ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_474981.1| Oryza sativa (japonica cultivar-group), predic... 281 8e-73
2dbj|AK059410.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 2e-70
3emb|AL606996.3|OSJN00123 Oryza sativa genomic DNA, chromosome 4,... 151 2e-33
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
5emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromosome 4,... 151 2e-33
6gb|AY622319.1| Mentha spicata limonene-3-hydroxylase (lim3h) mRN... 46 0.086
7gb|AY281027.1| Mentha x gracilis limonene-3-hydroxylase mRNA, co... 46 0.086
8gb|AF124817.1|AF124817 Mentha x piperita cytochrome p450 isoform... 46 0.086
9gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 44 0.34
10dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.34
11gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.3
12emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.3
13gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, com... 42 1.3
14gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.3
15gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, co... 42 1.3
16dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.3
17dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.3
18gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.3
19gb|BT018854.1| Zea mays clone EL01N0556B07.d mRNA sequence 40 5.3
20gb|BT017305.1| Zea mays clone EL01N0316E09.c mRNA sequence 40 5.3
21gb|AY596557.1| Saccharum officinarum clone SCCCCL3120B05, comple... 40 5.3
22emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 5.3
23emb|AJ276219.1|SAU276219 Stigmatella aurantiaca ephA gene for pu... 40 5.3
24emb|AJ276218.1|SAU276218 Stigmatella aurantiaca hspA gene for he... 40 5.3
25gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.3
26gb|AY442225.1| Streptomyces diastaticus polyketide rim gene clus... 40 5.3
27dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
28gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055... 40 5.3
29gb|AF546152.1| Streptomyces sp. 100/Eco52 UnbL (unbL), UnbV (unb... 40 5.3
30dbj|AK099202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
31dbj|AK072265.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
32emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.3
33dbj|AK061181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
34gb|AY103781.1| Zea mays PCO113646 mRNA sequence 40 5.3
35gb|AF065244.1|AF065244 Agrobacterium tumefaciens strain K84 plas... 40 5.3
36gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
37dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 5.3
38gb|M30949.1|ORARGIT Orangutan rRNA gene internal transcribed spa... 40 5.3

>ref|XM_474981.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 957

 Score =  281 bits (142), Expect = 8e-73
 Identities = 232/262 (88%)
 Strand = Plus / Plus

                                                                       
Query: 113 tcagccccgcctccgacgaccgcttctgggacggcctgcgcaaccgcgtcgacaccatcc 172
           |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 23  tcagccccgcctccgacgaccgcttctgggaccgcctccgcacccgcgtcgacaccatcc 82

                                                                       
Query: 173 tcgaggaccgccgcctcgtcgcctccgccgcgtccacgtgctcggtggcgtccgggcgcc 232
           ||||||||||||||||||||||  || ||||  ||||||||  |||||  |||| |||  
Sbjct: 83  tcgaggaccgccgcctcgtcgctccccccgccgccacgtgcggggtggaatccgagcggg 142

                                                                       
Query: 233 ccaagcggctccgggaggactcgctgatgctggtccgcggcctcgactccgtcgccgcgt 292
             ||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct: 143 ggaagcggctcagggaggactcgctgatgctggtgcgtggcctcgactccgtcgccgcct 202

                                                                       
Query: 293 cgctcgcgcagctctccgacaccctcaccgccgcccagaagggcgtgaacgctctggcga 352
           |||| ||||||||||||||||||||||||||||| |||||||| ||||| || || || |
Sbjct: 203 cgctggcgcagctctccgacaccctcaccgccgcgcagaagggagtgaatgcgctcgcca 262

                                 
Query: 353 cgtgctcgtcccacgcgaggga 374
           ||||||| ||||| ||||||||
Sbjct: 263 cgtgctcttcccaggcgaggga 284



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>dbj|AK059410.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C06, full
           insert sequence
          Length = 1133

 Score =  274 bits (138), Expect = 2e-70
 Identities = 231/262 (88%)
 Strand = Plus / Plus

                                                                       
Query: 113 tcagccccgcctccgacgaccgcttctgggacggcctgcgcaaccgcgtcgacaccatcc 172
           |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 68  tcagccccgcctccgacgaccgcttctgggaccgcctccgcacccgcgtcgacaccatcc 127

                                                                       
Query: 173 tcgaggaccgccgcctcgtcgcctccgccgcgtccacgtgctcggtggcgtccgggcgcc 232
           ||||||||||||||||||||||  || ||||  ||||||||  |||||  |||| |||  
Sbjct: 128 tcgaggaccgccgcctcgtcgctccccccgccgccacgtgcggggtggaatccgagcggg 187

                                                                       
Query: 233 ccaagcggctccgggaggactcgctgatgctggtccgcggcctcgactccgtcgccgcgt 292
             ||||||||| |||||||||||||||||||||| || ||||||||||||||||||||  
Sbjct: 188 ggaagcggctcagggaggactcgctgatgctggtgcgtggcctcgactccgtcgccgccc 247

                                                                       
Query: 293 cgctcgcgcagctctccgacaccctcaccgccgcccagaagggcgtgaacgctctggcga 352
           |||| ||||||||||||||||||||||||||||| |||||||| ||||| || || || |
Sbjct: 248 cgctggcgcagctctccgacaccctcaccgccgcgcagaagggagtgaatgcgctcgcca 307

                                 
Query: 353 cgtgctcgtcccacgcgaggga 374
           ||||||| ||||| ||||||||
Sbjct: 308 cgtgctcttcccaggcgaggga 329



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>emb|AL606996.3|OSJN00123 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0071D01,
             complete sequence
          Length = 78794

 Score =  151 bits (76), Expect = 2e-33
 Identities = 94/100 (94%)
 Strand = Plus / Minus

                                                                         
Query: 235   aagcggctccgggaggactcgctgatgctggtccgcggcctcgactccgtcgccgcgtcg 294
             ||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct: 78489 aagcggctcagggaggactcgctgatgctggtgcgtggcctcgactccgtcgccgcctcg 78430

                                                     
Query: 295   ctcgcgcagctctccgacaccctcaccgccgcccagaagg 334
             || ||||||||||||||||||||||||||||| |||||||
Sbjct: 78429 ctggcgcagctctccgacaccctcaccgccgcgcagaagg 78390



 Score =  139 bits (70), Expect = 8e-30
 Identities = 79/82 (96%)
 Strand = Plus / Minus

                                                                         
Query: 113   tcagccccgcctccgacgaccgcttctgggacggcctgcgcaaccgcgtcgacaccatcc 172
             |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 78698 tcagccccgcctccgacgaccgcttctgggaccgcctccgcacccgcgtcgacaccatcc 78639

                                   
Query: 173   tcgaggaccgccgcctcgtcgc 194
             ||||||||||||||||||||||
Sbjct: 78638 tcgaggaccgccgcctcgtcgc 78617



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  151 bits (76), Expect = 2e-33
 Identities = 94/100 (94%)
 Strand = Plus / Minus

                                                                           
Query: 235     aagcggctccgggaggactcgctgatgctggtccgcggcctcgactccgtcgccgcgtcg 294
               ||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct: 8545920 aagcggctcagggaggactcgctgatgctggtgcgtggcctcgactccgtcgccgcctcg 8545861

                                                       
Query: 295     ctcgcgcagctctccgacaccctcaccgccgcccagaagg 334
               || ||||||||||||||||||||||||||||| |||||||
Sbjct: 8545860 ctggcgcagctctccgacaccctcaccgccgcgcagaagg 8545821



 Score =  139 bits (70), Expect = 8e-30
 Identities = 79/82 (96%)
 Strand = Plus / Minus

                                                                           
Query: 113     tcagccccgcctccgacgaccgcttctgggacggcctgcgcaaccgcgtcgacaccatcc 172
               |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 8546129 tcagccccgcctccgacgaccgcttctgggaccgcctccgcacccgcgtcgacaccatcc 8546070

                                     
Query: 173     tcgaggaccgccgcctcgtcgc 194
               ||||||||||||||||||||||
Sbjct: 8546069 tcgaggaccgccgcctcgtcgc 8546048



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>emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065B15,
            complete sequence
          Length = 150007

 Score =  151 bits (76), Expect = 2e-33
 Identities = 94/100 (94%)
 Strand = Plus / Minus

                                                                        
Query: 235  aagcggctccgggaggactcgctgatgctggtccgcggcctcgactccgtcgccgcgtcg 294
            ||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct: 6363 aagcggctcagggaggactcgctgatgctggtgcgtggcctcgactccgtcgccgcctcg 6304

                                                    
Query: 295  ctcgcgcagctctccgacaccctcaccgccgcccagaagg 334
            || ||||||||||||||||||||||||||||| |||||||
Sbjct: 6303 ctggcgcagctctccgacaccctcaccgccgcgcagaagg 6264



 Score =  139 bits (70), Expect = 8e-30
 Identities = 79/82 (96%)
 Strand = Plus / Minus

                                                                        
Query: 113  tcagccccgcctccgacgaccgcttctgggacggcctgcgcaaccgcgtcgacaccatcc 172
            |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 6572 tcagccccgcctccgacgaccgcttctgggaccgcctccgcacccgcgtcgacaccatcc 6513

                                  
Query: 173  tcgaggaccgccgcctcgtcgc 194
            ||||||||||||||||||||||
Sbjct: 6512 tcgaggaccgccgcctcgtcgc 6491



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>gb|AY622319.1| Mentha spicata limonene-3-hydroxylase (lim3h) mRNA, complete cds
          Length = 1491

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 156 ccgcgtcgacaccatcctcgagg 178
           |||||||||||||||||||||||
Sbjct: 720 ccgcgtcgacaccatcctcgagg 742



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>gb|AY281027.1| Mentha x gracilis limonene-3-hydroxylase mRNA, complete cds
          Length = 1732

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 156 ccgcgtcgacaccatcctcgagg 178
           |||||||||||||||||||||||
Sbjct: 724 ccgcgtcgacaccatcctcgagg 746



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>gb|AF124817.1|AF124817 Mentha x piperita cytochrome p450 isoform PM2 mRNA, complete cds
          Length = 1497

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 156 ccgcgtcgacaccatcctcgagg 178
           |||||||||||||||||||||||
Sbjct: 723 ccgcgtcgacaccatcctcgagg 745



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 285   cgccgcgtcgctcgcgcagctc 306
             ||||||||||||||||||||||
Sbjct: 26264 cgccgcgtcgctcgcgcagctc 26285



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 124     tccgacgaccgcttctgggacg 145
               ||||||||||||||||||||||
Sbjct: 5955348 tccgacgaccgcttctgggacg 5955369



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 281    ccgtcgccgcgtcgctcgcgc 301
              |||||||||||||||||||||
Sbjct: 461174 ccgtcgccgcgtcgctcgcgc 461154



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 281     ccgtcgccgcgtcgctcgcgc 301
               |||||||||||||||||||||
Sbjct: 1780440 ccgtcgccgcgtcgctcgcgc 1780420



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>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence
          Length = 256999

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 234    caagcggctccgggaggactc 254
              |||||||||||||||||||||
Sbjct: 231957 caagcggctccgggaggactc 231977



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 281     ccgtcgccgcgtcgctcgcgc 301
               |||||||||||||||||||||
Sbjct: 1003514 ccgtcgccgcgtcgctcgcgc 1003534



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>gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, complete sequence
          Length = 159741

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   caagcggctccgggaggactc 254
             |||||||||||||||||||||
Sbjct: 87486 caagcggctccgggaggactc 87466



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 189     cgtcgcctccgccgcgtccac 209
               |||||||||||||||||||||
Sbjct: 4731443 cgtcgcctccgccgcgtccac 4731423



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 125     ccgacgaccgcttctgggacg 145
               |||||||||||||||||||||
Sbjct: 8593069 ccgacgaccgcttctgggacg 8593049



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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 281     ccgtcgccgcgtcgctcgcgc 301
               |||||||||||||||||||||
Sbjct: 1302287 ccgtcgccgcgtcgctcgcgc 1302307



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 285     cgccgcgtcgctcgcgcagc 304
               ||||||||||||||||||||
Sbjct: 2178715 cgccgcgtcgctcgcgcagc 2178734



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>gb|BT018854.1| Zea mays clone EL01N0556B07.d mRNA sequence
          Length = 1562

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 79  ccgatggactccgccgcggcgtcc 102
           |||||||||||||| |||||||||
Sbjct: 581 ccgatggactccgcggcggcgtcc 604



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>gb|BT017305.1| Zea mays clone EL01N0316E09.c mRNA sequence
          Length = 1435

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 180 ccgccgcctcgtcgcctccgccgc 203
           |||||||| |||||||||||||||
Sbjct: 160 ccgccgccgcgtcgcctccgccgc 183



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>gb|AY596557.1| Saccharum officinarum clone SCCCCL3120B05, complete sequence
          Length = 1460

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 180 ccgccgcctcgtcgcctccgccgc 203
           |||||||| |||||||||||||||
Sbjct: 209 ccgccgccgcgtcgcctccgccgc 232



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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    tcgaggaccgccgcctcgtc 192
              ||||||||||||||||||||
Sbjct: 878465 tcgaggaccgccgcctcgtc 878446



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>emb|AJ276219.1|SAU276219 Stigmatella aurantiaca ephA gene for putative epoxide hydrolase
          Length = 1587

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 gagcgcgagacggtggagga 392
           ||||||||||||||||||||
Sbjct: 520 gagcgcgagacggtggagga 539



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>emb|AJ276218.1|SAU276218 Stigmatella aurantiaca hspA gene for heat shock protein
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  gagcgcgagacggtggagga 392
            ||||||||||||||||||||
Sbjct: 2940 gagcgcgagacggtggagga 2921



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 272     gcctcgactccgtcgccgcg 291
               ||||||||||||||||||||
Sbjct: 4942068 gcctcgactccgtcgccgcg 4942049



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>gb|AY442225.1| Streptomyces diastaticus polyketide rim gene cluster, partial
            sequence
          Length = 19055

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   cccgtcgccgcgccgcacac 60
            ||||||||||||||||||||
Sbjct: 3025 cccgtcgccgcgccgcacac 3006



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 184      cgcctcgtcgcctccgccgc 203
                ||||||||||||||||||||
Sbjct: 17395770 cgcctcgtcgcctccgccgc 17395751



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>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete
             sequence
          Length = 134058

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   cgcctcgtcgcctccgccgc 203
             ||||||||||||||||||||
Sbjct: 24765 cgcctcgtcgcctccgccgc 24746



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>gb|AF546152.1| Streptomyces sp. 100/Eco52 UnbL (unbL), UnbV (unbV), UnbU (unbU),
            PskE (pksE), and TebC (tebC) genes, complete cds
          Length = 10352

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  cgacaccctcaccgccgccc 328
            ||||||||||||||||||||
Sbjct: 7903 cgacaccctcaccgccgccc 7922



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>dbj|AK099202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023116K03, full
           insert sequence
          Length = 1455

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 cgcctcgtcgcctccgccgc 203
           ||||||||||||||||||||
Sbjct: 57  cgcctcgtcgcctccgccgc 76



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>dbj|AK072265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006K06, full
           insert sequence
          Length = 1461

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 cgcctcgtcgcctccgccgc 203
           ||||||||||||||||||||
Sbjct: 66  cgcctcgtcgcctccgccgc 85



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    gcgcgagacggtggaggagg 394
              ||||||||||||||||||||
Sbjct: 986911 gcgcgagacggtggaggagg 986930



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>dbj|AK061181.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D05, full
           insert sequence
          Length = 1132

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 cgcctcgtcgcctccgccgc 203
           ||||||||||||||||||||
Sbjct: 29  cgcctcgtcgcctccgccgc 48



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>gb|AY103781.1| Zea mays PCO113646 mRNA sequence
          Length = 1654

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 180 ccgccgcctcgtcgcctccgccgc 203
           |||||||| |||||||||||||||
Sbjct: 352 ccgccgccgcgtcgcctccgccgc 375



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>gb|AF065244.1|AF065244 Agrobacterium tumefaciens strain K84 plasmid pAtK84b ornithine
            cyclodeaminase (ocd) gene, partial cds; conjugal transfer
            regulatory protein (traR) and SmoC-like regulatory
            protein (sml) genes, complete cds; mannopine
            synthesis-like protein (msl) gene, partial cds; and
            unknown genes
          Length = 4860

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 267  ccgcggcctcgactccgtcg 286
            ||||||||||||||||||||
Sbjct: 4496 ccgcggcctcgactccgtcg 4515



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 184      cgcctcgtcgcctccgccgc 203
                ||||||||||||||||||||
Sbjct: 17404810 cgcctcgtcgcctccgccgc 17404791



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    gggaggactcgctgatgctg 264
              ||||||||||||||||||||
Sbjct: 909763 gggaggactcgctgatgctg 909782



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>gb|M30949.1|ORARGIT Orangutan rRNA gene internal transcribed spacer 1 (ITS1)
          Length = 1070

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 89  ccgccgcggcgtcctccctcgtcg 112
           ||||||||||||||| ||||||||
Sbjct: 31  ccgccgcggcgtccttcctcgtcg 54


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,927,946
Number of Sequences: 3902068
Number of extensions: 1927946
Number of successful extensions: 51215
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49598
Number of HSP's gapped (non-prelim): 1617
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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