ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast42g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY029558.1| Zea mays putative methyl-binding domain protein M... 58 2e-05
2gb|AY029559.1| Zea mays putative methyl-binding domain protein M... 52 0.001
3gb|AY103948.1| Zea mays PCO124731 mRNA sequence 52 0.001
4gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 46 0.091
5gb|DQ231520.1| Streptomyces sp. FR-008 ArsR2 (arsR2), ArsO (arsO... 44 0.36
6gb|AY596528.1| Saccharum officinarum clone SCAGLR1043D06, comple... 44 0.36
7emb|AL645686.10| Mouse DNA sequence from clone RP23-330D1 on chr... 44 0.36
8gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 44 0.36
9gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-24... 44 0.36
10emb|CT485616.11| Mouse DNA sequence from clone RP23-14H16 on chr... 44 0.36
11dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 44 0.36
12gb|DQ496105.1| Homo sapiens progesterone receptor membrane compo... 42 1.4
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.4
14gb|DQ334112.1| Drosophila miranda CG1657 gene, partial cds 42 1.4
15gb|AY038877.1|AY038861S16 Mus musculus protein tyrosine phosphat... 42 1.4
16gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
17gb|AC096898.6| Homo sapiens BAC clone RP11-618K19 from 4, comple... 42 1.4
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
19emb|BX546464.10| Mouse DNA sequence from clone RP24-113P16 on ch... 42 1.4
20gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
21emb|AL928949.12| Mouse DNA sequence from clone RP23-226K16 on ch... 42 1.4
22emb|AL954341.14| Mouse DNA sequence from clone RP23-213D14 on ch... 42 1.4
23gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.6
24ref|XM_592945.2| PREDICTED: Bos taurus similar to nischarin (LOC... 40 5.6
25ref|XM_418064.1| PREDICTED: Gallus gallus similar to MGC68875 pr... 40 5.6
26ref|XM_848355.1| PREDICTED: Canis familiaris similar to PDZ doma... 40 5.6
27ref|XM_862293.1| PREDICTED: Canis familiaris similar to PDZ doma... 40 5.6
28ref|XM_385911.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 5.6
29gb|AC124681.3| Mus musculus BAC clone RP24-261H7 from chromosome... 40 5.6
30gb|AC117198.3| Mus musculus BAC clone RP23-127K18 from 9, comple... 40 5.6
31emb|AL592526.11| Human DNA sequence from clone RP11-89O18 on chr... 40 5.6
32emb|AL132774.20|HSDJ402L9 Human DNA sequence from clone RP3-402L... 40 5.6
33emb|AL121929.17|HSBA416N2 Human DNA sequence from clone RP11-416... 40 5.6
34gb|AC136964.2| Sus scrofa domestica clone RP44-154L9, complete s... 40 5.6
35gb|AC106775.3| Homo sapiens chromosome 5 clone RP11-322K12, comp... 40 5.6
36gb|AC011942.6|AC011942 Homo sapiens, clone RP11-16I13, complete ... 40 5.6
37gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 5.6
38dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
39gb|AC112700.4| Homo sapiens BAC clone RP11-1377I19 from 2, compl... 40 5.6
40dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.6
41gb|AC004021.1|AC004021 Human PAC clone RP1-186K10 from 5q31, com... 40 5.6
42dbj|AK072934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
43dbj|AK072503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
44dbj|AK063843.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
45dbj|AK059006.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
46gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
47emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.6
48gb|AC129214.5| Mus musculus BAC clone RP24-426N11 from 16, compl... 40 5.6
49emb|CT025660.9| Mouse DNA sequence from clone RP24-79I19 on chro... 40 5.6
50emb|AL683811.6| Mouse DNA sequence from clone RP23-291K22 on chr... 40 5.6
51emb|AL139175.15| Human DNA sequence from clone RP4-615P17 on chr... 40 5.6 
>gb|AY029558.1| Zea mays putative methyl-binding domain protein MBD105 mRNA,
           complete cds
          Length = 1777

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 360 tacctaaaagcacaccctggaggccctgcgctttcagagtt 400
           |||||||| ||||||||||||||||||||  ||||||||||
Sbjct: 247 tacctaaaggcacaccctggaggccctgctgtttcagagtt 287
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>gb|AY029559.1| Zea mays putative methyl-binding domain protein MBD106 mRNA,
           complete cds
          Length = 1700

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 359 atacctaaaagcacaccctggaggccctgc 388
           ||||||||| ||||||||||||||||||||
Sbjct: 233 atacctaaaggcacaccctggaggccctgc 262
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>gb|AY103948.1| Zea mays PCO124731 mRNA sequence
          Length = 1792

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 359 atacctaaaagcacaccctggaggccctgc 388
           ||||||||| ||||||||||||||||||||
Sbjct: 281 atacctaaaggcacaccctggaggccctgc 310
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 214     aggcgggcgagggggagcagggcgagg 240
               |||||||||||| ||||||||||||||
Sbjct: 3389567 aggcgggcgaggcggagcagggcgagg 3389541
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>gb|DQ231520.1| Streptomyces sp. FR-008 ArsR2 (arsR2), ArsO (arsO), ArsB (arsB),
           ArsR1 (arsR1), ArsC (arsC), and ArsT (arsT) genes,
           complete cds; and unknown genes
          Length = 7568

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 236 cgaggagctcctggccccctccggctggaccaag 269
           |||| |||| ||||||||| ||||||||||||||
Sbjct: 87  cgagaagctgctggcccccaccggctggaccaag 54
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>gb|AY596528.1| Saccharum officinarum clone SCAGLR1043D06, complete sequence
          Length = 1544

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 359 atacctaaaagcacaccctggaggccctgc 388
           |||||| || ||||||||||||||||||||
Sbjct: 291 atacctgaaggcacaccctggaggccctgc 320
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>emb|AL645686.10| Mouse DNA sequence from clone RP23-330D1 on chromosome 13, complete
             sequence
          Length = 137782

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 341   caagaaagctctaaccacatac 362
             ||||||||||||||||||||||
Sbjct: 60799 caagaaagctctaaccacatac 60778
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 86      ctcctcccttgcggcggcggcg 107
               ||||||||||||||||||||||
Sbjct: 2723972 ctcctcccttgcggcggcggcg 2723951
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>gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-245A17, complete sequence
          Length = 180573

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 51    cctctccaaccctccccacccc 72
             ||||||||||||||||||||||
Sbjct: 15631 cctctccaaccctccccacccc 15610
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>emb|CT485616.11| Mouse DNA sequence from clone RP23-14H16 on chromosome 17, complete
              sequence
          Length = 163243

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 49     cccctctccaaccctccccacccctc 74
              |||||||||| |||||||||||||||
Sbjct: 154637 cccctctccacccctccccacccctc 154612
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>dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-94H14, complete
            sequence
          Length = 142000

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 51   cctctccaaccctccccacccc 72
            ||||||||||||||||||||||
Sbjct: 7386 cctctccaaccctccccacccc 7407
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>gb|DQ496105.1| Homo sapiens progesterone receptor membrane component 2 (PGRMC2) gene,
             complete cds
          Length = 21648

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 263   gaccaagaagcttaataccac 283
             |||||||||||||||||||||
Sbjct: 10397 gaccaagaagcttaataccac 10377
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 38      aaatccagagccccctctcca 58
               |||||||||||||||||||||
Sbjct: 3178364 aaatccagagccccctctcca 3178344
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>gb|DQ334112.1| Drosophila miranda CG1657 gene, partial cds
          Length = 1041

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 214 aggcgggcgagggggagcagggcgaggag 242
           ||||||| ||||||||||| |||||||||
Sbjct: 557 aggcgggggagggggagcacggcgaggag 585
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>gb|AY038877.1|AY038861S16 Mus musculus protein tyrosine phosphatase receptor-like protein J
             (Ptprj) gene, exons 2 through 24 and complete cds
          Length = 70607

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 333   gtcaagagcaagaaagctcta 353
             |||||||||||||||||||||
Sbjct: 62125 gtcaagagcaagaaagctcta 62105
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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
              complete sequence
          Length = 101799

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 38     aaatccagagccccctctcca 58
              |||||||||||||||||||||
Sbjct: 101377 aaatccagagccccctctcca 101357
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>gb|AC096898.6| Homo sapiens BAC clone RP11-618K19 from 4, complete sequence
          Length = 160826

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 263   gaccaagaagcttaataccac 283
             |||||||||||||||||||||
Sbjct: 84307 gaccaagaagcttaataccac 84327
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 38      aaatccagagccccctctcca 58
               |||||||||||||||||||||
Sbjct: 3178475 aaatccagagccccctctcca 3178455
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>emb|BX546464.10| Mouse DNA sequence from clone RP24-113P16 on chromosome 2, complete
             sequence
          Length = 70059

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   gtcaagagcaagaaagctcta 353
             |||||||||||||||||||||
Sbjct: 59039 gtcaagagcaagaaagctcta 59059
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>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0083G16, complete sequence
          Length = 145590

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 38   aaatccagagccccctctcca 58
            |||||||||||||||||||||
Sbjct: 3237 aaatccagagccccctctcca 3217
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>emb|AL928949.12| Mouse DNA sequence from clone RP23-226K16 on chromosome 2, complete
             sequence
          Length = 200500

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 333   gtcaagagcaagaaagctcta 353
             |||||||||||||||||||||
Sbjct: 67710 gtcaagagcaagaaagctcta 67690
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>emb|AL954341.14| Mouse DNA sequence from clone RP23-213D14 on chromosome 2, complete
             sequence
          Length = 178273

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   gtcaagagcaagaaagctcta 353
             |||||||||||||||||||||
Sbjct: 62474 gtcaagagcaagaaagctcta 62494
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>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940117D9, complete sequence
          Length = 143368

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    gagcagggcgaggagctcct 247
              ||||||||||||||||||||
Sbjct: 107966 gagcagggcgaggagctcct 107947
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>ref|XM_592945.2| PREDICTED: Bos taurus similar to nischarin (LOC515009), partial
           mRNA
          Length = 3437

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 218 gggcgagggggagcagggcgagga 241
           |||| |||||||||||||||||||
Sbjct: 187 gggccagggggagcagggcgagga 210
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>ref|XM_418064.1| PREDICTED: Gallus gallus similar to MGC68875 protein (LOC419942),
           mRNA
          Length = 875

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 226 gggagcagggcgaggagctcctggccccctcc 257
           |||||||| || | ||||||||||||||||||
Sbjct: 709 gggagcagtgcaaagagctcctggccccctcc 740
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>ref|XM_848355.1| PREDICTED: Canis familiaris similar to PDZ domain containing 4,
           transcript variant 1 (LOC610856), mRNA
          Length = 2354

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 368 agcacaccctggaggccctgcgct 391
           |||| |||||||||||||||||||
Sbjct: 160 agcaaaccctggaggccctgcgct 183
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>ref|XM_862293.1| PREDICTED: Canis familiaris similar to PDZ domain containing 4,
           transcript variant 2 (LOC610856), mRNA
          Length = 2411

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 368 agcacaccctggaggccctgcgct 391
           |||| |||||||||||||||||||
Sbjct: 151 agcaaaccctggaggccctgcgct 174
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>ref|XM_385911.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05735.1)
           partial mRNA
          Length = 1593

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 aactggtgagcaggtcaaga 339
           ||||||||||||||||||||
Sbjct: 957 aactggtgagcaggtcaaga 976
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>gb|AC124681.3| Mus musculus BAC clone RP24-261H7 from chromosome 16, complete sequence
          Length = 173837

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    aggaactcaaatccagagccccct 53
             ||||||||||| ||||||||||||
Sbjct: 47884 aggaactcaaacccagagccccct 47907
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>gb|AC117198.3| Mus musculus BAC clone RP23-127K18 from 9, complete sequence
          Length = 193044

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 47    gccccctctccaaccctccccacccctc 74
             |||||||||||| ||||| |||||||||
Sbjct: 51265 gccccctctccacccctctccacccctc 51238
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>emb|AL592526.11| Human DNA sequence from clone RP11-89O18 on chromosome 1, complete
             sequence
          Length = 21111

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gcggcggcggcgagagcggg 115
             ||||||||||||||||||||
Sbjct: 20775 gcggcggcggcgagagcggg 20794
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>emb|AL132774.20|HSDJ402L9 Human DNA sequence from clone RP3-402L9 on chromosome 6q25-26.1
             Contains the 3' end of the OPRM1 gene for opiate receptor,
             mu 1 (MOR-1) and the 3' end of the gene for
             phosphoinositide-binding protein PIP3-E (KIAA0403),
             complete sequence
          Length = 98104

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    caaccctccccacccctcgc 76
             ||||||||||||||||||||
Sbjct: 24750 caaccctccccacccctcgc 24769
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>emb|AL121929.17|HSBA416N2 Human DNA sequence from clone RP11-416N2 on chromosome 10 Contains the
             3' end of the NEURL gene for neuralized-like (Drosophila),
             the 3' end of the SH3MD1 gene for SH3 multiple domains 1
             and seven CpG islands, complete sequence
          Length = 203262

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   tacaccaactggtgagcagg 333
             ||||||||||||||||||||
Sbjct: 24929 tacaccaactggtgagcagg 24910
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>gb|AC136964.2| Sus scrofa domestica clone RP44-154L9, complete sequence
          Length = 164640

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     cctcccttgcggcggcggcg 107
              ||||||||||||||||||||
Sbjct: 146667 cctcccttgcggcggcggcg 146686
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>gb|AC106775.3| Homo sapiens chromosome 5 clone RP11-322K12, complete sequence
          Length = 137586

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    ctctccaaccctccccaccc 71
             ||||||||||||||||||||
Sbjct: 91293 ctctccaaccctccccaccc 91274
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>gb|AC011942.6|AC011942 Homo sapiens, clone RP11-16I13, complete sequence
          Length = 122538

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   tctaaccacatacctaaaag 369
             ||||||||||||||||||||
Sbjct: 86204 tctaaccacatacctaaaag 86185
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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 87     tcctcccttgcggcggcggcgaga 110
              |||||||| |||||||||||||||
Sbjct: 763259 tcctccctggcggcggcggcgaga 763236
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 369      gcacaccctggaggccctgc 388
                ||||||||||||||||||||
Sbjct: 26460286 gcacaccctggaggccctgc 26460267
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>gb|AC112700.4| Homo sapiens BAC clone RP11-1377I19 from 2, complete sequence
          Length = 46732

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    agccccctctccaaccctcc 65
             ||||||||||||||||||||
Sbjct: 36415 agccccctctccaaccctcc 36434
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 221     cgagggggagcagggcgagg 240
               ||||||||||||||||||||
Sbjct: 2841349 cgagggggagcagggcgagg 2841368
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>gb|AC004021.1|AC004021 Human PAC clone RP1-186K10 from 5q31, complete sequence
          Length = 171370

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctctccaaccctccccaccc 71
             ||||||||||||||||||||
Sbjct: 40247 ctctccaaccctccccaccc 40266
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>dbj|AK072934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146E17, full
           insert sequence
          Length = 862

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 gcacaccctggaggccctgc 388
           ||||||||||||||||||||
Sbjct: 326 gcacaccctggaggccctgc 345
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>dbj|AK072503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023126H05, full
           insert sequence
          Length = 1525

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 gcacaccctggaggccctgc 388
           ||||||||||||||||||||
Sbjct: 318 gcacaccctggaggccctgc 337
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>dbj|AK063843.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-C03, full
           insert sequence
          Length = 480

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 gcacaccctggaggccctgc 388
           ||||||||||||||||||||
Sbjct: 325 gcacaccctggaggccctgc 344
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>dbj|AK059006.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-H05, full
           insert sequence
          Length = 1361

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 gcacaccctggaggccctgc 388
           ||||||||||||||||||||
Sbjct: 360 gcacaccctggaggccctgc 379
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 369      gcacaccctggaggccctgc 388
                ||||||||||||||||||||
Sbjct: 26388455 gcacaccctggaggccctgc 26388436
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>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146366

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   gcacaccctggaggccctgc 388
             ||||||||||||||||||||
Sbjct: 81790 gcacaccctggaggccctgc 81809
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>gb|AC129214.5| Mus musculus BAC clone RP24-426N11 from 16, complete sequence
          Length = 191966

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     aggaactcaaatccagagccccct 53
              ||||||||||| ||||||||||||
Sbjct: 182961 aggaactcaaacccagagccccct 182984
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>emb|CT025660.9| Mouse DNA sequence from clone RP24-79I19 on chromosome 9, complete
              sequence
          Length = 219226

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 47     gccccctctccaaccctccccacccctc 74
              |||||||||||| ||||| |||||||||
Sbjct: 214399 gccccctctccacccctctccacccctc 214426
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>emb|AL683811.6| Mouse DNA sequence from clone RP23-291K22 on chromosome 4, complete
              sequence
          Length = 171213

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     tctccaaccctccccacccc 72
              ||||||||||||||||||||
Sbjct: 121575 tctccaaccctccccacccc 121594
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>emb|AL139175.15| Human DNA sequence from clone RP4-615P17 on chromosome 1p13-14.3,
            complete sequence
          Length = 103718

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   gcggcggcggcgagagcggg 115
            ||||||||||||||||||||
Sbjct: 1664 gcggcggcggcgagagcggg 1683


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,371,013
Number of Sequences: 3902068
Number of extensions: 3371013
Number of successful extensions: 73848
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73355
Number of HSP's gapped (non-prelim): 493
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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