>MBD4_MOUSE (Q9Z2D7) Methyl-CpG-binding domain protein 4 (EC 3.2.2.-)|
           (Methyl-CpG-binding protein MBD4) (Mismatch-specific DNA
           N-glycosylase)
          Length = 554

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +3

Query: 252 PSGWTK----KLNTTRGGKFEVVFITPTGEQVKSKKALTTYL 365
           P GW +    +L+    GKF+V FI+P G + +SK++L  YL
Sbjct: 74  PCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYL 115

>MECP2_MACFA (Q95LG8) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 486

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 252 PSGWTKKLNTTRGG----KFEVVFITPTGEQVKSKKALTTYLK 368
           P GWT+KL   + G    K++V  I P G+  +SK  L  Y +
Sbjct: 101 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFE 143

>MECP2_HUMAN (P51608) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 486

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 252 PSGWTKKLNTTRGG----KFEVVFITPTGEQVKSKKALTTYLK 368
           P GWT+KL   + G    K++V  I P G+  +SK  L  Y +
Sbjct: 101 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFE 143

>MECP2_RAT (Q00566) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 492

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 252 PSGWTKKLNTTRGG----KFEVVFITPTGEQVKSKKALTTYLK 368
           P GWT+KL   + G    K++V  I P G+  +SK  L  Y +
Sbjct: 101 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFE 143

>MECP2_MOUSE (Q9Z2D6) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 484

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 252 PSGWTKKLNTTRGG----KFEVVFITPTGEQVKSKKALTTYLK 368
           P GWT+KL   + G    K++V  I P G+  +SK  L  Y +
Sbjct: 101 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFE 143

>MBD4_HUMAN (O95243) Methyl-CpG-binding domain protein 4 (EC 3.2.2.-)|
           (Methyl-CpG-binding protein MBD4) (Methyl-CpG-binding
           endonuclease 1) (Mismatch-specific DNA N-glycosylase)
          Length = 580

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +3

Query: 252 PSGWTK----KLNTTRGGKFEVVFITPTGEQVKSKKALTTYL 365
           P GW +    +L     G+F+V FI+P G + +SK +L  YL
Sbjct: 87  PCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYL 128

>MBD1_MOUSE (Q9Z2E2) Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding|
           protein MBD1)
          Length = 636

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +3

Query: 258 GWTKKLNTTRGG----KFEVVFITPTGEQVKSKKALTTYLKAHPGGPA 389
           GW ++ +  + G    + ++ + +PTGE+++SK  LT YL     GPA
Sbjct: 14  GWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYL-----GPA 56

>TOR_CAEEL (Q95Q95) Target of rapamycin homolog (EC 2.7.11.1) (CeTOR) (Lethal|
            protein 363)
          Length = 2697

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 22   RARGTQIQSPLSNPPHPSRIHTPPLXXXXXXXPKTRNSPE 141
            R   T + SP   P  P ++H PP+       P  + SP+
Sbjct: 1940 RPHPTTVISPPQQPQQPKKMHIPPVTRATSPPPPAQKSPQ 1979

>PP2B1_CRYNV (O42773) Serine/threonine-protein phosphatase 2B catalytic subunit|
           A1 (EC 3.1.3.16) (Calcineurin A1)
          Length = 639

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +2

Query: 2   ANPKSQAEREELKSRAP--SPTLPTPRGSTLLPCGGGESGNPKLETAPS 142
           A+P   A  EE+ S  P  SP   TPR         G  G+P   T+PS
Sbjct: 519 ASPIMPATPEEIPSEIPYDSPITGTPRTPISSAIASGSPGSPGTPTSPS 567

>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 2   ANPKSQAEREELKSRAPSPTLPTPRGSTLLPCGGGESGNP 121
           A P  QA       +AP+P  PTPR     P GG   G P
Sbjct: 84  AAPARQASPASAHQQAPTPGAPTPR-----PQGGARPGMP 118

>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)|
          Length = 542

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 38  KSRAPSPTLPTPRGSTLLPCGGGESGNPKLETAP 139
           K R  +P  P P GS     G G  G P+ E +P
Sbjct: 43  KKRTEAPESPCPTGSKPRKPGAGRRGRPREEPSP 76

>YHT1_YEAST (P38835) PH domain protein YHR131C|
          Length = 850

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 111 LSPPPQGRSVDPRGVGRVGEGALDLS-SSRSAC 16
           + P PQ  S+   G+   GE A DLS SSRS C
Sbjct: 586 IRPKPQSSSIYLSGLAPNGESATDLSQSSRSLC 618


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,446,428
Number of Sequences: 219361
Number of extensions: 820375
Number of successful extensions: 3588
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3580
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)