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast42h08 |
|---|---|
| Clone Library Name | barley_pub |
>FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400| Length = 980 Score = 33.5 bits (75), Expect = 0.22 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Frame = -2 Query: 426 PEPEPEPAGRSQRR---APPLSPRTARPLLPCGASGRELDDEGERGVAPKRAP 277 P P P GR APP +PRTARP P A DDE + P P Sbjct: 376 PRPARTPPGRPATAGNVAPPSAPRTARPPSPTLADFDLWDDEEDMPFGPPATP 428
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 33.1 bits (74), Expect = 0.29 Identities = 19/53 (35%), Positives = 25/53 (47%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPPRG 268 P P P PA ++ P P TA P +P A+ + + G G AP AP G Sbjct: 271 PPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQ---NGGSAGAAPAPAPAAG 320 Score = 30.4 bits (67), Expect = 1.9 Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 7/58 (12%) Frame = -2 Query: 420 PEPEPAGRS-------QRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPPRG 268 PEP PAGR+ QR PP SPR RPL+P G + A R PP G Sbjct: 87 PEPPPAGRARPGGGGPQRPGPP-SPR--RPLVPAGPA---------PPAAKLRPPPEG 132
>ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Tyrosine| kinase non-receptor protein 2) Length = 1036 Score = 32.0 bits (71), Expect = 0.64 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAP---PLSPRTARP--LLPCGASGRELDDEGERGVAPKRAPPR 271 P P P P G + + P P+ PR RP L G E + +P R PPR Sbjct: 724 PAPSPSPGGDDKPQVPPRVPIPPRPTRPHVQLSPAPPGEEETSQWPGPASPPRVPPR 780
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 31.6 bits (70), Expect = 0.83 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Frame = -2 Query: 429 LPEPEPEPAGRSQRRA-PPLSPRTAR------PLLPCGASGRELDDEGERGVAPKRAPP 274 LP P P PA Q + PP+ P T PL P + RE G G +P P Sbjct: 441 LPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQRAEREAARAGPEGTSPPTPTP 499
>SYN3_RAT (O70441) Synapsin-3 (Synapsin III)| Length = 579 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPPR 271 P+P P P G ++ P PR+ P S + L +G++ V+P+ P+ Sbjct: 431 PQPRPPPQGGPRQAQSPQPPRSRSP------SQQRLSPQGQQPVSPQSGSPQ 476
>SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)| Length = 579 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPPR 271 P+P P P G ++ P PR+ P S + L +G++ V+P+ P+ Sbjct: 431 PQPRPPPQGGPRQAQSPQPPRSRSP------SQQRLSPQGQQPVSPQSGSPQ 476
>MOT8_HUMAN (P36021) Monocarboxylate transporter 8 (MCT 8) (X-linked| PEST-containing transporter) (MCT 7) Length = 613 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/50 (40%), Positives = 23/50 (46%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAP 277 PEPEPEP PP P+ LP A EL+ E ER P+ P Sbjct: 111 PEPEPEPV-----PVPPPEPQPEPQPLPDPAPLPELEFESERVHEPEPTP 155
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEG 307 PEP EPA +RR P + LLP G S D G Sbjct: 882 PEPSQEPAALPKRRLPHNATTGYEELLPEGGSAEATDGSG 921
>E1A_ADE05 (P03255) Early E1A 32 kDa protein| Length = 289 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPR-TARPLLPCGASGRELDDEGERGVAPKRAPP 274 PEPEPEP R P ++P RP P D + G P PP Sbjct: 192 PEPEPEPEPARPTRRPKMAPAILRRPTSPVSRECNSSTDSCDSG--PSNTPP 241
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = -2 Query: 420 PEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPP 274 P P G ++ PP P ++ P P GA+GR D + G + PP Sbjct: 1218 PGISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPP 1266
>ACK1_MOUSE (O54967) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1)| (Non-receptor protein tyrosine kinase Ack) (Tyrosine kinase non-receptor protein 2) Length = 1055 Score = 30.4 bits (67), Expect = 1.9 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Frame = -2 Query: 420 PEPEPAGRSQRRAP---PLSPRTARPL--LPCGASGRELDDEGERGVAPKRAPPR 271 P P P G + + P P+ PR RP L SG E +P R PPR Sbjct: 742 PSPTPGGDDKPQVPPRVPIPPRPTRPRVELSPAPSGEEETSRWPGPASPPRVPPR 796
>Y2850_MYCTU (O05809) Hypothetical protein Rv2850c/MT2916| Length = 629 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPK-RAPPR 271 PEPEP+P G Q P S +R + + D+ R +P+ R+ PR Sbjct: 310 PEPEPDPPGGGQSANEPASQPNSRSKSTEPGAPSSMGDDPPRPASPRLRSSPR 362
>CI066_HUMAN (Q5T8R8) Protein C9orf66| Length = 295 Score = 30.0 bits (66), Expect = 2.4 Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 23/98 (23%) Frame = -2 Query: 426 PEPEP-EPAGRSQRRAPPLSPRTARPLLPC---------GASGREL---------DDEGE 304 P P+P EP RRAPP + + L PC G SGR L D E E Sbjct: 70 PPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERE 129 Query: 303 RGVAPKR----APPRGEWLRYLILAFSTPVRCRRPAAD 202 R R PP WL A S + RR AA+ Sbjct: 130 RAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAE 167
>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2| Length = 306 Score = 30.0 bits (66), Expect = 2.4 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Frame = +3 Query: 24 TGGLAAAWPSTPVVSLAPSCSWPSVSGRQKSTRTRTRRGEAPSK---SILETDA**TGSR 194 T A W + + APS + + + +ST + R APS ++ T A R Sbjct: 170 TASCAGRWRTCCAAAAAPSAARSASARTGRSTSSCARAARAPSATEGALTRTPA----PR 225 Query: 195 LPNRRRADGTGP 230 P +RR GTGP Sbjct: 226 RPLQRRRPGTGP 237
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -2 Query: 417 EPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPP 274 +P P G S PP P P GA GR+ ++G +G A PP Sbjct: 1343 QPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ-GEKGAKGEAGAEGPP 1389
>E1A_ADE02 (P03254) Early E1A 32 kDa protein| Length = 289 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPR-TARPLLPCGASGRELDDEGERGVAPKRAPP 274 PEPEPEP R P L P RP P D + G P PP Sbjct: 192 PEPEPEPEPARPTRRPKLVPAILRRPTSPVSRECNSSTDSCDSG--PSNTPP 241
>FMNL_MOUSE (Q9JL26) Formin-like 1 protein (Formin-related protein)| Length = 1094 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPC 340 P P P P +SQ+ APP +P A PL C Sbjct: 543 PPPPPLPNLQSQQEAPPSAPPLAPPLPGC 571
>INO80_ASHGO (Q74Z27) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1414 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 408 PAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGE 304 PA R+ +AP + A P L SG +L+DEGE Sbjct: 156 PAARAAAKAPVRAEGAAEPPLKRELSGAKLEDEGE 190
>NEUM_SERCA (Q98987) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Fragment) Length = 241 Score = 29.6 bits (65), Expect = 3.2 Identities = 21/86 (24%), Positives = 28/86 (32%), Gaps = 4/86 (4%) Frame = +3 Query: 183 TGSRLPNRRRADG----TGPA*KTQESNSGATHRAGEXXXXXXXXXXXXXXXXXXXXXXX 350 T +L ++ D T A K +E +G E Sbjct: 41 TRKKLKGEKKGDAPASETDAADKKEEGPAGGAAENKESEAPAATEAAAADSAQQEEGSKD 100 Query: 351 XXXPSEEKEGALAVDFGQPAPAPALA 428 P+EEK+G A D G PAP A Sbjct: 101 SSAPAEEKKGDGAADTGSEQPAPQAA 126
>NIFA_AZOBR (P30667) Nif-specific regulatory protein| Length = 625 Score = 29.6 bits (65), Expect = 3.2 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Frame = -2 Query: 429 LPEPEPEPAGRSQRRAPPLSPRTARPLL-----PCGASGRELDDEG----ERGVAPKRAP 277 +P P PEPAG + R P RPL P G SG D R P +AP Sbjct: 501 MPAPVPEPAGAAAARGRPARRVVPRPLAGLRRRPAGGSGP--PDPACPCPSRAPLPPQAP 558 Query: 276 P 274 P Sbjct: 559 P 559
>VE4_HPV57 (P22157) Probable protein E4| Length = 124 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPPRGEW 262 P+P+P+ R R PP R P ASG D G R+ +G W Sbjct: 48 PQPQPQQQSRPHSRTPPRRHRVRHP----SASGSSSDSSGNSPTLRGRS-EKGRW 97
>XYLT1_HUMAN (Q86Y38) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (XylT-I) (XT-I) (Peptide O-xylosyltransferase 1) Length = 959 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%) Frame = +1 Query: 202 IGGG---PTAPDRRRKRKNQIAEPLTARG 279 +GGG P AP RR+R++ AEP ARG Sbjct: 51 VGGGEQPPPAPAPRRERRDLPAEPAAARG 79
>SQT1_CAEEL (P12114) Cuticle collagen sqt-1 (Protein squat-1) (Protein| roller-5) Length = 324 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = -2 Query: 408 PAGRSQRRAPPLSPRTARPLLPCGASGRELDD--EGERG 298 PAG++ PP P T P P G GR+ D +GE G Sbjct: 253 PAGQNGLHGPPGEPGTVGPEGPSGKQGRQGPDGTQGETG 291
>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)| (Fragment) Length = 290 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 6/47 (12%) Frame = -2 Query: 420 PEPEPAGRSQRRAPPLSPRTAR------PLLPCGASGRELDDEGERG 298 P P PA Q +PPL P T PL P + RE G G Sbjct: 80 PPPYPAPEKQEESPPLVPATCSRKRGRPPLTPSQRAEREAARSGPEG 126
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDD----EGERGVAPKRAPPR 271 P +P P +++R PP SP A P + D E R P + PPR Sbjct: 793 PREKPAPPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPETPRKKTPIQKPPR 848
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 28.9 bits (63), Expect = 5.4 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%) Frame = +2 Query: 8 TSSILHGRASRRLA*HPRC-QPRPQLQLAIRLRP-PEKHTHTHTTRGSTIEIN---SRNR 172 TS GRA R P +P P + P P H + T E+ S + Sbjct: 1337 TSRATRGRAHRSSVKTPAASEPLPSASTDQPITPKPTSRGRAHRSSAKTPELQPPTSTGQ 1396 Query: 173 RIVDRFPTSQSAAGRRHRTGVE 238 + R PTSQ+ GR HR+ ++ Sbjct: 1397 PVTPR-PTSQATRGRTHRSSIK 1417
>FTSK_CAUCR (Q9A262) DNA translocase ftsK| Length = 819 Score = 28.9 bits (63), Expect = 5.4 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Frame = -2 Query: 426 PEPEPEPAGRS------QRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRA--PP 274 PEPEPEPA + + +A P +PR R L P A E + A +RA PP Sbjct: 214 PEPEPEPAPAAKPVRARREKAEPAAPRAGR-LPPLEADEDETPIAASQPAAAQRAYTPP 271
>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| Length = 533 Score = 25.8 bits (55), Expect(2) = 6.9 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 406 GWPKSTASAPSFSSDGAPPP 347 G P +SAP+ GAPPP Sbjct: 102 GLPLPPSSAPTLGGSGAPPP 121 Score = 21.2 bits (43), Expect(2) = 6.9 Identities = 8/10 (80%), Positives = 8/10 (80%) Frame = -2 Query: 426 PEPEPEPAGR 397 PEPEP AGR Sbjct: 61 PEPEPGEAGR 70
>TGM1_HUMAN (P22735) Protein-glutamine gamma-glutamyltransferase K (EC| 2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K)) (Transglutaminase-1) (Epidermal TGase) Length = 817 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -2 Query: 426 PEPEPEPAGRSQR 388 PEPEPEP GRS+R Sbjct: 25 PEPEPEPDGRSRR 37
>GLMU_NITEU (Q82XP7) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 458 Score = 28.5 bits (62), Expect = 7.1 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%) Frame = -2 Query: 417 EPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPPRGEWLRYLILAF 238 E + A +SQ++ ++ T +LP G G LD+ + A +GE+ I+A Sbjct: 155 EEKDASQSQKKIREIN--TGIMVLPNGRLGNWLDNLSD-------ANTQGEYYLTDIIAM 205 Query: 237 ST----PVRCRRPAADWEV 193 + P+ PA+DWEV Sbjct: 206 AVDAGIPIETSSPASDWEV 224
>KKCC2_RAT (O88831) Calcium/calmodulin-dependent protein kinase kinase 2 (EC| 2.7.11.17) (Calcium/calmodulin-dependent protein kinase kinase beta) (CaM-kinase kinase beta) (CaM-KK beta) (CaMKK beta) Length = 587 Score = 28.5 bits (62), Expect = 7.1 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Frame = -2 Query: 423 EPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEG----ERGVAPKRAPPR 271 EP EP QRR PP PR + PCG G L G G +PPR Sbjct: 525 EPLSEPKEARQRRQPP-GPRAS----PCGGGGSALVKGGPCVESCGAPAPGSPPR 574
>SYE2_ANAMM (Q5PAG8) Glutamyl-tRNA synthetase 2 (EC 6.1.1.17) (Glutamate--tRNA| ligase 2) (GluRS 2) Length = 466 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 232 RRKRKNQIAEPLTARGSSLWCH 297 RR+R Q+AE L ARG + +C+ Sbjct: 78 RRERHTQVAEELLARGKAYYCY 99
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -2 Query: 417 EPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPP 274 +P P G S PP P P G+ GR+ ++G +G A PP Sbjct: 1341 QPGPPGPSGEAGPPGPPGKRGPPGASGSEGRQ-GEKGAKGEAGAEGPP 1387
>HUNK_MOUSE (O88866) Hormonally up-regulated neu tumor-associated kinase (EC| 2.7.11.1) (Serine/threonine-protein kinase MAK-V) Length = 714 Score = 28.5 bits (62), Expect = 7.1 Identities = 24/63 (38%), Positives = 28/63 (44%) Frame = -3 Query: 371 LLGRRAPSFPAGQAAASWTTRASAEWHQSELPRAVSGSAI*FLRFLRRSGAVGPPPIGKS 192 LLG P+ P G A TTR +A S LP VSG + LR + VG IG Sbjct: 9 LLGE--PAAPGGDGGAEDTTRPAAACEGSFLPAWVSGVSRERLRDFQHHKRVGNYLIGSR 66 Query: 191 GTG 183 G Sbjct: 67 KLG 69
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 28.5 bits (62), Expect = 7.1 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPPRG 268 P+P+P P +++ AP T RP +P G + G R V PK P G Sbjct: 71 PKPQPSPQQQTKASAPSAGGETPRPAVPKPGPGLK---PGPRPV-PKPGPRPG 119
>MYCN_MOUSE (P03966) N-myc proto-oncogene protein| Length = 462 Score = 28.5 bits (62), Expect = 7.1 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 3/90 (3%) Frame = +3 Query: 6 QPQAFFTGGLAAAWPSTPVVSLAPSCSWPSVSGRQKSTRT---RTRRGEAPSKSILETDA 176 + AF GGL P+ ++ C W S R+K R + + G P A Sbjct: 94 EEDAFGLGGLGGLTPNPVILQ---DCMWSGFSAREKLERAVNEKLQHGHGPPGVSSACSA 150 Query: 177 **TGSRLPNRRRADGTGPA*KTQESNSGAT 266 G+ P R G+ A S++GAT Sbjct: 151 PGVGASSPGGRALGGSSSA-----SHTGAT 175
>NEUM_CHICK (P35001) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) Length = 246 Score = 28.5 bits (62), Expect = 7.1 Identities = 21/86 (24%), Positives = 27/86 (31%), Gaps = 4/86 (4%) Frame = +3 Query: 183 TGSRLPNRRRADGTGP----A*KTQESNSGATHRAGEXXXXXXXXXXXXXXXXXXXXXXX 350 T +L ++AD A K E +G E Sbjct: 48 TRKKLKGEKKADAPASESEAADKKDEGPAGGRAENKESEASTATEASAADSAQLDEGSKD 107 Query: 351 XXXPSEEKEGALAVDFGQPAPAPALA 428 P+EEK+G A D G PAP A Sbjct: 108 SSVPTEEKKGNGAADTGSEQPAPQAA 133
>KKCC2_MOUSE (Q8C078) Calcium/calmodulin-dependent protein kinase kinase 2 (EC| 2.7.11.17) (Calcium/calmodulin-dependent protein kinase kinase beta) (CaM-kinase kinase beta) (CaM-KK beta) (CaMKK beta) Length = 588 Score = 28.1 bits (61), Expect = 9.2 Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 4/55 (7%) Frame = -2 Query: 423 EPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEG----ERGVAPKRAPPR 271 EP EP QRR PP PR PCG G L G G +PPR Sbjct: 526 EPLSEPKEARQRRQPP-GPRAG----PCGGGGSALVKGGPCVESWGAPAPGSPPR 575
>CABL1_HUMAN (Q8TDN4) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)| (Ik3-1) Length = 633 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTAR 355 P+P+P+PA + + PP PR R Sbjct: 33 PQPQPQPAAAAPAQPPPEPPRKPR 56
>GATA6_RAT (P46153) Transcription factor GATA-6 (GATA-binding factor 6)| (DNA-binding protein GATA-GT2) Length = 441 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -1 Query: 421 AGAGAGWPKSTASAPSFSSDGA 356 AGA GWP+++A +P + GA Sbjct: 72 AGAHPGWPQASADSPPYGGGGA 93
>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 449 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -1 Query: 421 AGAGAGWPKSTASAPSFSSDG 359 AGA GWP+++A +P + S G Sbjct: 73 AGAHPGWPQASADSPPYGSGG 93
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -3 Query: 401 AEVNGERPLFLLGRRAPSFPAGQAAASWTTR 309 A VNG PL+ L R+ S PA AA + TR Sbjct: 1485 AGVNGPPPLYHLERKKSSLPAATAAVTKGTR 1515
>G3PT_MACFA (Q4R3T1) Glyceraldehyde-3-phosphate dehydrogenase, testis-specific| (EC 1.2.1.12) (Spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2) (GAPDH-2) Length = 409 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLS--PRTARPLLPCGASGREL 319 P+PEP P + PP S PR A P G + REL Sbjct: 40 PQPEPTPVREEIKPPPPPSPPPRPATPPPKMGPAPREL 77
>HMSH_DROME (Q03372) Muscle segmentation homeobox (Protein drop) (Protein msh)| Length = 515 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +2 Query: 53 HPRCQPRPQLQLAIRL---RPPEKHTHTHTTRGSTIEINSRNRRIVDRFPTSQSAAGRRH 223 H + Q + Q A++L PP H H T+R S + S R P +Q+A G ++ Sbjct: 99 HQQQQQQQQQAAALQLAAVHPPAHHLHKTTSRLSNFSVASLLADTRPRTPPNQAADGPQN 158 Query: 224 RT 229 T Sbjct: 159 LT 160
>ADA1D_HUMAN (P25100) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)| (Alpha 1D-adrenoreceptor) (Alpha-1A adrenergic receptor) (Alpha adrenergic receptor 1a) Length = 572 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 429 LPEPEPEPAGRSQRRAPPLSPR 364 LP+P+PEP G + +AP S R Sbjct: 467 LPDPDPEPPGTPEMQAPVASRR 488
>SYNJ2_HUMAN (O15056) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1496 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLP 343 PEP P A +APPL PR P +P Sbjct: 1209 PEPTPGAAKPETPQAPPLLPRRPPPRVP 1236
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSP-RTARPLLPCGASGRELDDEGERGVAPKRAPP 274 P P P P +R PPL+P R ++ L AS L +G + + +RA P Sbjct: 1041 PPPPPPPPAPQRRATPPLAPGRLSQDLKLISASQPALPQDGAQTL--RRASP 1090
>TONB_ECOLI (P02929) Protein tonB| Length = 239 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = -2 Query: 426 PEPEPEPAGRSQRRAPPLSPRTARPLLPCGASGRELDDEGERGVAPKRAPP 274 PEPEPEP + AP + + P +++ ++ +R V P + P Sbjct: 71 PEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,736,274 Number of Sequences: 219361 Number of extensions: 1117098 Number of successful extensions: 5752 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 4905 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5631 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
