ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLA2_SCHPO (Q9P6L5) Endocytosis protein end4 (SLA2 protein homolog) 29 2.4
2YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein P... 29 3.1
3KIF5C_MOUSE (P28738) Kinesin heavy chain isoform 5C (Kinesin hea... 27 9.0
4KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin hea... 27 9.0
5FAS1_CANAL (P34731) Fatty acid synthase beta subunit (EC 2.3.1.8... 27 9.0

>SLA2_SCHPO (Q9P6L5) Endocytosis protein end4 (SLA2 protein homolog)|
          Length = 1092

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 365 WDEHVARAFTPFWAAVRVSESCASDAAT 282
           WD H AR   PFW A++V    A++  T
Sbjct: 35  WDHHTAR---PFWTAIKVQPLLANEVQT 59



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>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 26/105 (24%), Positives = 35/105 (33%)
 Frame = -3

Query: 395 SSSTVSRSLAWDEHVARAFTPFWAAVRVSESCASDAATESRPRTSISESSRSRLGRPDAT 216
           SSS  S SLA     + +          S +  S A + S   T+ S S+ S      + 
Sbjct: 141 SSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSL 200

Query: 215 EHVDAAEATXXXXXXXXXXXXXRPSQKRSSEAGLTTREDAAAESI 81
               +A AT               S   SS    TT   A + SI
Sbjct: 201 NSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSI 245



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>KIF5C_MOUSE (P28738) Kinesin heavy chain isoform 5C (Kinesin heavy chain|
           neuron-specific 2)
          Length = 956

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 268 RGLDSVAASLAQLSDTLTAAQKGVNALATCSSHARERET 384
           R  + +   LAQ + TLT  Q+ ++ L   S+H ++R T
Sbjct: 509 RANEQLTDELAQKTTTLTTTQRELSQLQELSNHQKKRAT 547



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>KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin heavy chain|
           neuron-specific 2)
          Length = 957

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 268 RGLDSVAASLAQLSDTLTAAQKGVNALATCSSHARERET 384
           R  + +   LAQ + TLT  Q+ ++ L   S+H ++R T
Sbjct: 510 RANEQLTDELAQKTTTLTTTQRELSQLQELSNHQKKRAT 548



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>FAS1_CANAL (P34731) Fatty acid synthase beta subunit (EC 2.3.1.86) [Includes:|
           3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
           (EC 4.2.1.61); Enoyl-[acyl-carrier-protein] reductase
           [NADH] (EC 1.3.1.9); [Acyl-carrier-protein]
           acetyltransferase (EC 2.
          Length = 2037

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -3

Query: 386 TVSRSLAWDEHVARAFTPFWAAVRVSESCASDAATESRPRTSISESSRSRLGRP 225
           T++ S +WD  +  + T     + +   C S     S P T + +S  +  GRP
Sbjct: 269 TIAASDSWDSFLKNSLTAVSLLLFIGSRCLSTYPRTSLPPTMLQDSLDNGEGRP 322


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,019,846
Number of Sequences: 219361
Number of extensions: 224360
Number of successful extensions: 742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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